Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g28190 Coffea canephora HOM05D002598 ORTHO05D028551 2.0e-57 225.7 126 100.0
Cc01_g05200 Coffea canephora HOM05D002598 ORTHO05D003130 5.8e-49 197.6 110 99.1
Aqoxy5G04166 Aquilegia oxysepala HOM05D002598 ORTHO05D003130 4.4e-25 118.2 124 53.2
Haze_23015 Corylus avellana HOM05D002598 ORTHO05D003130 1.7e-24 116.3 114 57.9
Hma1.2p1_0074F.1_g039040 Hydrangea macrophylla HOM05D002598 ORTHO05D003130 3.8e-24 115.2 116 58.6
MD11G1016800 Malus domestica HOM05D002598 ORTHO05D003130 6.4e-24 114.4 121 48.8
Dinv36321 Davidia involucrata HOM05D002598 ORTHO05D003130 2.4e-23 112.5 115 57.4
Prupe.6G014700 Prunus persica HOM05D002598 ORTHO05D003130 2.4e-23 112.5 121 51.2
RcHm_v2.0_Chr5g0080571 Rosa chinensis HOM05D002598 ORTHO05D003130 1.2e-22 110.2 122 53.3
TPR.G38575 Trifolium pratense HOM05D002598 ORTHO05D003130 1.6e-22 109.8 118 49.2
CiPaw.14G129400 Carya illinoinensis HOM05D002598 ORTHO05D003130 4.6e-22 108.2 122 54.1
Eucgr.B03642 Eucalyptus grandis HOM05D002598 ORTHO05D003130 4.6e-22 108.2 131 47.3
TAR362G0246 Trochodendron aralioides HOM05D002598 ORTHO05D003130 1.3e-21 106.7 113 56.6
DCAR_024389 Daucus carota HOM05D002598 ORTHO05D003130 1.7e-21 106.3 128 53.1
QL04p060728 Quercus lobata HOM05D002598 ORTHO05D003130 1.7e-21 106.3 85 58.8
QL04p079433 Quercus lobata HOM05D002598 ORTHO05D003130 2.3e-21 105.9 84 58.3
Manes.17G118000 Manihot esculenta HOM05D002598 ORTHO05D003130 3.0e-21 105.5 115 53.9
MBI03_g11911_MAGBIO Magnolia biondii HOM05D002598 ORTHO05D003130 8.7e-21 104.0 113 51.3
Duzib128G0393 Durio zibethinus HOM05D002598 ORTHO05D003130 1.5e-20 103.2 134 47.8
FvH4_3g44260 Fragaria vesca HOM05D002598 ORTHO05D003130 4.3e-20 101.7 122 50.0
Psat6g226520 Pisum sativum HOM05D002598 ORTHO05D003130 4.3e-20 101.7 118 45.8
FAN11G3610 Fragaria x ananassa HOM05D002598 ORTHO05D003130 1.3e-19 100.1 122 49.2
Sc22g0005180 Simmondsia chinensis HOM05D002598 ORTHO05D003130 2.1e-19 99.4 121 46.3
Actinidia01842 Actinidia chinensis HOM05D002598 ORTHO05D003130 2.8e-19 99.0 76 60.5
Sed0003342 Sechium edule HOM05D002598 ORTHO05D003130 3.6e-19 98.6 122 50.0
ClCG11G007030 Citrullus lanatus HOM05D002598 ORTHO05D003130 8.1e-19 97.4 122 48.4
Peaxi162Scf00048g01725 Petunia axillaris HOM05D002598 ORTHO05D003130 8.1e-19 97.4 115 49.6
Gohir.D08G221900 Gossypium hirsutum HOM05D002598 ORTHO05D003130 1.1e-18 97.1 77 61.0
Gorai.004G235600 Gossypium raimondii HOM05D002598 ORTHO05D003130 1.1e-18 97.1 77 61.0
Lalb_Chr06g0164451 Lupinus albus HOM05D002598 ORTHO05D003130 1.4e-18 96.7 118 48.3
Hund18841 Selenicereus undatus HOM05D002598 ORTHO05D003130 1.4e-18 96.7 121 44.6
FAN25G2153 Fragaria x ananassa HOM05D002598 ORTHO05D003130 2.4e-18 95.9 122 48.4
CAN.G809.66 Capsicum annuum HOM05D002598 ORTHO05D003130 4.0e-18 95.1 116 50.0
Cfa010285 Carpinus fangiana HOM05D002598 ORTHO05D003130 4.0e-18 95.1 75 64.0
BcaB03g16611 Brassica carinata HOM05D002598 ORTHO05D003130 5.3e-18 94.7 130 43.8
CsaV3_2G034180 Cucumis sativus L. HOM05D002598 ORTHO05D003130 5.3e-18 94.7 122 47.5
Gohir.A08G204600 Gossypium hirsutum HOM05D002598 ORTHO05D003130 5.3e-18 94.7 77 59.7
TPR.G18797 Trifolium pratense HOM05D002598 ORTHO05D003130 6.9e-18 94.4 112 45.5
A07p02490 Brassica napus HOM05D002598 ORTHO05D003130 9.0e-18 94.0 126 46.0
BraA07t28045Z Brassica rapa HOM05D002598 ORTHO05D003130 9.0e-18 94.0 126 46.0
Actinidia06866 Actinidia chinensis HOM05D002598 ORTHO05D003130 1.2e-17 93.6 86 59.3
Nitab4.5_0011845g0010 Nicotiana tabacum HOM05D002598 ORTHO05D003130 1.2e-17 93.6 124 46.8
PGR102G0507 Punica granatum HOM05D002598 ORTHO05D003130 2.0e-17 92.8 84 56.0
BcaC06g36386 Brassica carinata HOM05D002598 ORTHO05D003130 4.4e-17 91.7 126 45.2
C07p04660 Brassica napus HOM05D002598 ORTHO05D003130 4.4e-17 91.7 126 45.2
BolC7t40867H Brassica oleracea HOM05D002598 ORTHO05D003130 4.4e-17 91.7 126 45.2
GSVIVG01037396001 Vitis vinifera HOM05D002598 ORTHO05D003130 5.8e-17 91.3 82 54.9
SalBow2G0823 Salvia bowleyana HOM05D002598 ORTHO05D003130 7.6e-17 90.9 112 50.0
THA.LOC104811191 Tarenaya hassleriana HOM05D002598 ORTHO05D003130 7.6e-17 90.9 114 50.0
HanXRQChr02g0056671 Helianthus annuus HOM05D002598 ORTHO05D003130 1.3e-16 90.1 131 47.3
arahy.Tifrunner.gnm1.ann1.EL0I67 Arachis hypogaea HOM05D002598 ORTHO05D003130 1.7e-16 89.7 88 50.0
Nn4g25047 Nelumbo nucifera HOM05D002598 ORTHO05D003130 2.2e-16 89.4 128 43.0
Carub.0003s3239 Capsella rubella HOM05D002598 ORTHO05D003130 2.9e-16 89.0 75 57.3
CDE04G1968 Ceratophyllum demersum HOM05D002598 ORTHO05D003130 2.9e-16 89.0 117 45.3
Medtr1g110560 Medicago truncatula HOM05D002598 ORTHO05D003130 3.8e-16 88.6 124 43.5
Migut.D00544 Erythranthe guttata HOM05D002598 ORTHO05D003130 4.9e-16 88.2 115 47.0
TAR633G0485 Trochodendron aralioides HOM05D002598 ORTHO05D003130 4.9e-16 88.2 144 44.4
ECA233G6155 Erigeron canadensis HOM05D002598 ORTHO05D003130 6.4e-16 87.8 125 46.4
Thhalv10022567m.g Eutrema salsugineum HOM05D002598 ORTHO05D003130 6.4e-16 87.8 82 51.2
Thecc.05G325500 Theobroma cacao HOM05D002598 ORTHO05D003130 1.9e-15 86.3 125 46.4
arahy.Tifrunner.gnm1.ann1.N6X2T2 Arachis hypogaea HOM05D002598 ORTHO05D003130 2.4e-15 85.9 117 46.2
Rhsim13G0227000 Rhododendron simsii HOM05D002598 ORTHO05D003130 2.4e-15 85.9 73 60.3
AL3G51460 Arabidopsis lyrata HOM05D002598 ORTHO05D003130 3.2e-15 85.5 81 51.9
Sp3g31630 Schrenkiella parvula HOM05D002598 ORTHO05D003130 4.2e-15 85.1 76 51.3
vmacro21749 Vaccinium macrocarpon HOM05D002598 ORTHO05D003130 4.2e-15 85.1 76 57.9
VMungo0720G2693 Vigna mungo HOM05D002598 ORTHO05D003130 4.2e-15 85.1 118 44.9
Glyma.13G335000 Glycine max HOM05D002598 ORTHO05D003130 1.6e-14 83.2 85 47.1
Phvul.007G004700 Phaseolus vulgaris HOM05D002598 ORTHO05D003130 1.6e-14 83.2 80 50.0
AT2G18220 Arabidopsis thaliana HOM05D002598 ORTHO05D003130 2.1e-14 82.8 127 42.5
Lsat_1_v5_gn_6_50761 Lactuca sativa HOM05D002598 ORTHO05D003130 2.1e-14 82.8 133 40.6
FAN21G1479 Fragaria x ananassa HOM05D002598 ORTHO05D003130 3.5e-14 82.0 75 54.7
Aa31LG8G15770 Aethionema arabicum HOM05D002598 ORTHO05D003130 6.0e-14 81.3 117 43.6
SHI30489 Sapria himalayana HOM05D002598 ORTHO05D003130 1.0e-13 80.5 67 56.7
Atru.chr2.2210 Acer truncatum HOM05D002598 ORTHO05D003130 1.3e-13 80.1 79 54.4
PSO063G4785 Papaver somniferum HOM05D002598 ORTHO05D003130 1.3e-13 80.1 87 50.6
PSO170G5574 Papaver somniferum HOM05D002598 ORTHO05D003130 1.3e-13 80.1 87 50.6
Lj2A672T48 Lonicera japonica HOM05D002598 ORTHO05D003130 1.7e-13 79.7 76 51.3
PGSC0003DMG400017744 Solanum tuberosum HOM05D002598 ORTHO05D003130 2.3e-13 79.3 121 42.1
Potri.003G213450 Populus trichocarpa HOM05D002598 ORTHO05D028551 5.1e-13 78.2 72 54.2
Ca_11394_v3 Cicer arietinum L. HOM05D002598 ORTHO05D003130 6.6e-13 77.8 86 46.5
Ca_30896_v3 Cicer arietinum L. HOM05D002598 ORTHO05D003130 6.6e-13 77.8 86 46.5
Solyc02g081680.4 Solanum lycopersicum HOM05D002598 ORTHO05D003130 1.1e-12 77.0 121 42.1
MD03G1015600 Malus domestica HOM05D002598 ORTHO05D028551 1.5e-12 76.6 86 45.3
SGA_v2.0_scaffold1G00764 Striga asiatica HOM05D002598 ORTHO05D003130 1.5e-12 76.6 116 42.2
Oeu043307.2 Olea europaea HOM05D002598 ORTHO05D003130 2.5e-12 75.9 123 41.5
Sopen02g026290 Solanum pennellii HOM05D002598 ORTHO05D003130 8.1e-11 70.9 121 39.7
HPP92_014667 Vanilla planifolia HOM05D002598 ORTHO05D003130 2.4e-10 69.3 112 38.4
ATR0609G119 Amborella trichopoda HOM05D002598 ORTHO05D003130 5.3e-10 68.2 116 41.4
Ciclev10014393m.g Citrus clementina HOM05D002598 ORTHO05D003130 1.2e-09 67.0 45 68.9
COL.COLO4_05528 Corchorus olitorius HOM05D002598 ORTHO05D003130 1.5e-09 66.6 122 43.4
unitig_22.g5309 Utricularia gibba HOM05D002598 ORTHO05D003130 1.5e-09 66.6 78 47.4
TWI23G0969 Tripterygium wilfordii HOM05D002598 ORTHO05D003130 2.6e-09 65.9 51 56.9
Ah.11g042920 Amaranthus hybridus HOM05D002598 ORTHO05D003130 4.5e-09 65.1 116 35.3
Potri.001G012800 Populus trichocarpa HOM05D002598 ORTHO05D003130 5.8e-09 64.7 51 60.8
MELO3C008200.2 Cucumis melo HOM05D002598 ORTHO05D003130 2.9e-08 62.4 93 46.2
SEGI_31704 Sequoiadendron giganteum HOM05D002598 ORTHO05D003130 6.4e-08 61.2 117 34.2
Cpa.g.sc235.7 Carica papaya HOM05D002598 ORTHO05D028551 1.1e-07 60.5 94 44.7
AUR62020148 Chenopodium quinoa HOM05D002598 ORTHO05D003130 3.2e-07 58.9 121 35.5
Zm00001eb220970 Zea mays HOM05D002598 ORTHO05D003130 3.2e-07 58.9 113 36.3
AUR62001631 Chenopodium quinoa HOM05D002598 ORTHO05D003130 5.5e-07 58.2 123 36.6
Sabra01G0009500 Salix brachista HOM05D002598 ORTHO05D003130 5.5e-07 58.2 50 56.0
CARHR108750 Cardamine hirsuta HOM05D002598 ORTHO05D003130 2.7e-06 55.8 50 52.0
EL10Ac7g16185 Beta vulgaris HOM05D002598 ORTHO05D003130 7.9e-06 54.3 66 40.9


User provided reference genes

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