Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 1.4e-117 426.4 231 100.0
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 1.7e-43 180.3 155 60.6
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 1.6e-41 173.7 166 54.8
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 2.1e-41 173.3 155 58.1
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 2.8e-41 172.9 151 56.3
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 6.9e-40 168.3 156 52.6
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 7.6e-39 164.9 233 42.9
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 9.9e-39 164.5 159 52.8
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 1.3e-38 164.1 155 56.1
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 1.7e-38 163.7 164 52.4
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 2.9e-38 162.9 170 51.2
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 4.9e-38 162.2 165 52.7
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 1.1e-37 161.0 144 54.9
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 1.9e-37 160.2 164 51.2
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 2.4e-37 159.8 149 53.0
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 3.2e-37 159.5 162 52.5
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 3.2e-37 159.5 160 52.5
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 3.2e-37 159.5 145 53.8
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 3.2e-37 159.5 175 49.1
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 7.1e-37 158.3 140 55.7
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 9.3e-37 157.9 234 41.5
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 1.2e-36 157.5 142 54.9
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 2.7e-36 156.4 139 55.4
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 3.5e-36 156.0 170 49.4
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 3.5e-36 156.0 154 54.5
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 4.6e-36 155.6 148 52.7
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 6.0e-36 155.2 208 46.2
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 6.0e-36 155.2 220 42.7
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 7.8e-36 154.8 164 50.6
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 7.8e-36 154.8 149 50.3
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 7.8e-36 154.8 241 40.7
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 1.0e-35 154.5 224 41.5
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 1.0e-35 154.5 167 46.7
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 2.3e-35 153.3 161 49.1
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 3.9e-35 152.5 176 46.0
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 3.9e-35 152.5 143 52.4
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 8.7e-35 151.4 147 51.7
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 8.7e-35 151.4 153 49.7
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 1.1e-34 151.0 163 50.3
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 1.1e-34 151.0 172 46.5
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 1.5e-34 150.6 166 47.0
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 1.5e-34 150.6 156 53.2
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 1.5e-34 150.6 157 51.0
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 1.9e-34 150.2 152 52.0
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 3.3e-34 149.4 174 48.3
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 5.6e-34 148.7 147 52.4
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 2.1e-33 146.7 150 52.7
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 6.2e-33 145.2 152 49.3
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 1.1e-32 144.4 145 53.1
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 1.1e-32 144.4 145 49.0
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.4e-32 144.1 149 51.0
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 1.4e-32 144.1 149 51.0
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 1.4e-32 144.1 168 47.6
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 4.0e-32 142.5 149 50.3
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 4.0e-32 142.5 139 52.5
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 4.0e-32 142.5 146 50.0
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 5.3e-32 142.1 139 51.1
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 9.0e-32 141.4 151 51.7
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 1.2e-31 141.0 146 50.0
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 1.3e-30 137.5 145 52.4
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 2.9e-30 136.3 146 52.7
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 4.9e-30 135.6 157 49.0
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 4.9e-30 135.6 148 52.7
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 8.4e-30 134.8 146 52.1
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 8.4e-30 134.8 157 48.4
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 8.4e-30 134.8 157 49.0
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 2.4e-29 133.3 157 47.8
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 2.4e-29 133.3 157 47.8
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 2.4e-29 133.3 144 51.4
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 4.2e-29 132.5 148 48.6
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 4.2e-29 132.5 160 48.8
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 2.7e-28 129.8 169 44.4
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 7.9e-28 128.3 150 48.0
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 1.0e-27 127.9 147 49.7
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 2.8e-25 119.8 176 39.8
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 2.4e-24 116.7 147 39.5
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 5.3e-24 115.5 152 40.8
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 2.0e-23 113.6 169 37.3
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 3.4e-23 112.8 158 39.2
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.3e-22 110.9 146 39.0
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.7e-22 110.5 149 40.9
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 2.2e-22 110.2 152 39.5
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 2.2e-22 110.2 158 41.8
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 4.9e-22 109.0 145 41.4
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 6.4e-22 108.6 152 38.8
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 1.1e-21 107.8 152 40.8
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 1.4e-21 107.5 152 40.1
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 2.5e-21 106.7 155 35.5
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 3.2e-21 106.3 147 39.5
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 3.2e-21 106.3 147 39.5
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 3.2e-21 106.3 153 41.2
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 4.2e-21 105.9 147 38.1
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 5.5e-21 105.5 149 38.9
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 1.6e-20 104.0 145 40.7
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 2.1e-20 103.6 144 36.8
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 2.7e-20 103.2 143 39.9
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 4.6e-20 102.4 145 40.0
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 6.0e-20 102.1 143 38.5
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 6.0e-20 102.1 163 36.8
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 7.9e-20 101.7 143 39.9
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 1.0e-19 101.3 146 37.7
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 1.0e-19 101.3 148 37.2
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 1.3e-19 100.9 145 38.6
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 1.3e-19 100.9 145 38.6
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 3.9e-19 99.4 143 39.2
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 3.9e-19 99.4 80 57.5
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 5.1e-19 99.0 143 38.5
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 5.1e-19 99.0 145 37.2
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 8.7e-19 98.2 147 38.1
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 5.6e-18 95.5 149 36.9
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 5.6e-18 95.5 116 46.6
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 7.4e-18 95.1 148 33.8
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 2.1e-17 93.6 149 35.6
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 4.8e-17 92.4 145 36.6
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 6.2e-17 92.0 145 35.2
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 6.2e-17 92.0 132 42.4
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.1e-16 91.3 143 37.8
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 2.4e-16 90.1 151 36.4
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 3.1e-16 89.7 151 36.4
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 4.0e-16 89.4 151 35.8
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 4.0e-16 89.4 151 35.8
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 4.0e-16 89.4 149 34.9
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 4.0e-16 89.4 149 34.9
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 6.9e-16 88.6 147 35.4
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 6.9e-16 88.6 151 35.8
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 9.0e-16 88.2 148 35.8
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 1.2e-15 87.8 145 33.8
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 2.6e-15 86.7 135 39.3
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 4.5e-15 85.9 151 35.8
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 5.8e-15 85.5 143 34.3
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 5.8e-15 85.5 148 34.5
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 5.8e-15 85.5 135 35.6
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 7.6e-15 85.1 144 36.8
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 1.3e-14 84.3 148 33.8
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.3e-14 84.3 108 39.8
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 2.9e-14 83.2 135 35.6
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 2.9e-14 83.2 139 33.8
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 3.8e-14 82.8 148 35.8
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 4.9e-14 82.4 148 33.1
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 4.9e-14 82.4 154 34.4
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 6.5e-14 82.0 148 33.1
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 3.2e-13 79.7 152 34.2
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 4.2e-13 79.3 149 34.9
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 4.2e-13 79.3 149 34.9
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 7.1e-13 78.6 140 36.4
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 9.3e-13 78.2 149 34.2
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 9.3e-13 78.2 149 34.2
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 2.7e-12 76.6 143 32.2
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 4.6e-12 75.9 149 32.9
Actinidia34308 Actinidia chinensis HOM05D003663 ORTHO05D005327 3.0e-11 73.2 94 45.7
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 6.7e-11 72.0 100 38.0
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 1.1e-10 71.2 93 39.8
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 1.5e-10 70.9 110 37.3
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 9.7e-10 68.2 132 31.8
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 1.6e-09 67.4 93 37.6
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 4.1e-08 62.8 102 35.3
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 1.5e-07 60.8 104 35.6
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 2.0e-07 60.5 108 34.3
SMO220G0003 Selaginella moellendorffii HOM05D002232 ORTHO05D002323 6.5e-06 55.5 112 30.4


User provided reference genes

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