Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g28510 Coffea canephora HOM05D003091 ORTHO05D003671 3.7e-79 298.1 150 100.0
Cc01_g05530 Coffea canephora HOM05D003091 ORTHO05D003671 3.3e-67 258.5 133 98.5
TWI60G1477 Tripterygium wilfordii HOM05D003091 ORTHO05D003671 3.7e-63 245.0 133 91.0
Dinv05057 Davidia involucrata HOM05D003091 ORTHO05D003671 4.9e-63 244.6 133 91.0
Dinv36179 Davidia involucrata HOM05D003091 ORTHO05D003671 4.9e-63 244.6 133 90.2
COL.COLO4_05198 Corchorus olitorius HOM05D003091 ORTHO05D003671 1.4e-62 243.0 133 88.7
Thecc.09G249800 Theobroma cacao HOM05D003091 ORTHO05D003671 1.9e-62 242.7 133 89.5
Hma1.2p1_0129F.1_g060120 Hydrangea macrophylla HOM05D003091 ORTHO05D003671 2.4e-62 242.3 133 88.7
Actinidia06957 Actinidia chinensis HOM05D003091 ORTHO05D003671 3.2e-62 241.9 133 88.0
Cpa.g.sc84.1 Carica papaya HOM05D003091 ORTHO05D003671 3.2e-62 241.9 133 89.5
CiPaw.08G023500 Carya illinoinensis HOM05D003091 ORTHO05D003671 3.2e-62 241.9 133 88.7
Actinidia11659 Actinidia chinensis HOM05D003091 ORTHO05D003671 5.4e-62 241.1 131 90.8
CANSAT25G3396 Cannabis sativa HOM05D003091 ORTHO05D003671 5.4e-62 241.1 133 87.2
Haze_21852 Corylus avellana HOM05D003091 ORTHO05D003671 5.4e-62 241.1 133 89.5
Lsat_1_v5_gn_9_48160 Lactuca sativa HOM05D003091 ORTHO05D003671 7.1e-62 240.7 136 87.5
PGR054G0002 Punica granatum HOM05D003091 ORTHO05D003671 7.1e-62 240.7 133 87.2
PGR119G0724 Punica granatum HOM05D003091 ORTHO05D003671 7.1e-62 240.7 133 87.2
Ciclev10015833m.g Citrus clementina HOM05D003091 ORTHO05D003671 9.2e-62 240.4 133 88.0
CSS0001188 Camellia sinensis var. sinensis HOM05D003091 ORTHO05D003671 1.2e-61 240.0 133 88.7
CSS0007409 Camellia sinensis var. sinensis HOM05D003091 ORTHO05D003671 1.2e-61 240.0 133 88.7
CSS0037821 Camellia sinensis var. sinensis HOM05D003091 ORTHO05D003671 1.2e-61 240.0 133 88.7
CiPaw.07G207100 Carya illinoinensis HOM05D003091 ORTHO05D003671 1.2e-61 240.0 133 87.2
Oeu043280.2 Olea europaea HOM05D003091 ORTHO05D003671 1.2e-61 240.0 133 88.7
QL12p026400 Quercus lobata HOM05D003091 ORTHO05D003671 2.7e-61 238.8 133 89.5
Gorai.001G134600 Gossypium raimondii HOM05D003091 ORTHO05D003671 4.6e-61 238.0 131 87.8
SGA_v2.0_scaffold496G52467 Striga asiatica HOM05D003091 ORTHO05D003671 4.6e-61 238.0 133 89.5
TWI34G0762 Tripterygium wilfordii HOM05D003091 ORTHO05D003671 6.0e-61 237.7 133 87.2
ClCG11G014020 Citrullus lanatus HOM05D003091 ORTHO05D003671 7.8e-61 237.3 133 86.5
Eucgr.J00700 Eucalyptus grandis HOM05D003091 ORTHO05D003671 7.8e-61 237.3 133 89.5
MD08G1118300 Malus domestica HOM05D003091 ORTHO05D003671 7.8e-61 237.3 133 86.5
Potri.009G071600 Populus trichocarpa HOM05D003091 ORTHO05D003671 7.8e-61 237.3 133 88.0
GSVIVG01037261001 Vitis vinifera HOM05D003091 ORTHO05D003671 7.8e-61 237.3 133 86.5
Potri.001G276700 Populus trichocarpa HOM05D003091 ORTHO05D003671 1.0e-60 236.9 133 88.7
Sc16g0011120 Simmondsia chinensis HOM05D003091 ORTHO05D003671 1.3e-60 236.5 133 87.2
Actinidia23988 Actinidia chinensis HOM05D003091 ORTHO05D003671 1.7e-60 236.1 133 88.7
Duzib150G1361 Durio zibethinus HOM05D003091 ORTHO05D003671 1.7e-60 236.1 131 88.5
Duzib168G2072 Durio zibethinus HOM05D003091 ORTHO05D003671 2.3e-60 235.7 131 87.0
Gohir.A07G120600 Gossypium hirsutum HOM05D003091 ORTHO05D003671 2.3e-60 235.7 131 87.0
Psat6g034320 Pisum sativum HOM05D003091 ORTHO05D003671 2.3e-60 235.7 133 85.7
Glyma.06G081900 Glycine max HOM05D003091 ORTHO05D003671 3.0e-60 235.3 133 88.0
Cfa013345 Carpinus fangiana HOM05D003091 ORTHO05D003671 3.9e-60 235.0 133 88.0
CsaV3_3G047430 Cucumis sativus L. HOM05D003091 ORTHO05D003671 3.9e-60 235.0 133 86.5
MD15G1097600 Malus domestica HOM05D003091 ORTHO05D003671 3.9e-60 235.0 131 87.0
Manes.02G140400 Manihot esculenta HOM05D003091 ORTHO05D003671 3.9e-60 235.0 133 86.5
Ca_12800_v3 Cicer arietinum L. HOM05D003091 ORTHO05D003671 5.1e-60 234.6 131 87.0
Ca_12810_v3 Cicer arietinum L. HOM05D003091 ORTHO05D003671 5.1e-60 234.6 133 85.7
Ca_15619_v3 Cicer arietinum L. HOM05D003091 ORTHO05D003671 5.1e-60 234.6 131 87.0
Gohir.D13G222900 Gossypium hirsutum HOM05D003091 ORTHO05D003671 5.1e-60 234.6 133 85.7
Gohir.D13G223001 Gossypium hirsutum HOM05D003091 ORTHO05D003671 5.1e-60 234.6 133 85.7
Gorai.009G075500 Gossypium raimondii HOM05D003091 ORTHO05D003671 5.1e-60 234.6 131 87.0
Gorai.013G254000 Gossypium raimondii HOM05D003091 ORTHO05D003671 5.1e-60 234.6 133 85.7
Psat0s3378g0040 Pisum sativum HOM05D003091 ORTHO05D003671 5.1e-60 234.6 131 87.0
Rhsim01G0194700 Rhododendron simsii HOM05D003091 ORTHO05D003671 5.1e-60 234.6 138 86.2
Gohir.D05G074400 Gossypium hirsutum HOM05D003091 ORTHO05D003671 6.6e-60 234.2 131 87.0
Oeu025901.1 Olea europaea HOM05D003091 ORTHO05D003671 6.6e-60 234.2 133 87.2
Prupe.1G452500 Prunus persica HOM05D003091 ORTHO05D003671 6.6e-60 234.2 133 86.5
CAN.G917.5 Capsicum annuum HOM05D003091 ORTHO05D003671 8.6e-60 233.8 133 87.2
Gohir.D07G124800 Gossypium hirsutum HOM05D003091 ORTHO05D003671 8.6e-60 233.8 129 87.6
Nitab4.5_0001500g0090 Nicotiana tabacum HOM05D003091 ORTHO05D003671 8.6e-60 233.8 133 85.7
TPR.G1379 Trifolium pratense HOM05D003091 ORTHO05D003671 8.6e-60 233.8 131 86.3
Glyma.04G080200 Glycine max HOM05D003091 ORTHO05D003671 1.1e-59 233.4 133 88.0
MBI19_g08870_MAGBIO Magnolia biondii HOM05D003091 ORTHO05D003671 1.1e-59 233.4 134 86.6
Sed0002878 Sechium edule HOM05D003091 ORTHO05D003671 1.1e-59 233.4 133 85.0
arahy.Tifrunner.gnm1.ann1.0Z0DIR Arachis hypogaea HOM05D003091 ORTHO05D003671 1.5e-59 233.0 133 84.2
arahy.Tifrunner.gnm1.ann1.Y550S7 Arachis hypogaea HOM05D003091 ORTHO05D003671 1.5e-59 233.0 133 84.2
Hund07443 Selenicereus undatus HOM05D003091 ORTHO05D003671 1.5e-59 233.0 133 84.2
DCAR_029992 Daucus carota HOM05D003091 ORTHO05D003671 1.9e-59 232.6 131 88.5
Nitab4.5_0005212g0030 Nicotiana tabacum HOM05D003091 ORTHO05D003671 1.9e-59 232.6 128 89.8
Migut.N02369 Erythranthe guttata HOM05D003091 ORTHO05D003671 2.5e-59 232.3 133 86.5
FvH4_2g36110 Fragaria vesca HOM05D003091 ORTHO05D003671 3.3e-59 231.9 131 84.7
TPR.G12114 Trifolium pratense HOM05D003091 ORTHO05D003671 3.3e-59 231.9 129 88.4
AUR62000182 Chenopodium quinoa HOM05D003091 ORTHO05D003671 4.3e-59 231.5 133 83.5
AUR62006534 Chenopodium quinoa HOM05D003091 ORTHO05D003671 4.3e-59 231.5 133 83.5
Oeu039575.1 Olea europaea HOM05D003091 ORTHO05D003671 4.3e-59 231.5 131 87.8
Sopen11g024530 Solanum pennellii HOM05D003091 ORTHO05D003671 4.3e-59 231.5 140 85.0
TAR623G1108 Trochodendron aralioides HOM05D003091 ORTHO05D003671 4.3e-59 231.5 133 86.5
Gohir.A05G071500 Gossypium hirsutum HOM05D003091 ORTHO05D003671 5.6e-59 231.1 131 86.3
Peaxi162Scf00032g02617 Petunia axillaris HOM05D003091 ORTHO05D003671 5.6e-59 231.1 131 87.8
Peaxi162Scf00004g04618 Petunia axillaris HOM05D003091 ORTHO05D003671 7.3e-59 230.7 133 85.7
Lj1g0011096 Lotus japonicus HOM05D003091 ORTHO05D003671 9.5e-59 230.3 133 85.0
Nitab4.5_0000718g0270 Nicotiana tabacum HOM05D003091 ORTHO05D003671 9.5e-59 230.3 128 89.1
RcHm_v2.0_Chr6g0305761 Rosa chinensis HOM05D003091 ORTHO05D003671 9.5e-59 230.3 131 85.5
Solyc11g064790.2 Solanum lycopersicum HOM05D003091 ORTHO05D003671 9.5e-59 230.3 140 83.6
arahy.Tifrunner.gnm1.ann1.H5V5GF Arachis hypogaea HOM05D003091 ORTHO05D003671 1.2e-58 229.9 133 86.5
arahy.Tifrunner.gnm1.ann1.IEZM4M Arachis hypogaea HOM05D003091 ORTHO05D003671 1.2e-58 229.9 133 86.5
VMungo1309G1449 Vigna mungo HOM05D003091 ORTHO05D003671 1.2e-58 229.9 131 87.8
FAN20G1214 Fragaria x ananassa HOM05D003091 ORTHO05D003671 1.6e-58 229.6 131 84.7
Manes.01G179800 Manihot esculenta HOM05D003091 ORTHO05D003671 1.6e-58 229.6 133 83.5
Phvul.009G106300 Phaseolus vulgaris HOM05D003091 ORTHO05D003671 1.6e-58 229.6 133 85.7
Sed0016432 Sechium edule HOM05D003091 ORTHO05D003671 1.6e-58 229.6 133 85.0
MSTRG.17631 Avicennia marina HOM05D003091 ORTHO05D003671 2.1e-58 229.2 133 85.0
FAN27G0636 Fragaria x ananassa HOM05D003091 ORTHO05D003671 2.1e-58 229.2 131 84.0
Lsat_1_v5_gn_8_26901 Lactuca sativa HOM05D003091 ORTHO05D003671 2.8e-58 228.8 131 87.0
Lalb_Chr11g0064331 Lupinus albus HOM05D003091 ORTHO05D003671 3.6e-58 228.4 133 85.0
Medtr1g008280 Medicago truncatula HOM05D003091 ORTHO05D003671 3.6e-58 228.4 133 84.2
TAR369G0586 Trochodendron aralioides HOM05D003091 ORTHO05D003671 3.6e-58 228.4 131 86.3
Glyma.14G142100 Glycine max HOM05D003091 ORTHO05D003671 4.7e-58 228.0 133 85.0
Medtr3g109932 Medicago truncatula HOM05D003091 ORTHO05D003671 4.7e-58 228.0 131 85.5
Solyc01g008820.3 Solanum lycopersicum HOM05D003091 ORTHO05D003671 4.7e-58 228.0 140 82.1
Sopen01g004330 Solanum pennellii HOM05D003091 ORTHO05D003671 4.7e-58 228.0 140 82.1
TAR633G0445 Trochodendron aralioides HOM05D003091 ORTHO05D003671 4.7e-58 228.0 131 86.3
HanXRQChr13g0388471 Helianthus annuus HOM05D003091 ORTHO05D003671 6.2e-58 227.6 133 85.0
Lj1C287G1 Lonicera japonica HOM05D003091 ORTHO05D003671 8.1e-58 227.3 131 86.3
SGA_v2.0_scaffold29G12260 Striga asiatica HOM05D003091 ORTHO05D003671 8.1e-58 227.3 140 84.3
ATR0580G276 Amborella trichopoda HOM05D003091 ORTHO05D003671 1.1e-57 226.9 129 86.0
EL10Ac4g10152 Beta vulgaris HOM05D003091 ORTHO05D003671 1.1e-57 226.9 133 82.0
PGSC0003DMG400022714 Solanum tuberosum HOM05D003091 ORTHO05D003671 1.1e-57 226.9 138 82.6
Rhsim13G0211100 Rhododendron simsii HOM05D003091 ORTHO05D003671 1.8e-57 226.1 149 77.9
EL10Ac4g10135 Beta vulgaris HOM05D003091 ORTHO05D003671 3.1e-57 225.3 133 81.2
CAN.G96.11 Capsicum annuum HOM05D003091 ORTHO05D003671 3.1e-57 225.3 133 83.5
DCAR_002102 Daucus carota HOM05D003091 ORTHO05D003671 1.2e-56 223.4 138 82.6
HanXRQChr08g0216751 Helianthus annuus HOM05D003091 ORTHO05D003671 1.5e-56 223.0 131 84.7
MBI13_g30131_MAGBIO Magnolia biondii HOM05D003091 ORTHO05D003671 1.5e-56 223.0 129 84.5
PGSC0003DMG400009454 Solanum tuberosum HOM05D003091 ORTHO05D003671 1.5e-56 223.0 130 85.4
Aa31LG10G9280 Aethionema arabicum HOM05D003091 ORTHO05D003671 2.0e-56 222.6 133 83.5
Migut.D00654 Erythranthe guttata HOM05D003091 ORTHO05D003671 2.0e-56 222.6 133 84.2
CDE06G0965 Ceratophyllum demersum HOM05D003091 ORTHO05D003671 2.6e-56 222.2 128 84.4
Aqoxy2G00365 Aquilegia oxysepala HOM05D003091 ORTHO05D003671 3.4e-56 221.9 131 83.2
ECA233G4335 Erigeron canadensis HOM05D003091 ORTHO05D003671 4.4e-56 221.5 133 83.5
Lalb_Chr08g0243271 Lupinus albus HOM05D003091 ORTHO05D003671 4.4e-56 221.5 129 86.0
unitig_27.g25006 Utricularia gibba HOM05D003091 ORTHO05D003671 4.4e-56 221.5 131 81.7
CDE02G3432 Ceratophyllum demersum HOM05D003091 ORTHO05D003671 5.8e-56 221.1 128 84.4
Ah.04g161990 Amaranthus hybridus HOM05D003091 ORTHO05D003671 7.6e-56 220.7 133 79.7
Nn7g36666 Nelumbo nucifera HOM05D003091 ORTHO05D003671 7.6e-56 220.7 131 84.0
vmacro04023 Vaccinium macrocarpon HOM05D003091 ORTHO05D003671 7.6e-56 220.7 121 89.3
BcaC04g21506 Brassica carinata HOM05D003091 ORTHO05D003671 9.9e-56 220.3 133 81.2
A06p43280 Brassica napus HOM05D003091 ORTHO05D003671 9.9e-56 220.3 133 81.2
A09p24090 Brassica napus HOM05D003091 ORTHO05D003671 9.9e-56 220.3 133 81.2
C07p33670 Brassica napus HOM05D003091 ORTHO05D003671 9.9e-56 220.3 133 81.2
C09p30980 Brassica napus HOM05D003091 ORTHO05D003671 9.9e-56 220.3 133 81.2
BolC9t55957H Brassica oleracea HOM05D003091 ORTHO05D003671 9.9e-56 220.3 133 81.2
BraA06t27214Z Brassica rapa HOM05D003091 ORTHO05D003671 9.9e-56 220.3 133 81.2
BraA09t38009Z Brassica rapa HOM05D003091 ORTHO05D003671 9.9e-56 220.3 133 81.2
BcaB07g30686 Brassica carinata HOM05D003091 ORTHO05D003671 1.7e-55 219.5 133 81.2
BcaC03g17184 Brassica carinata HOM05D003091 ORTHO05D003671 1.7e-55 219.5 131 82.4
A02p33230 Brassica napus HOM05D003091 ORTHO05D003671 1.7e-55 219.5 131 82.4
C02p51130 Brassica napus HOM05D003091 ORTHO05D003671 1.7e-55 219.5 131 82.4
BolC2t11200H Brassica oleracea HOM05D003091 ORTHO05D003671 1.7e-55 219.5 131 82.4
BraA02t08347Z Brassica rapa HOM05D003091 ORTHO05D003671 1.7e-55 219.5 131 82.4
Thhalv10004551m.g Eutrema salsugineum HOM05D003091 ORTHO05D003671 1.7e-55 219.5 133 81.2
Sabra09G0053900 Salix brachista HOM05D003091 ORTHO05D003671 1.7e-55 219.5 165 70.9
AL5G12770 Arabidopsis lyrata HOM05D003091 ORTHO05D003671 2.2e-55 219.2 133 80.5
AT2G03120 Arabidopsis thaliana HOM05D003091 ORTHO05D003671 2.2e-55 219.2 133 80.5
BcaC06g31199 Brassica carinata HOM05D003091 ORTHO05D003671 2.2e-55 219.2 133 81.2
Carub.0005s0195 Capsella rubella HOM05D003091 ORTHO05D003671 2.2e-55 219.2 133 81.2
Lalb_Chr23g0269441 Lupinus albus HOM05D003091 ORTHO05D003671 2.9e-55 218.8 129 83.7
CARHR145460 Cardamine hirsuta HOM05D003091 ORTHO05D003671 3.8e-55 218.4 133 79.7
BcaB07g30310 Brassica carinata HOM05D003091 ORTHO05D003671 4.9e-55 218.0 133 80.5
CSS0031638 Camellia sinensis var. sinensis HOM05D003091 ORTHO05D003671 4.9e-55 218.0 119 89.9
Sp2g14090 Schrenkiella parvula HOM05D003091 ORTHO05D003671 8.4e-55 217.2 133 81.2
PSO339G4627 Papaver somniferum HOM05D003091 ORTHO05D003671 1.4e-54 216.5 131 80.2
PSO384G1550 Papaver somniferum HOM05D003091 ORTHO05D003671 1.4e-54 216.5 131 80.2
Nn2g14838 Nelumbo nucifera HOM05D003091 ORTHO05D003671 3.2e-54 215.3 131 82.4
THA.LOC104816927 Tarenaya hassleriana HOM05D003091 ORTHO05D003671 3.2e-54 215.3 129 82.9
HPP92_020481 Vanilla planifolia HOM05D003091 ORTHO05D003671 5.4e-54 214.5 138 79.0
ECA232G2856 Erigeron canadensis HOM05D003091 ORTHO05D003671 9.2e-54 213.8 131 81.7
FAN15G0484 Fragaria x ananassa HOM05D003091 ORTHO05D003671 1.6e-53 213.0 164 67.1
Hund21985 Selenicereus undatus HOM05D003091 ORTHO05D003671 2.1e-53 212.6 124 84.7
THA.LOC104826452 Tarenaya hassleriana HOM05D003091 ORTHO05D003671 4.6e-53 211.5 133 78.9
Nitab4.5_0000730g0130 Nicotiana tabacum HOM05D003091 ORTHO05D003671 7.8e-53 210.7 119 85.7
Os02g0117400 Oryza sativa ssp. japonica HOM05D003091 ORTHO05D003671 2.3e-52 209.1 133 77.4
Zm00001eb209380 Zea mays HOM05D003091 ORTHO05D003671 3.0e-52 208.8 128 80.5
Zm00001eb230050 Zea mays HOM05D003091 ORTHO05D003671 6.6e-52 207.6 133 76.7
Ah.06g194480 Amaranthus hybridus HOM05D000189 ORTHO05D000474 8.6e-52 207.2 127 81.1
Os05g0436400 Oryza sativa ssp. japonica HOM05D003091 ORTHO05D003671 8.6e-52 207.2 128 79.7
SEGI_37865 Sequoiadendron giganteum HOM05D003091 ORTHO05D003671 8.6e-52 207.2 131 76.3
BolC7t43877H Brassica oleracea HOM05D003091 ORTHO05D003671 3.6e-50 201.8 124 79.0
BcaC06g34018 Brassica carinata HOM05D003091 ORTHO05D003671 8.1e-50 200.7 120 80.8
Pp3c3_24000 Physcomitrium patens HOM05D003091 ORTHO05D003671 2.2e-47 192.6 127 70.1
Pp3c3_24020 Physcomitrium patens HOM05D003091 ORTHO05D003671 2.2e-47 192.6 127 70.1
Mapoly0057s0081 Marchantia polymorpha HOM05D003091 ORTHO05D003671 4.6e-45 184.9 133 66.2
MSTRG.12444 Avicennia marina HOM05D003091 ORTHO05D003671 7.3e-43 177.6 106 84.9
SMO172G0078 Selaginella moellendorffii HOM05D003091 ORTHO05D003671 3.2e-38 162.2 125 63.2
Duzib170G0109 Durio zibethinus HOM05D003091 ORTHO05D003671 9.3e-38 160.6 133 62.4
Gohir.D10G151000 Gossypium hirsutum HOM05D003091 ORTHO05D003671 1.9e-35 152.9 90 85.6
MELO3C003581.2 Cucumis melo HOM05D003091 ORTHO05D003671 1.3e-28 130.2 133 52.6
Cre07.g332550 Chlamydomonas reinhardtii HOM05D003091 ORTHO05D003671 1.2e-21 107.1 109 48.6
CBR_g39566 Chara braunii HOM05D003091 ORTHO05D003671 8.7e-20 100.9 77 62.3
Sc16g0011130 Simmondsia chinensis HOM05D003091 ORTHO05D003671 1.9e-19 99.8 133 42.9
Atru.chr3.2779 Acer truncatum HOM05D003091 ORTHO05D003671 5.3e-17 91.7 52 84.6
PRCOL_00004266 Prasinoderma coloniale HOM05D003091 ORTHO05D003671 1.2e-16 90.5 126 42.1
PSO063G4727 Papaver somniferum HOM05D003091 ORTHO05D003671 1.3e-15 87.0 145 43.4
MELO3C034374.2 Cucumis melo HOM05D003091 ORTHO05D003671 4.2e-14 82.0 71 59.2
TPR.G30569 Trifolium pratense HOM05D003091 ORTHO05D003671 9.3e-14 80.9 87 50.6
Gohir.A13G219200 Gossypium hirsutum HOM05D003091 ORTHO05D003671 2.5e-06 56.2 42 59.5


User provided reference genes

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