Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g28820 Coffea canephora HOM05D003621 ORTHO05D004259 1.7e-67 259.2 130 100.0
Cc06_g09720 Coffea canephora HOM05D003621 ORTHO05D004259 1.4e-58 229.6 135 88.1
Peaxi162Scf00546g00023 Petunia axillaris HOM05D003621 ORTHO05D004259 6.1e-54 214.2 134 80.6
Nitab4.5_0002904g0090 Nicotiana tabacum HOM05D003621 ORTHO05D004259 1.2e-52 209.9 134 79.1
Ciclev10008142m.g Citrus clementina HOM05D003621 ORTHO05D004259 1.5e-52 209.5 132 81.1
GSVIVG01015385001 Vitis vinifera HOM05D003621 ORTHO05D004259 1.5e-52 209.5 134 79.1
CAN.G1529.8 Capsicum annuum HOM05D003621 ORTHO05D004259 2.0e-52 209.1 134 78.4
MSTRG.19588 Avicennia marina HOM05D003621 ORTHO05D004259 2.6e-52 208.8 135 79.3
Nitab4.5_0005947g0020 Nicotiana tabacum HOM05D003621 ORTHO05D004259 4.4e-52 208.0 134 78.4
QL02p085200 Quercus lobata HOM05D003621 ORTHO05D004259 4.4e-52 208.0 134 79.1
Sopen12g003080 Solanum pennellii HOM05D003621 ORTHO05D004259 5.7e-52 207.6 134 78.4
Cfa021562 Carpinus fangiana HOM05D003621 ORTHO05D004259 7.5e-52 207.2 135 79.3
Haze_25724 Corylus avellana HOM05D003621 ORTHO05D004259 7.5e-52 207.2 135 79.3
Dinv41608 Davidia involucrata HOM05D003621 ORTHO05D004259 7.5e-52 207.2 135 78.5
Solyc12g007100.2 Solanum lycopersicum HOM05D003621 ORTHO05D004259 7.5e-52 207.2 134 78.4
PGSC0003DMG400000311 Solanum tuberosum HOM05D003621 ORTHO05D004259 7.5e-52 207.2 134 78.4
Nitab4.5_0000114g0080 Nicotiana tabacum HOM05D003621 ORTHO05D004259 1.7e-51 206.1 135 79.3
CiPaw.03G231600 Carya illinoinensis HOM05D003621 ORTHO05D004259 2.2e-51 205.7 135 77.8
Actinidia09421 Actinidia chinensis HOM05D003621 ORTHO05D004259 2.8e-51 205.3 135 77.0
Peaxi162Scf00231g00033 Petunia axillaris HOM05D003621 ORTHO05D004259 2.8e-51 205.3 135 79.3
PGSC0003DMG400030220 Solanum tuberosum HOM05D003621 ORTHO05D004259 3.7e-51 204.9 135 77.8
Haze_25731 Corylus avellana HOM05D003621 ORTHO05D004259 4.9e-51 204.5 135 78.5
HanXRQChr09g0239661 Helianthus annuus HOM05D003621 ORTHO05D004259 4.9e-51 204.5 135 75.6
ECA240G2782 Erigeron canadensis HOM05D003621 ORTHO05D004259 8.3e-51 203.8 135 75.6
TWI63G0694 Tripterygium wilfordii HOM05D003621 ORTHO05D004259 8.3e-51 203.8 134 77.6
Hma1.2p1_0018F.1_g013590 Hydrangea macrophylla HOM05D003621 ORTHO05D004259 1.1e-50 203.4 135 78.5
CiPaw.04G163500 Carya illinoinensis HOM05D003621 ORTHO05D004259 1.8e-50 202.6 133 77.4
CSS0004511 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 2.4e-50 202.2 135 77.0
DCAR_028707 Daucus carota HOM05D003621 ORTHO05D004259 2.4e-50 202.2 135 76.3
Nitab4.5_0004562g0010 Nicotiana tabacum HOM05D003621 ORTHO05D004259 2.4e-50 202.2 135 77.8
Hund09208 Selenicereus undatus HOM05D003621 ORTHO05D004259 2.4e-50 202.2 133 75.9
Duzib168G1477 Durio zibethinus HOM05D003621 ORTHO05D004259 3.1e-50 201.8 135 75.6
Thecc.09G109600 Theobroma cacao HOM05D003621 ORTHO05D004259 3.1e-50 201.8 135 75.6
TWI34G1138 Tripterygium wilfordii HOM05D003621 ORTHO05D004259 3.1e-50 201.8 134 76.9
Sopen07g012210 Solanum pennellii HOM05D003621 ORTHO05D004259 4.1e-50 201.4 135 77.0
Oeu044981.1 Olea europaea HOM05D003621 ORTHO05D004259 5.4e-50 201.1 135 77.0
Lj7A651T32 Lonicera japonica HOM05D003621 ORTHO05D004259 7.0e-50 200.7 135 74.8
COL.COLO4_34873 Corchorus olitorius HOM05D003621 ORTHO05D004259 9.2e-50 200.3 135 74.8
Sc08g0007530 Simmondsia chinensis HOM05D003621 ORTHO05D004259 9.2e-50 200.3 135 74.8
Dinv36637 Davidia involucrata HOM05D003621 ORTHO05D004259 1.2e-49 199.9 133 78.9
RhsimUnG0196500 Rhododendron simsii HOM05D003621 ORTHO05D004259 1.2e-49 199.9 133 75.9
Solyc07g023990.3 Solanum lycopersicum HOM05D003621 ORTHO05D004259 1.2e-49 199.9 138 75.4
Prupe.7G232000 Prunus persica HOM05D003621 ORTHO05D004259 1.6e-49 199.5 135 75.6
Lj2g0018985 Lotus japonicus HOM05D003621 ORTHO05D004259 2.7e-49 198.7 135 73.3
Manes.03G021400 Manihot esculenta HOM05D003621 ORTHO05D004259 2.7e-49 198.7 135 75.6
Nn2g11728 Nelumbo nucifera HOM05D003621 ORTHO05D004259 2.7e-49 198.7 135 77.0
Manes.16G115500 Manihot esculenta HOM05D003621 ORTHO05D004259 3.5e-49 198.4 134 76.1
TAR636G2961 Trochodendron aralioides HOM05D003621 ORTHO05D004259 4.5e-49 198.0 135 75.6
Nn8g39169 Nelumbo nucifera HOM05D003621 ORTHO05D004259 5.9e-49 197.6 135 77.8
Ca_03977_v3 Cicer arietinum L. HOM05D003621 ORTHO05D004259 7.8e-49 197.2 135 74.8
Gohir.D13G202000 Gossypium hirsutum HOM05D003621 ORTHO05D004259 7.8e-49 197.2 133 74.4
Gorai.013G230900 Gossypium raimondii HOM05D003621 ORTHO05D004259 7.8e-49 197.2 133 74.4
MD15G1184200 Malus domestica HOM05D003621 ORTHO05D004259 7.8e-49 197.2 135 74.8
Duzib187G1605 Durio zibethinus HOM05D003621 ORTHO05D004259 1.3e-48 196.4 134 73.1
FAN26G0011 Fragaria x ananassa HOM05D003621 ORTHO05D004259 1.3e-48 196.4 135 74.8
Lsat_1_v5_gn_7_40780 Lactuca sativa HOM05D003621 ORTHO05D004259 1.3e-48 196.4 137 73.7
SGA_v2.0_scaffold30G12371 Striga asiatica HOM05D003621 ORTHO05D004259 1.3e-48 196.4 135 74.1
TAR624G1386 Trochodendron aralioides HOM05D003621 ORTHO05D004259 1.3e-48 196.4 133 75.9
Migut.J01155 Erythranthe guttata HOM05D003621 ORTHO05D004259 1.7e-48 196.1 136 75.7
HanXRQChr10g0318561 Helianthus annuus HOM05D003621 ORTHO05D004259 1.7e-48 196.1 135 73.3
TPR.G25311 Trifolium pratense HOM05D003621 ORTHO05D004259 1.7e-48 196.1 135 74.8
Atru.chr7.1358 Acer truncatum HOM05D003621 ORTHO05D004259 2.3e-48 195.7 132 77.3
Eucgr.C01036 Eucalyptus grandis HOM05D003621 ORTHO05D004259 2.9e-48 195.3 138 73.9
PGR142G3711 Punica granatum HOM05D003621 ORTHO05D004259 2.9e-48 195.3 138 74.6
RcHm_v2.0_Chr2g0090311 Rosa chinensis HOM05D003621 ORTHO05D004259 2.9e-48 195.3 135 74.8
FvH4_1g04710 Fragaria vesca HOM05D003621 ORTHO05D004259 3.9e-48 194.9 135 74.8
FAN19G2426 Fragaria x ananassa HOM05D003621 ORTHO05D004259 3.9e-48 194.9 135 74.8
Glyma.09G191100 Glycine max HOM05D003621 ORTHO05D004259 3.9e-48 194.9 135 73.3
AUR62021495 Chenopodium quinoa HOM05D003621 ORTHO05D004259 5.0e-48 194.5 135 73.3
Gohir.A07G006000 Gossypium hirsutum HOM05D003621 ORTHO05D004259 8.6e-48 193.7 133 74.4
Aa31sc29G80 Aethionema arabicum HOM05D003621 ORTHO05D004259 1.1e-47 193.4 135 70.4
EL10Ac8g18488 Beta vulgaris HOM05D003621 ORTHO05D004259 1.1e-47 193.4 134 73.1
FAN28G1412 Fragaria x ananassa HOM05D003621 ORTHO05D004259 1.1e-47 193.4 135 74.1
THA.LOC104808764 Tarenaya hassleriana HOM05D003621 ORTHO05D004259 1.1e-47 193.4 135 71.9
VMungo0464G0841 Vigna mungo HOM05D003621 ORTHO05D004259 1.1e-47 193.4 135 73.3
FAN23G2072 Fragaria x ananassa HOM05D003621 ORTHO05D004259 1.5e-47 193.0 135 74.1
CSS0049361 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 1.9e-47 192.6 135 73.3
MD02G1046000 Malus domestica HOM05D003621 ORTHO05D004259 1.9e-47 192.6 135 73.3
arahy.Tifrunner.gnm1.ann1.EYQI1F Arachis hypogaea HOM05D003621 ORTHO05D004259 2.5e-47 192.2 133 74.4
arahy.Tifrunner.gnm1.ann1.VSCA53 Arachis hypogaea HOM05D003621 ORTHO05D004259 2.5e-47 192.2 133 74.4
CSS0027044 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 2.5e-47 192.2 135 73.3
Cpa.g.sc23.101 Carica papaya HOM05D003621 ORTHO05D004259 2.5e-47 192.2 135 73.3
Gorai.001G005600 Gossypium raimondii HOM05D003621 ORTHO05D004259 2.5e-47 192.2 133 73.7
Lalb_Chr24g0397591 Lupinus albus HOM05D003621 ORTHO05D004259 2.5e-47 192.2 135 73.3
Medtr6g088470 Medicago truncatula HOM05D003621 ORTHO05D004259 2.5e-47 192.2 135 72.6
Potri.018G081000 Populus trichocarpa HOM05D003621 ORTHO05D004259 2.5e-47 192.2 132 75.0
Glyma.07G085800 Glycine max HOM05D003621 ORTHO05D004259 3.3e-47 191.8 135 71.9
Gohir.A13G196700 Gossypium hirsutum HOM05D003621 ORTHO05D004259 3.3e-47 191.8 133 72.2
Potri.006G158600 Populus trichocarpa HOM05D003621 ORTHO05D004259 3.3e-47 191.8 132 76.5
ClCG05G007150 Citrullus lanatus HOM05D003621 ORTHO05D004259 4.3e-47 191.4 135 73.3
BcaC06g35719 Brassica carinata HOM05D003621 ORTHO05D004259 5.6e-47 191.0 135 69.6
A07p07780 Brassica napus HOM05D003621 ORTHO05D004259 5.6e-47 191.0 135 69.6
C07p11700 Brassica napus HOM05D003621 ORTHO05D004259 5.6e-47 191.0 135 69.6
BolC7t41643H Brassica oleracea HOM05D003621 ORTHO05D004259 5.6e-47 191.0 135 69.6
BraA07t28569Z Brassica rapa HOM05D003621 ORTHO05D004259 5.6e-47 191.0 135 69.6
Thhalv10002506m.g Eutrema salsugineum HOM05D003621 ORTHO05D004259 5.6e-47 191.0 135 69.6
Sp3g22320 Schrenkiella parvula HOM05D003621 ORTHO05D004259 5.6e-47 191.0 135 69.6
Hund26199 Selenicereus undatus HOM05D003621 ORTHO05D004259 7.3e-47 190.7 135 71.1
vmacro06217 Vaccinium macrocarpon HOM05D003621 ORTHO05D004259 7.3e-47 190.7 135 72.6
Carub.0003s2492 Capsella rubella HOM05D003621 ORTHO05D004259 9.5e-47 190.3 135 68.9
CsaV3_3G015870 Cucumis sativus L. HOM05D003621 ORTHO05D004259 9.5e-47 190.3 135 71.9
Gohir.D07G006000 Gossypium hirsutum HOM05D003621 ORTHO05D004259 9.5e-47 190.3 133 72.9
Lalb_Chr14g0371541 Lupinus albus HOM05D003621 ORTHO05D004259 9.5e-47 190.3 135 73.3
Ah.14g082090 Amaranthus hybridus HOM05D003621 ORTHO05D004259 1.2e-46 189.9 135 71.1
BcaB06g26656 Brassica carinata HOM05D003621 ORTHO05D004259 1.2e-46 189.9 135 68.9
AUR62010986 Chenopodium quinoa HOM05D003621 ORTHO05D004259 1.2e-46 189.9 133 72.2
Psat1g042960 Pisum sativum HOM05D003621 ORTHO05D004259 1.2e-46 189.9 135 71.9
AL3G40070 Arabidopsis lyrata HOM05D003621 ORTHO05D004259 1.6e-46 189.5 135 68.9
AT3G24530 Arabidopsis thaliana HOM05D003621 ORTHO05D004259 1.6e-46 189.5 135 68.9
Phvul.004G163800 Phaseolus vulgaris HOM05D003621 ORTHO05D004259 1.6e-46 189.5 135 71.9
CARHR100670 Cardamine hirsuta HOM05D003621 ORTHO05D004259 2.1e-46 189.1 135 68.9
PSO782G0111 Papaver somniferum HOM05D003621 ORTHO05D004259 3.6e-46 188.3 135 71.1
Sed0020967 Sechium edule HOM05D003621 ORTHO05D004259 3.6e-46 188.3 131 71.8
Aa31sc99G150 Aethionema arabicum HOM05D003621 ORTHO05D004259 4.7e-46 188.0 129 71.3
vmacro10501 Vaccinium macrocarpon HOM05D003621 ORTHO05D004259 4.7e-46 188.0 133 70.7
Aqoxy7G01646 Aquilegia oxysepala HOM05D003621 ORTHO05D004259 6.1e-46 187.6 135 71.1
MELO3C006786.2 Cucumis melo HOM05D003621 ORTHO05D004259 6.1e-46 187.6 135 71.9
Nn8g39165 Nelumbo nucifera HOM05D003621 ORTHO05D004259 6.1e-46 187.6 135 74.8
PSO832G1684 Papaver somniferum HOM05D003621 ORTHO05D004259 2.3e-45 185.7 135 70.4
unitig_22.g6628 Utricularia gibba HOM05D003621 ORTHO05D004259 6.8e-45 184.1 135 70.4
Sabra18G0068200 Salix brachista HOM05D003621 ORTHO05D004259 8.9e-45 183.7 132 72.0
Sed0008991 Sechium edule HOM05D003621 ORTHO05D004259 1.3e-43 179.9 135 68.1
ATR0315G144 Amborella trichopoda HOM05D003621 ORTHO05D004259 4.9e-43 177.9 135 65.2
HPP92_005264 Vanilla planifolia HOM05D003621 ORTHO05D004259 4.9e-43 177.9 129 69.0
CDE08G0484 Ceratophyllum demersum HOM05D003621 ORTHO05D004259 1.4e-42 176.4 135 65.9
Os02g0266300 Oryza sativa ssp. japonica HOM05D003621 ORTHO05D004259 2.4e-42 175.6 134 64.2
CDE02G2554 Ceratophyllum demersum HOM05D003621 ORTHO05D004259 3.2e-42 175.3 135 65.2
SEGI_35600 Sequoiadendron giganteum HOM05D003621 ORTHO05D004259 1.6e-41 172.9 132 65.2
Zm00001eb204000 Zea mays HOM05D003621 ORTHO05D004259 6.0e-41 171.0 134 61.9
SHI02763 Sapria himalayana HOM05D003621 ORTHO05D004259 1.1e-37 160.2 136 64.7
HanXRQChr16g0522441 Helianthus annuus HOM05D003621 ORTHO05D004259 4.0e-37 158.3 112 72.3
Aqoxy7G01648 Aquilegia oxysepala HOM05D003621 ORTHO05D004259 5.2e-37 157.9 133 62.4
Migut.J01119 Erythranthe guttata HOM05D003621 ORTHO05D004259 8.9e-37 157.1 134 61.9
Nn8g39167 Nelumbo nucifera HOM05D003621 ORTHO05D004259 1.2e-36 156.8 116 74.1
Migut.J01110 Erythranthe guttata HOM05D003621 ORTHO05D004259 2.0e-36 156.0 134 61.2
Migut.J01112 Erythranthe guttata HOM05D003621 ORTHO05D004259 2.0e-36 156.0 134 61.9
SMO367G0606 Selaginella moellendorffii HOM05D003621 ORTHO05D004259 2.6e-36 155.6 127 59.8
Migut.J01103 Erythranthe guttata HOM05D003621 ORTHO05D004259 7.5e-36 154.1 133 62.4
Migut.J01104 Erythranthe guttata HOM05D003621 ORTHO05D004259 7.5e-36 154.1 133 61.7
Oeu064901.1 Olea europaea HOM05D003621 ORTHO05D004259 7.5e-36 154.1 133 60.9
Migut.J01117 Erythranthe guttata HOM05D003621 ORTHO05D004259 9.8e-36 153.7 134 61.9
Migut.J01116 Erythranthe guttata HOM05D003621 ORTHO05D004259 1.3e-35 153.3 134 61.9
Migut.J01118 Erythranthe guttata HOM05D003621 ORTHO05D004259 2.2e-35 152.5 134 60.4
Migut.J01113 Erythranthe guttata HOM05D003621 ORTHO05D004259 8.3e-35 150.6 134 59.7
Migut.J01147 Erythranthe guttata HOM05D003621 ORTHO05D004259 2.1e-33 146.0 134 58.2
SGA_v2.0_scaffold10G05155 Striga asiatica HOM05D003621 ORTHO05D004259 3.0e-32 142.1 134 57.5
SGA_v2.0_scaffold137G35130 Striga asiatica HOM05D003621 ORTHO05D004259 3.3e-31 138.7 129 58.9
SalBow6G5466 Salvia bowleyana HOM05D003621 ORTHO05D000122 9.5e-31 137.1 129 58.1
Migut.J01111 Erythranthe guttata HOM05D003621 ORTHO05D004259 4.7e-30 134.8 130 55.4
SalBow6G6039 Salvia bowleyana HOM05D003621 ORTHO05D004259 1.8e-29 132.9 130 56.9
Migut.G00929 Erythranthe guttata HOM05D003621 ORTHO05D004259 4.0e-29 131.7 133 53.4
SalBow6G0300 Salvia bowleyana HOM05D003621 ORTHO05D004259 4.0e-29 131.7 129 55.8
Aqoxy3G01597 Aquilegia oxysepala HOM05D003621 ORTHO05D004259 4.4e-28 128.3 100 64.0
SalBow6G2522 Salvia bowleyana HOM05D003621 ORTHO05D004259 1.1e-26 123.6 129 53.5
SalBow6G1987 Salvia bowleyana HOM05D003621 ORTHO05D004259 1.9e-26 122.9 129 53.5
SalBow6G3329 Salvia bowleyana HOM05D003621 ORTHO05D004259 7.1e-26 120.9 129 54.3
Actinidia32682 Actinidia chinensis HOM05D003621 ORTHO05D004259 2.3e-24 115.9 126 54.0
Sabra06G0123800 Salix brachista HOM05D000193 ORTHO05D000402 2.4e-21 105.9 85 65.9
Dinv30495 Davidia involucrata HOM05D003621 ORTHO05D004259 6.8e-21 104.4 134 44.8
BcaB03g14578 Brassica carinata HOM05D003621 ORTHO05D004259 4.4e-20 101.7 127 44.9
SalBow6G3888 Salvia bowleyana HOM05D003621 ORTHO05D004259 1.2e-17 93.6 120 47.5
Aqoxy7G01647 Aquilegia oxysepala HOM05D003621 ORTHO05D004259 2.7e-17 92.4 91 53.8
Hma1.2p1_0001F.1_g001560 Hydrangea macrophylla HOM05D003621 ORTHO05D004259 6.0e-17 91.3 128 41.4
Hma1.2p1_1455F.1_g284390 Hydrangea macrophylla HOM05D003621 ORTHO05D004259 6.0e-17 91.3 132 38.6
SalBow6G4774 Salvia bowleyana HOM05D003621 ORTHO05D004259 2.3e-16 89.4 130 46.2
SalBow6G4876 Salvia bowleyana HOM05D003621 ORTHO05D004259 7.3e-15 84.3 72 56.9
SalBow6G0008 Salvia bowleyana HOM05D003621 ORTHO05D004259 1.3e-14 83.6 82 53.7


User provided reference genes

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