Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g28410 Coffea canephora HOM05D003819 ORTHO05D005291 0.0e+00 1441.8 710 100.0
Cc05_g08390 Coffea canephora HOM05D003819 ORTHO05D005291 0.0e+00 1385.9 710 96.6
Nitab4.5_0006875g0030 Nicotiana tabacum HOM05D003819 ORTHO05D005291 2.3e-296 1021.9 718 70.9
Nitab4.5_0000249g0240 Nicotiana tabacum HOM05D003819 ORTHO05D005291 2.0e-295 1018.8 718 71.4
Solyc12g010900.1 Solanum lycopersicum HOM05D003819 ORTHO05D005291 6.3e-294 1013.8 716 70.1
Sopen12g006260 Solanum pennellii HOM05D003819 ORTHO05D005291 1.4e-293 1012.7 716 70.1
PGSC0003DMG400007856 Solanum tuberosum HOM05D003819 ORTHO05D005291 7.2e-290 1000.3 718 69.6
PGSC0003DMG400035320 Solanum tuberosum HOM05D003819 ORTHO05D005291 9.4e-290 1000.0 716 70.5
Nitab4.5_0013227g0010 Nicotiana tabacum HOM05D003819 ORTHO05D005291 5.9e-284 980.7 717 68.5
Peaxi162Scf00384g00211 Petunia axillaris HOM05D003819 ORTHO05D005291 6.5e-283 977.2 712 69.2
Migut.M00265 Erythranthe guttata HOM05D003819 ORTHO05D005291 9.4e-282 973.4 718 69.6
Sopen07g027110 Solanum pennellii HOM05D003819 ORTHO05D005291 2.7e-281 971.8 716 68.4
CAN.G1148.8 Capsicum annuum HOM05D003819 ORTHO05D005291 2.8e-278 961.8 717 67.5
CAN.G1081.14 Capsicum annuum HOM05D003819 ORTHO05D005291 2.5e-274 948.7 712 67.0
Actinidia11157 Actinidia chinensis HOM05D003819 ORTHO05D005291 1.0e-272 943.3 714 66.7
Lj1P684T13 Lonicera japonica HOM05D003819 ORTHO05D005291 1.5e-271 939.5 717 66.4
MSTRG.15087 Avicennia marina HOM05D003819 ORTHO05D005291 5.7e-271 937.6 722 66.6
DCAR_021294 Daucus carota HOM05D003819 ORTHO05D005291 1.4e-269 932.9 716 65.8
SalBow7G4473 Salvia bowleyana HOM05D003819 ORTHO05D005291 1.4e-269 932.9 713 67.5
Solyc07g055120.4 Solanum lycopersicum HOM05D003819 ORTHO05D005291 6.8e-264 914.1 716 65.8
SGA_v2.0_scaffold9G04831 Striga asiatica HOM05D003819 ORTHO05D005291 8.3e-262 907.1 718 65.2
ECA233G0398 Erigeron canadensis HOM05D003819 ORTHO05D005291 1.1e-261 906.7 711 64.8
HanXRQChr17g0558991 Helianthus annuus HOM05D003819 ORTHO05D005291 1.8e-261 906.0 709 65.7
Lsat_1_v5_gn_8_141221 Lactuca sativa HOM05D003819 ORTHO05D005291 1.9e-258 896.0 710 64.4
COL.COLO4_33586 Corchorus olitorius HOM05D003819 ORTHO05D005291 1.3e-254 883.2 711 63.9
Rhsim06G0130800 Rhododendron simsii HOM05D003819 ORTHO05D005291 1.3e-254 883.2 728 62.9
CSS0043691 Camellia sinensis var. sinensis HOM05D003819 ORTHO05D005291 1.7e-254 882.9 726 64.2
GSVIVG01020711001 Vitis vinifera HOM05D003819 ORTHO05D005291 1.4e-253 879.8 711 62.9
TAR629G3160 Trochodendron aralioides HOM05D003819 ORTHO05D005291 2.0e-252 875.9 731 61.7
Oeu058996.1 Olea europaea HOM05D003819 ORTHO05D005291 4.3e-250 868.2 714 64.8
Atru.chr6.2788 Acer truncatum HOM05D003819 ORTHO05D005291 3.4e-247 858.6 710 62.3
Dinv07714 Davidia involucrata HOM05D003819 ORTHO05D005291 7.5e-247 857.4 723 62.7
Gohir.D12G091900 Gossypium hirsutum HOM05D003819 ORTHO05D005291 3.7e-246 855.1 713 61.4
Gorai.008G099500 Gossypium raimondii HOM05D003819 ORTHO05D005291 1.9e-245 852.8 716 60.9
Gohir.A12G077800 Gossypium hirsutum HOM05D003819 ORTHO05D005291 4.1e-245 851.7 716 60.8
ClCG07G002740 Citrullus lanatus HOM05D003819 ORTHO05D005291 9.2e-245 850.5 718 59.7
Cfa023595 Carpinus fangiana HOM05D003819 ORTHO05D005291 1.2e-244 850.1 714 61.5
MELO3C018720.2 Cucumis melo HOM05D003819 ORTHO05D005291 1.2e-244 850.1 722 59.7
Cpa.g.sc52.168 Carica papaya HOM05D003819 ORTHO05D005291 1.1e-242 843.6 713 61.6
CsaV3_7G005710 Cucumis sativus L. HOM05D003819 ORTHO05D005291 1.6e-241 839.7 723 59.3
Duzib264G1063 Durio zibethinus HOM05D003819 ORTHO05D005291 2.8e-241 839.0 710 60.6
Prupe.3G117700 Prunus persica HOM05D003819 ORTHO05D005291 1.1e-240 837.0 729 60.1
Thecc.01G151000 Theobroma cacao HOM05D003819 ORTHO05D005291 1.2e-239 833.6 715 60.4
Sed0027609 Sechium edule HOM05D003819 ORTHO05D005291 7.6e-239 830.9 725 58.9
FAN05G0664 Fragaria x ananassa HOM05D003819 ORTHO05D005291 2.9e-238 828.9 724 59.3
FAN02G3241 Fragaria x ananassa HOM05D003819 ORTHO05D005291 4.9e-238 828.2 730 59.0
FAN09G4766 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.4e-237 826.6 730 59.0
FvH4_6g27480 Fragaria vesca HOM05D003819 ORTHO05D005291 1.9e-237 826.2 728 59.2
Manes.17G056400 Manihot esculenta HOM05D003819 ORTHO05D005291 7.1e-237 824.3 719 58.7
PGR142G0379 Punica granatum HOM05D003819 ORTHO05D005291 7.1e-237 824.3 712 61.0
RcHm_v2.0_Chr2g0129761 Rosa chinensis HOM05D003819 ORTHO05D005291 7.1e-237 824.3 726 59.2
QL08p041841 Quercus lobata HOM05D003819 ORTHO05D005291 2.1e-236 822.8 719 59.1
MBI06_g08600_MAGBIO Magnolia biondii HOM05D003819 ORTHO05D005291 2.7e-236 822.4 711 59.8
FAN14G1852 Fragaria x ananassa HOM05D003819 ORTHO05D005291 3.5e-236 822.0 728 58.9
CiPaw.03G195200 Carya illinoinensis HOM05D003819 ORTHO05D005291 1.7e-235 819.7 726 59.5
CANSAT64G0548 Cannabis sativa HOM05D003819 ORTHO05D005291 3.9e-235 818.5 715 59.3
Potri.011G066700 Populus trichocarpa HOM05D003819 ORTHO05D005291 5.1e-235 818.1 708 58.9
MD17G1266700 Malus domestica HOM05D003819 ORTHO05D005291 8.6e-235 817.4 727 59.7
Potri.014G142600 Populus trichocarpa HOM05D003819 ORTHO05D005291 2.5e-234 815.8 711 59.9
Peaxi162Scf00469g00034 Petunia axillaris HOM05D003819 ORTHO05D005291 9.6e-234 813.9 564 71.1
MD09G1236800 Malus domestica HOM05D003819 ORTHO05D005291 2.1e-233 812.8 723 58.2
Eucgr.K01130 Eucalyptus grandis HOM05D003819 ORTHO05D005291 4.7e-233 811.6 710 60.0
Sabra14G0107700 Salix brachista HOM05D003819 ORTHO05D005291 1.1e-232 810.4 711 59.5
PSO675G1769 Papaver somniferum HOM05D003819 ORTHO05D005291 1.4e-232 810.1 721 56.4
Lalb_Chr22g0356941 Lupinus albus HOM05D003819 ORTHO05D005291 2.4e-232 809.3 725 58.9
Manes.17G056300 Manihot esculenta HOM05D003819 ORTHO05D005291 2.4e-232 809.3 706 58.6
Ciclev10014472m.g Citrus clementina HOM05D003819 ORTHO05D005291 4.0e-232 808.5 713 57.2
Glyma.12G128600 Glycine max HOM05D003819 ORTHO05D005291 2.6e-231 805.8 713 59.0
Lalb_Chr03g0029931 Lupinus albus HOM05D003819 ORTHO05D005291 1.3e-230 803.5 718 59.1
VMungo1127G0295 Vigna mungo HOM05D003819 ORTHO05D005291 1.3e-230 803.5 715 58.7
C04p03960 Brassica napus HOM05D003819 ORTHO05D005291 9.3e-229 797.3 716 56.6
Phvul.011G129700 Phaseolus vulgaris HOM05D003819 ORTHO05D005291 9.3e-229 797.3 715 58.0
Aa31LG1G24420 Aethionema arabicum HOM05D003819 ORTHO05D005291 1.6e-228 796.6 718 57.7
Sp4g24760 Schrenkiella parvula HOM05D003819 ORTHO05D005291 4.6e-228 795.0 712 56.9
Aqoxy1G02044 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 7.8e-228 794.3 723 55.9
BolC4t22032H Brassica oleracea HOM05D003819 ORTHO05D005291 3.0e-227 792.3 743 55.3
BcaNung03224 Brassica carinata HOM05D003819 ORTHO05D005291 5.1e-227 791.6 717 56.5
Sabra11G0048300 Salix brachista HOM05D003819 ORTHO05D005291 6.6e-227 791.2 708 57.1
TPR.G4345 Trifolium pratense HOM05D003819 ORTHO05D005291 1.5e-226 790.0 711 58.1
Duzib235G0786 Durio zibethinus HOM05D003819 ORTHO05D005291 1.9e-226 789.6 710 56.9
Ca_18872_v3 Cicer arietinum L. HOM05D003819 ORTHO05D005291 4.3e-226 788.5 712 57.7
Sc21g0004140 Simmondsia chinensis HOM05D003819 ORTHO05D005291 7.3e-226 787.7 715 58.7
Lj3g0009870 Lotus japonicus HOM05D003819 ORTHO05D005291 2.1e-225 786.2 716 57.8
Glyma.06G277000 Glycine max HOM05D003819 ORTHO05D005291 3.6e-225 785.4 718 57.9
AL4G41180 Arabidopsis lyrata HOM05D003819 ORTHO05D005291 4.8e-225 785.0 720 56.5
BraA04t18686Z Brassica rapa HOM05D003819 ORTHO05D005291 6.2e-225 784.6 713 56.7
COL.COLO4_31287 Corchorus olitorius HOM05D003819 ORTHO05D005291 1.1e-224 783.9 712 56.5
BcaB06g29258 Brassica carinata HOM05D003819 ORTHO05D005291 1.4e-224 783.5 716 55.4
A04p32330 Brassica napus HOM05D003819 ORTHO05D005291 3.1e-224 782.3 713 56.4
BcaC02g12429 Brassica carinata HOM05D003819 ORTHO05D005291 6.9e-224 781.2 743 54.8
Medtr4g080020 Medicago truncatula HOM05D003819 ORTHO05D005291 6.9e-224 781.2 715 57.3
BcaC02g07227 Brassica carinata HOM05D003819 ORTHO05D005291 1.5e-223 780.0 717 55.9
C04p69840 Brassica napus HOM05D003819 ORTHO05D005291 1.5e-223 780.0 717 55.9
BolC4t28484H Brassica oleracea HOM05D003819 ORTHO05D005291 1.5e-223 780.0 717 55.9
THA.LOC104802258 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 5.8e-223 778.1 714 57.0
CARHR137760 Cardamine hirsuta HOM05D003819 ORTHO05D005291 1.7e-222 776.5 718 56.5
AT2G42620 Arabidopsis thaliana HOM05D003819 ORTHO05D005291 2.2e-222 776.2 715 56.4
Psat7g136560 Pisum sativum HOM05D003819 ORTHO05D005291 1.0e-219 767.3 738 56.5
EL10Ac9g20949 Beta vulgaris HOM05D003819 ORTHO05D005291 1.1e-218 763.8 717 57.7
TWI14G0201 Tripterygium wilfordii HOM05D003819 ORTHO05D005291 2.5e-218 762.7 710 56.9
QL05p047385 Quercus lobata HOM05D003819 ORTHO05D005291 2.1e-217 759.6 707 55.4
Dinv16776 Davidia involucrata HOM05D003819 ORTHO05D005291 1.5e-215 753.4 707 56.2
AUR62042109 Chenopodium quinoa HOM05D003819 ORTHO05D005291 2.9e-214 749.2 719 55.4
PSO229G0146 Papaver somniferum HOM05D003819 ORTHO05D005291 2.9e-214 749.2 721 53.7
Gorai.010G159500 Gossypium raimondii HOM05D003819 ORTHO05D005291 5.5e-213 745.0 711 54.9
Ah.01g003580 Amaranthus hybridus HOM05D003819 ORTHO05D005291 4.6e-212 741.9 720 56.2
Gohir.A06G131200 Gossypium hirsutum HOM05D003819 ORTHO05D005291 5.1e-211 738.4 711 54.6
CiPaw.09G070200 Carya illinoinensis HOM05D003819 ORTHO05D005291 6.7e-211 738.0 713 54.6
Haze_13379 Corylus avellana HOM05D003819 ORTHO05D005291 1.6e-209 733.4 707 56.4
Ciclev10017759m.g Citrus clementina HOM05D003819 ORTHO05D005291 3.1e-208 729.2 714 54.1
vmacro12379 Vaccinium macrocarpon HOM05D003819 ORTHO05D005291 9.0e-208 727.6 719 54.9
Thhalv10017925m.g Eutrema salsugineum HOM05D003819 ORTHO05D005291 1.6e-201 706.8 715 53.6
CDE10G0290 Ceratophyllum demersum HOM05D003819 ORTHO05D005291 5.9e-199 698.4 712 53.4
Atru.chr10.1659 Acer truncatum HOM05D003819 ORTHO05D005291 2.2e-198 696.4 709 52.9
Gohir.D10G037300 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.1e-194 684.1 702 51.3
Gohir.D06G137250 Gossypium hirsutum HOM05D003819 ORTHO05D005291 3.3e-194 682.6 709 52.3
Gorai.011G039300 Gossypium raimondii HOM05D003819 ORTHO05D005291 4.3e-194 682.2 702 51.3
Lj3g0006196 Lotus japonicus HOM05D003819 ORTHO05D005291 5.3e-192 675.2 684 54.2
Nn1g09185 Nelumbo nucifera HOM05D003819 ORTHO05D005291 4.2e-189 665.6 573 59.2
Gohir.A10G036700 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.0e-187 661.0 677 51.7
AUR62040526 Chenopodium quinoa HOM05D003819 ORTHO05D005291 1.1e-184 651.0 691 51.8
THA.LOC104813346 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 4.2e-181 639.0 712 47.5
SEGI_05136 Sequoiadendron giganteum HOM05D003819 ORTHO05D005291 9.4e-181 637.9 841 43.5
ATR0602G021 Amborella trichopoda HOM05D003819 ORTHO05D005291 1.0e-179 634.4 713 48.5
Dinv40684 Davidia involucrata HOM05D003819 ORTHO05D005291 1.0e-174 617.8 719 49.7
Zm00001eb376660 Zea mays HOM05D003819 ORTHO05D005291 1.1e-168 597.8 738 46.5
Zm00001eb270950 Zea mays HOM05D003819 ORTHO05D005291 1.4e-168 597.4 735 46.3
Os06g0154200 Oryza sativa ssp. japonica HOM05D003819 ORTHO05D005291 5.3e-168 595.5 743 45.9
Haze_06225 Corylus avellana HOM05D003819 ORTHO05D005291 3.0e-163 579.7 692 47.0
Actinidia10955 Actinidia chinensis HOM05D003819 ORTHO05D005291 5.2e-163 578.9 495 59.6
Carub.0004s2507 Capsella rubella HOM05D003819 ORTHO05D005291 2.8e-153 546.6 558 51.6
Mapoly0113s0006 Marchantia polymorpha HOM05D003819 ORTHO05D005291 4.5e-151 539.3 759 41.5
Thecc.06G169900 Theobroma cacao HOM05D003819 ORTHO05D005291 2.0e-146 523.9 522 52.7
Pp3c17_1180 Physcomitrium patens HOM05D003819 ORTHO05D005291 4.6e-143 512.7 812 39.0
SMO118G0454 Selaginella moellendorffii HOM05D003819 ORTHO05D005291 3.3e-141 506.5 728 41.1
unitig_85.g27374 Utricularia gibba HOM05D003819 ORTHO05D005291 3.9e-118 429.9 360 60.6
RcHm_v2.0_Chr2g0128411 Rosa chinensis HOM05D003819 ORTHO05D005291 7.3e-117 425.6 362 61.0
Lj3g0028116 Lotus japonicus HOM05D003819 ORTHO05D005291 1.5e-109 401.4 429 52.2
SHI10509 Sapria himalayana HOM05D003819 ORTHO05D005291 2.3e-102 377.5 376 52.7
unitig_85.g27373 Utricularia gibba HOM05D003819 ORTHO05D005291 2.3e-102 377.5 323 58.5
AagrBONN_evm.TU.Sc2ySwM_228.1793 Anthoceros agrestis HOM05D003819 ORTHO05D005291 8.7e-102 375.6 918 30.4
RcHm_v2.0_Chr2g0128401 Rosa chinensis HOM05D003819 ORTHO05D005291 8.1e-100 369.0 334 57.2
Oeu053232.1 Olea europaea HOM05D003819 ORTHO05D005291 4.3e-93 346.7 417 49.2
Thecc.K0007200 Theobroma cacao HOM05D003819 ORTHO05D005291 7.9e-87 325.9 231 68.8
Atru.chr11.57 Acer truncatum HOM05D003819 ORTHO05D005291 3.9e-78 297.0 437 41.6
Cfa000614 Carpinus fangiana HOM05D003819 ORTHO05D005291 9.7e-69 265.8 412 40.0
A05p03380 Brassica napus HOM05D003819 ORTHO05D005291 7.5e-53 213.0 177 61.6
Cc02_g34240 Coffea canephora HOM05D003819 ORTHO05D023588 1.7e-44 185.3 85 96.5
Nn2g14348 Nelumbo nucifera HOM05D003819 ORTHO05D023588 8.3e-44 183.0 146 58.2
Ciclev10026180m.g Citrus clementina HOM05D003819 ORTHO05D005291 9.1e-43 179.5 191 51.3
Dinv24544 Davidia involucrata HOM05D003819 ORTHO05D005291 3.0e-38 164.5 141 59.6
AUR62037398 Chenopodium quinoa HOM05D003819 ORTHO05D005291 7.0e-35 153.3 100 74.0
Cc00_g06350 Coffea canephora HOM05D003819 ORTHO05D023588 2.9e-28 131.3 171 46.2
Nn6g34429 Nelumbo nucifera HOM05D003819 ORTHO05D019686 1.9e-27 128.6 171 45.0
Aqoxy450s002 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 1.3e-25 122.5 101 54.5
Aqoxy7G03214 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 1.3e-25 122.5 101 54.5
A05p03390 Brassica napus HOM05D003819 ORTHO05D019686 1.5e-24 119.0 93 55.9
Lalb_Chr14g0367511 Lupinus albus HOM05D003819 ORTHO05D005291 1.4e-22 112.5 78 64.1
Nn1g05661 Nelumbo nucifera HOM05D003819 ORTHO05D005291 1.4e-22 112.5 77 67.5
FvH4_4g05521 Fragaria vesca HOM05D003819 ORTHO05D005291 1.2e-21 109.4 211 35.1
FvH4_2g05661 Fragaria vesca HOM05D003819 ORTHO05D025473 2.6e-21 108.2 113 52.2
Nn1g05873 Nelumbo nucifera HOM05D003819 ORTHO05D005291 7.5e-21 106.7 81 66.7
Psat3g013160 Pisum sativum HOM05D003819 ORTHO05D005291 6.4e-20 103.6 173 34.7
FvH4_2g12921 Fragaria vesca HOM05D003819 ORTHO05D025473 2.4e-19 101.7 94 55.3
Mapoly0086s0086 Marchantia polymorpha HOM05D003819 ORTHO05D038376 6.0e-18 97.1 455 24.4
Aqoxy450s003 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 7.8e-18 96.7 96 53.1
Aqoxy7G03213 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 7.8e-18 96.7 96 53.1
Haze_22749 Corylus avellana HOM05D003819 ORTHO05D005291 2.5e-16 91.7 93 50.5
AagrBONN_evm.TU.Sc2ySwM_228.4816 Anthoceros agrestis HOM05D003819 ORTHO05D038376 8.1e-15 86.7 375 26.7
Nn3g18421 Nelumbo nucifera HOM05D003819 ORTHO05D019686 4.9e-12 77.4 54 61.1
Psat7g136520 Pisum sativum HOM05D003819 ORTHO05D005291 4.9e-12 77.4 80 53.8
C04p03970 Brassica napus HOM05D003819 ORTHO05D032918 1.1e-11 76.3 59 61.0
BcaC02g12428 Brassica carinata HOM05D003819 ORTHO05D032918 1.9e-11 75.5 68 54.4
Nn1g05663 Nelumbo nucifera HOM05D003819 ORTHO05D019686 1.9e-11 75.5 54 61.1
Nn5g28220 Nelumbo nucifera HOM05D003819 ORTHO05D019686 2.1e-10 72.0 51 60.8
Psat1g205040 Pisum sativum HOM05D003819 ORTHO05D005291 4.6e-10 70.9 211 29.9
Haze_02876 Corylus avellana HOM05D000448 ORTHO05D000291 7.8e-10 70.1 48 70.8
BolC4t22033H Brassica oleracea HOM05D003819 ORTHO05D032918 1.3e-09 69.3 59 55.9
COL.COLO4_26644 Corchorus olitorius HOM05D001219 ORTHO05D001017 7.3e-08 63.5 279 25.1
Thecc.06G037400 Theobroma cacao HOM05D001219 ORTHO05D001017 2.4e-06 58.5 258 25.2
ClCG06G005660 Citrullus lanatus HOM05D002762 ORTHO05D004643 4.0e-06 57.8 115 35.7
Phvul.003G097600 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 5.2e-06 57.4 266 27.1


User provided reference genes

Program Settings