Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g29040 Coffea canephora HOM05D005274 ORTHO05D006485 1.1e-63 246.5 124 100.0
Cc00_g24660 Coffea canephora HOM05D005274 ORTHO05D006485 4.8e-40 167.9 85 96.5
Cc06_g13990 Coffea canephora HOM05D005274 ORTHO05D006485 9.1e-39 163.7 85 94.1
Cc00_g27920 Coffea canephora HOM05D005274 ORTHO05D006485 1.4e-34 149.8 112 71.4
SGA_v2.0_scaffold32G13165 Striga asiatica HOM05D005274 ORTHO05D006485 2.3e-34 149.1 85 81.2
MSTRG.20092 Avicennia marina HOM05D005274 ORTHO05D006485 3.9e-34 148.3 85 81.2
Nitab4.5_0004836g0020 Nicotiana tabacum HOM05D005274 ORTHO05D006485 2.0e-33 146.0 84 82.1
Oeu034171.3 Olea europaea HOM05D005274 ORTHO05D006485 2.0e-33 146.0 84 83.3
CAN.G792.79 Capsicum annuum HOM05D005274 ORTHO05D006485 2.6e-33 145.6 84 81.0
Lj9A368G50 Lonicera japonica HOM05D005274 ORTHO05D006485 2.6e-33 145.6 84 81.0
Solyc08g008040.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 2.6e-33 145.6 84 79.8
Sopen08g003920 Solanum pennellii HOM05D005274 ORTHO05D006485 2.6e-33 145.6 84 79.8
PGSC0003DMG400005779 Solanum tuberosum HOM05D005274 ORTHO05D006485 3.3e-33 145.2 84 79.8
TAR381G1230 Trochodendron aralioides HOM05D005274 ORTHO05D006485 7.4e-33 144.1 85 78.8
Lsat_1_v5_gn_2_86720 Lactuca sativa HOM05D005274 ORTHO05D006485 1.3e-32 143.3 85 75.3
Oeu020806.2 Olea europaea HOM05D005274 ORTHO05D006485 1.7e-32 142.9 84 82.1
Peaxi162Scf00102g01534 Petunia axillaris HOM05D005274 ORTHO05D006485 1.7e-32 142.9 84 79.8
TAR624G0372 Trochodendron aralioides HOM05D005274 ORTHO05D006485 6.3e-32 141.0 84 78.6
vmacro18391 Vaccinium macrocarpon HOM05D005274 ORTHO05D006485 6.3e-32 141.0 85 76.5
Dinv33272 Davidia involucrata HOM05D005274 ORTHO05D006485 1.1e-31 140.2 84 77.4
Migut.B00249 Erythranthe guttata HOM05D005274 ORTHO05D006485 1.1e-31 140.2 85 77.6
HanXRQChr07g0200241 Helianthus annuus HOM05D005274 ORTHO05D006485 1.4e-31 139.8 85 70.6
Nitab4.5_0006090g0030 Nicotiana tabacum HOM05D005274 ORTHO05D006485 1.4e-31 139.8 89 77.5
Rhsim08G0038500 Rhododendron simsii HOM05D005274 ORTHO05D006485 5.3e-31 137.9 85 74.1
CSS0033174 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 1.6e-30 136.3 84 77.4
GSVIVG01032972001 Vitis vinifera HOM05D005274 ORTHO05D006485 1.6e-30 136.3 84 75.0
Nn8g40353 Nelumbo nucifera HOM05D005274 ORTHO05D006485 2.6e-30 135.6 85 70.6
VMungo1309G1271 Vigna mungo HOM05D005274 ORTHO05D006485 2.6e-30 135.6 84 75.0
Cpa.g.sc70.54 Carica papaya HOM05D005274 ORTHO05D006485 3.5e-30 135.2 84 72.6
Hma1.2p1_0474F.1_g160740 Hydrangea macrophylla HOM05D005274 ORTHO05D006485 4.5e-30 134.8 82 76.8
Potri.004G197200 Populus trichocarpa HOM05D005274 ORTHO05D006485 4.5e-30 134.8 84 72.6
unitig_744.g24245 Utricularia gibba HOM05D005274 ORTHO05D006485 4.5e-30 134.8 84 75.0
SalBow6G5022 Salvia bowleyana HOM05D005274 ORTHO05D006485 5.9e-30 134.4 85 71.8
SalBow6G6215 Salvia bowleyana HOM05D005274 ORTHO05D006485 5.9e-30 134.4 85 71.8
Lalb_Chr10g0096401 Lupinus albus HOM05D005274 ORTHO05D006485 1.0e-29 133.7 85 71.8
Manes.11G112500 Manihot esculenta HOM05D005274 ORTHO05D006485 2.2e-29 132.5 84 70.2
QL02p069234 Quercus lobata HOM05D005274 ORTHO05D006485 2.2e-29 132.5 84 73.8
Sabra04G0133600 Salix brachista HOM05D005274 ORTHO05D006485 2.2e-29 132.5 84 71.4
Medtr2g097630 Medicago truncatula HOM05D005274 ORTHO05D006485 2.9e-29 132.1 84 71.4
Eucgr.I01592 Eucalyptus grandis HOM05D005274 ORTHO05D006485 3.8e-29 131.7 85 71.8
Glyma.02G271800 Glycine max HOM05D005274 ORTHO05D006485 6.5e-29 131.0 84 71.4
Ciclev10016162m.g Citrus clementina HOM05D005274 ORTHO05D006485 8.5e-29 130.6 84 70.2
arahy.Tifrunner.gnm1.ann1.5GP605 Arachis hypogaea HOM05D005274 ORTHO05D006485 1.1e-28 130.2 85 69.4
Glyma.14G044800 Glycine max HOM05D005274 ORTHO05D006485 1.1e-28 130.2 84 69.0
arahy.Tifrunner.gnm1.ann1.T7P6Q4 Arachis hypogaea HOM05D005274 ORTHO05D006485 1.5e-28 129.8 85 68.2
Medtr5g071380 Medicago truncatula HOM05D005274 ORTHO05D006485 3.2e-28 128.6 84 69.0
TPR.G27812 Trifolium pratense HOM05D005274 ORTHO05D006485 4.2e-28 128.3 85 67.1
Carub.0004s1624 Capsella rubella HOM05D005274 ORTHO05D006485 7.2e-28 127.5 88 63.6
Ca_26258_v3 Cicer arietinum L. HOM05D005274 ORTHO05D006485 7.2e-28 127.5 84 66.7
BcaC02g11519 Brassica carinata HOM05D005274 ORTHO05D006485 9.4e-28 127.1 88 65.9
BolC4t23029H Brassica oleracea HOM05D005274 ORTHO05D006485 9.4e-28 127.1 88 65.9
Atru.chr6.2707 Acer truncatum HOM05D005274 ORTHO05D006485 1.2e-27 126.7 84 69.0
CARHR128660 Cardamine hirsuta HOM05D005274 ORTHO05D006485 1.2e-27 126.7 88 63.6
Cfa007146 Carpinus fangiana HOM05D005274 ORTHO05D006485 1.2e-27 126.7 85 70.6
Sp4g16830 Schrenkiella parvula HOM05D005274 ORTHO05D006485 1.2e-27 126.7 88 64.8
DCAR_022112 Daucus carota HOM05D005274 ORTHO05D006485 1.6e-27 126.3 85 65.9
Thhalv10017887m.g Eutrema salsugineum HOM05D005274 ORTHO05D006485 1.6e-27 126.3 88 63.6
HPP92_002470 Vanilla planifolia HOM05D005274 ORTHO05D006485 1.6e-27 126.3 84 66.7
AL4G30540 Arabidopsis lyrata HOM05D005274 ORTHO05D006485 2.1e-27 125.9 88 63.6
AT2G34570 Arabidopsis thaliana HOM05D005274 ORTHO05D006485 2.7e-27 125.6 85 64.7
ECA238G2078 Erigeron canadensis HOM05D005274 ORTHO05D006485 2.7e-27 125.6 85 63.5
BcaC01g05789 Brassica carinata HOM05D005274 ORTHO05D006485 3.6e-27 125.2 88 63.6
BolC3t14622H Brassica oleracea HOM05D005274 ORTHO05D006485 3.6e-27 125.2 88 63.6
A03p19190 Brassica napus HOM05D005274 ORTHO05D006485 4.7e-27 124.8 88 63.6
C03p22390 Brassica napus HOM05D005274 ORTHO05D006485 4.7e-27 124.8 88 63.6
BraA03t11174Z Brassica rapa HOM05D005274 ORTHO05D006485 4.7e-27 124.8 88 63.6
Gohir.D11G068400 Gossypium hirsutum HOM05D005274 ORTHO05D006485 4.7e-27 124.8 85 68.2
Sed0000255 Sechium edule HOM05D005274 ORTHO05D006485 4.7e-27 124.8 89 67.4
BcaB01g06368 Brassica carinata HOM05D005274 ORTHO05D006485 6.1e-27 124.4 88 63.6
FvH4_2g10500 Fragaria vesca HOM05D005274 ORTHO05D006485 6.1e-27 124.4 88 68.2
FAN15G2064 Fragaria x ananassa HOM05D005274 ORTHO05D006485 6.1e-27 124.4 88 68.2
FAN27G1266 Fragaria x ananassa HOM05D005274 ORTHO05D006485 6.1e-27 124.4 88 68.2
Gorai.007G073200 Gossypium raimondii HOM05D005274 ORTHO05D006485 6.1e-27 124.4 85 68.2
Sc14g0002660 Simmondsia chinensis HOM05D005274 ORTHO05D006485 8.0e-27 124.0 85 65.9
Psat2g056880 Pisum sativum HOM05D005274 ORTHO05D006485 1.0e-26 123.6 84 64.3
Gohir.A11G064100 Gossypium hirsutum HOM05D005274 ORTHO05D006485 1.4e-26 123.2 84 69.0
LjContig00564g0024425 Lotus japonicus HOM05D005274 ORTHO05D006485 2.3e-26 122.5 84 69.0
THA.LOC104802536 Tarenaya hassleriana HOM05D005274 ORTHO05D006485 2.3e-26 122.5 85 67.1
MD09G1264600 Malus domestica HOM05D005274 ORTHO05D006485 3.0e-26 122.1 88 64.8
Thecc.04G049000 Theobroma cacao HOM05D005274 ORTHO05D006485 3.0e-26 122.1 85 67.1
CiPaw.04G000800 Carya illinoinensis HOM05D005274 ORTHO05D006485 4.0e-26 121.7 85 68.2
FAN24G2993 Fragaria x ananassa HOM05D005274 ORTHO05D006485 4.0e-26 121.7 88 67.0
Duzib187G0989 Durio zibethinus HOM05D005274 ORTHO05D006485 6.7e-26 120.9 85 67.1
RcHm_v2.0_Chr6g0267991 Rosa chinensis HOM05D005274 ORTHO05D006485 8.8e-26 120.6 88 65.9
AUR62009346 Chenopodium quinoa HOM05D005274 ORTHO05D006485 1.5e-25 119.8 91 64.8
SHI31386 Sapria himalayana HOM05D005274 ORTHO05D006485 2.0e-25 119.4 89 61.8
MD08G1181300 Malus domestica HOM05D005274 ORTHO05D006485 2.6e-25 119.0 88 62.5
EL10Ac6g13414 Beta vulgaris HOM05D005274 ORTHO05D006485 3.3e-25 118.6 85 64.7
COL.COLO4_13388 Corchorus olitorius HOM05D005274 ORTHO05D006485 4.4e-25 118.2 85 64.7
Aqoxy5G02491 Aquilegia oxysepala HOM05D005274 ORTHO05D006485 5.7e-25 117.9 107 53.3
ClCG01G008500 Citrullus lanatus HOM05D005274 ORTHO05D006485 5.7e-25 117.9 84 66.7
Hund29750 Selenicereus undatus HOM05D005274 ORTHO05D006485 7.5e-25 117.5 85 65.9
Hund29752 Selenicereus undatus HOM05D005274 ORTHO05D006485 7.5e-25 117.5 85 65.9
AUR62017870 Chenopodium quinoa HOM05D005274 ORTHO05D006485 1.7e-24 116.3 91 62.6
SHI33526 Sapria himalayana HOM05D005274 ORTHO05D006485 1.7e-24 116.3 89 60.7
PSO017G0788 Papaver somniferum HOM05D005274 ORTHO05D006485 2.8e-24 115.5 85 58.8
PSO063G1622 Papaver somniferum HOM05D005274 ORTHO05D006485 2.8e-24 115.5 85 58.8
PGSC0003DMG400011003 Solanum tuberosum HOM05D005274 ORTHO05D006485 3.7e-24 115.2 85 69.4
CANSAT54G1155 Cannabis sativa HOM05D005274 ORTHO05D006485 6.3e-24 114.4 85 60.0
PGR142G3427 Punica granatum HOM05D005274 ORTHO05D006485 6.3e-24 114.4 85 61.2
Aa31LG10G6820 Aethionema arabicum HOM05D005274 ORTHO05D006485 1.1e-23 113.6 120 47.5
MELO3C005096.2 Cucumis melo HOM05D005274 ORTHO05D006485 1.1e-23 113.6 84 64.3
Phvul.005G158400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 1.1e-23 113.6 84 63.1
Prupe.5G024800 Prunus persica HOM05D005274 ORTHO05D006485 1.1e-23 113.6 89 59.6
Potri.009G159400 Populus trichocarpa HOM05D005274 ORTHO05D006485 1.8e-23 112.8 82 62.2
CsaV3_5G024970 Cucumis sativus L. HOM05D005274 ORTHO05D006485 2.4e-23 112.5 84 63.1
MD16G1246600 Malus domestica HOM05D005274 ORTHO05D006485 2.4e-23 112.5 88 59.1
Zm00001eb319780 Zea mays HOM05D005274 ORTHO05D006485 9.1e-23 110.5 113 53.1
Os02g0468200 Oryza sativa ssp. japonica HOM05D005274 ORTHO05D006485 1.1e-20 103.6 113 49.6
SEGI_17090 Sequoiadendron giganteum HOM05D005274 ORTHO05D006485 1.1e-20 103.6 85 54.1
TWI32G1102 Tripterygium wilfordii HOM05D005274 ORTHO05D006485 3.2e-20 102.1 73 61.6
Nitab4.5_0000568g0280 Nicotiana tabacum HOM05D005274 ORTHO05D006485 7.2e-20 100.9 65 72.3
Pp3c2_27880 Physcomitrium patens HOM05D005274 ORTHO05D006485 3.6e-19 98.6 85 55.3
AUR62037816 Chenopodium quinoa HOM05D005274 ORTHO05D006485 8.0e-19 97.4 72 63.9
SMO347G0017 Selaginella moellendorffii HOM05D005274 ORTHO05D006485 2.3e-18 95.9 88 56.8
Ah.10g032810 Amaranthus hybridus HOM05D005274 ORTHO05D006485 3.0e-18 95.5 65 66.2
ATR1136G175 Amborella trichopoda HOM05D005274 ORTHO05D006485 4.0e-18 95.1 123 39.0
Solyc10g084740.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 1.5e-17 93.2 120 45.0
AagrBONN_evm.TU.Sc2ySwM_228.2974 Anthoceros agrestis HOM05D005274 ORTHO05D006485 2.0e-17 92.8 85 50.6
Mapoly0006s0036 Marchantia polymorpha HOM05D005274 ORTHO05D006485 4.4e-17 91.7 85 54.1
C04p14460 Brassica napus HOM05D005274 ORTHO05D006485 3.5e-14 82.0 88 48.9
MCO15G315 Micromonas commoda HOM05D005274 ORTHO05D006485 6.5e-13 77.8 80 46.2
CBR_g8346 Chara braunii HOM05D005274 ORTHO05D006485 4.2e-12 75.1 87 44.8
Sopen10g034190 Solanum pennellii HOM05D005274 ORTHO05D006485 5.5e-12 74.7 63 61.9
Cre11.g480800 Chlamydomonas reinhardtii HOM05D005274 ORTHO05D006485 7.2e-12 74.3 85 43.5
Sabra10G0082800 Salix brachista HOM05D005274 ORTHO05D006485 3.7e-08 62.0 40 60.0
Actinidia19548 Actinidia chinensis HOM05D005274 ORTHO05D006485 1.1e-07 60.5 38 76.3
Phvul.005G025400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 2.4e-07 59.3 51 52.9
Sabra02G0148900 Salix brachista HOM05D005274 ORTHO05D006485 2.4e-07 59.3 40 57.5


User provided reference genes

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