Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g27920 Coffea canephora HOM05D005274 ORTHO05D006485 1.5e-95 352.8 172 100.0
Cc00_g24660 Coffea canephora HOM05D005274 ORTHO05D006485 2.5e-63 245.7 159 79.9
Cc06_g13990 Coffea canephora HOM05D005274 ORTHO05D006485 2.4e-61 239.2 159 77.4
SGA_v2.0_scaffold32G13165 Striga asiatica HOM05D005274 ORTHO05D006485 1.1e-55 220.3 159 67.9
Migut.B00249 Erythranthe guttata HOM05D005274 ORTHO05D006485 2.8e-54 215.7 159 67.3
MSTRG.20092 Avicennia marina HOM05D005274 ORTHO05D006485 8.1e-54 214.2 159 66.0
Lj9A368G50 Lonicera japonica HOM05D005274 ORTHO05D006485 8.1e-54 214.2 162 65.4
Nitab4.5_0006090g0030 Nicotiana tabacum HOM05D005274 ORTHO05D006485 8.1e-54 214.2 159 66.7
Nitab4.5_0004836g0020 Nicotiana tabacum HOM05D005274 ORTHO05D006485 2.4e-53 212.6 159 66.0
Oeu034171.3 Olea europaea HOM05D005274 ORTHO05D006485 5.3e-53 211.5 159 66.0
Peaxi162Scf00102g01534 Petunia axillaris HOM05D005274 ORTHO05D006485 2.6e-52 209.1 159 64.8
CAN.G792.79 Capsicum annuum HOM05D005274 ORTHO05D006485 4.5e-52 208.4 159 64.8
Oeu020806.2 Olea europaea HOM05D005274 ORTHO05D006485 1.7e-51 206.5 159 64.8
Solyc08g008040.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 1.7e-51 206.5 159 63.5
Sopen08g003920 Solanum pennellii HOM05D005274 ORTHO05D006485 1.7e-51 206.5 159 63.5
PGSC0003DMG400005779 Solanum tuberosum HOM05D005274 ORTHO05D006485 1.7e-51 206.5 159 64.2
TAR381G1230 Trochodendron aralioides HOM05D005274 ORTHO05D006485 1.7e-51 206.5 159 64.2
vmacro18391 Vaccinium macrocarpon HOM05D005274 ORTHO05D006485 1.7e-51 206.5 159 63.5
Dinv33272 Davidia involucrata HOM05D005274 ORTHO05D006485 3.8e-51 205.3 159 63.5
Lsat_1_v5_gn_2_86720 Lactuca sativa HOM05D005274 ORTHO05D006485 4.9e-51 204.9 158 62.0
HanXRQChr07g0200241 Helianthus annuus HOM05D005274 ORTHO05D006485 1.9e-50 203.0 159 59.1
SalBow6G5022 Salvia bowleyana HOM05D005274 ORTHO05D006485 1.2e-49 200.3 159 61.0
SalBow6G6215 Salvia bowleyana HOM05D005274 ORTHO05D006485 1.2e-49 200.3 159 61.0
CSS0033174 Camellia sinensis var. sinensis HOM05D005274 ORTHO05D006485 6.0e-49 198.0 159 63.5
TAR624G0372 Trochodendron aralioides HOM05D005274 ORTHO05D006485 1.0e-48 197.2 160 63.1
Rhsim08G0038500 Rhododendron simsii HOM05D005274 ORTHO05D006485 2.3e-48 196.1 159 59.1
unitig_744.g24245 Utricularia gibba HOM05D005274 ORTHO05D006485 3.0e-48 195.7 159 60.4
Nn8g40353 Nelumbo nucifera HOM05D005274 ORTHO05D006485 1.1e-47 193.7 159 56.6
GSVIVG01032972001 Vitis vinifera HOM05D005274 ORTHO05D006485 1.5e-47 193.4 159 59.7
Cpa.g.sc70.54 Carica papaya HOM05D005274 ORTHO05D006485 4.3e-47 191.8 159 60.4
DCAR_022112 Daucus carota HOM05D005274 ORTHO05D006485 1.1e-45 187.2 159 56.0
Potri.004G197200 Populus trichocarpa HOM05D005274 ORTHO05D006485 1.1e-45 187.2 159 57.2
Manes.11G112500 Manihot esculenta HOM05D005274 ORTHO05D006485 1.4e-45 186.8 159 57.2
Cfa007146 Carpinus fangiana HOM05D005274 ORTHO05D006485 1.8e-45 186.4 160 58.1
Medtr2g097630 Medicago truncatula HOM05D005274 ORTHO05D006485 2.4e-45 186.0 159 57.2
Sabra04G0133600 Salix brachista HOM05D005274 ORTHO05D006485 2.4e-45 186.0 159 57.2
TPR.G27812 Trifolium pratense HOM05D005274 ORTHO05D006485 3.1e-45 185.7 159 56.6
ECA238G2078 Erigeron canadensis HOM05D005274 ORTHO05D006485 4.0e-45 185.3 159 56.0
Aa31LG10G6820 Aethionema arabicum HOM05D005274 ORTHO05D006485 5.3e-45 184.9 165 52.1
Glyma.14G044800 Glycine max HOM05D005274 ORTHO05D006485 1.2e-44 183.7 159 56.0
Glyma.02G271800 Glycine max HOM05D005274 ORTHO05D006485 1.5e-44 183.3 159 57.2
Lalb_Chr10g0096401 Lupinus albus HOM05D005274 ORTHO05D006485 2.0e-44 183.0 159 56.6
VMungo1309G1271 Vigna mungo HOM05D005274 ORTHO05D006485 2.6e-44 182.6 159 57.2
QL02p069234 Quercus lobata HOM05D005274 ORTHO05D006485 4.5e-44 181.8 159 57.9
CiPaw.04G000800 Carya illinoinensis HOM05D005274 ORTHO05D006485 5.8e-44 181.4 160 57.5
Gohir.D11G068400 Gossypium hirsutum HOM05D005274 ORTHO05D006485 7.6e-44 181.0 159 58.5
Gorai.007G073200 Gossypium raimondii HOM05D005274 ORTHO05D006485 9.9e-44 180.6 159 58.5
Medtr5g071380 Medicago truncatula HOM05D005274 ORTHO05D006485 1.3e-43 180.3 159 55.3
Atru.chr6.2707 Acer truncatum HOM05D005274 ORTHO05D006485 2.9e-43 179.1 159 56.0
Ciclev10016162m.g Citrus clementina HOM05D005274 ORTHO05D006485 2.9e-43 179.1 159 55.3
Eucgr.I01592 Eucalyptus grandis HOM05D005274 ORTHO05D006485 2.9e-43 179.1 159 56.0
Psat2g056880 Pisum sativum HOM05D005274 ORTHO05D006485 2.9e-43 179.1 159 54.1
Sed0000255 Sechium edule HOM05D005274 ORTHO05D006485 4.9e-43 178.3 159 55.3
arahy.Tifrunner.gnm1.ann1.5GP605 Arachis hypogaea HOM05D005274 ORTHO05D006485 8.4e-43 177.6 159 54.7
Gohir.A11G064100 Gossypium hirsutum HOM05D005274 ORTHO05D006485 8.4e-43 177.6 159 57.9
arahy.Tifrunner.gnm1.ann1.T7P6Q4 Arachis hypogaea HOM05D005274 ORTHO05D006485 1.1e-42 177.2 159 54.1
FvH4_2g10500 Fragaria vesca HOM05D005274 ORTHO05D006485 1.1e-42 177.2 163 55.8
FAN15G2064 Fragaria x ananassa HOM05D005274 ORTHO05D006485 1.1e-42 177.2 163 55.8
FAN27G1266 Fragaria x ananassa HOM05D005274 ORTHO05D006485 1.1e-42 177.2 163 55.8
Thecc.04G049000 Theobroma cacao HOM05D005274 ORTHO05D006485 1.4e-42 176.8 159 57.2
HPP92_002470 Vanilla planifolia HOM05D005274 ORTHO05D006485 1.9e-42 176.4 158 54.4
Duzib187G0989 Durio zibethinus HOM05D005274 ORTHO05D006485 2.4e-42 176.0 159 56.6
Hma1.2p1_0474F.1_g160740 Hydrangea macrophylla HOM05D005274 ORTHO05D006485 4.2e-42 175.3 155 58.7
PGSC0003DMG400011003 Solanum tuberosum HOM05D005274 ORTHO05D006485 4.2e-42 175.3 159 58.5
Ca_26258_v3 Cicer arietinum L. HOM05D005274 ORTHO05D006485 5.5e-42 174.9 159 52.2
Aqoxy5G02491 Aquilegia oxysepala HOM05D005274 ORTHO05D006485 7.1e-42 174.5 159 52.2
FAN24G2993 Fragaria x ananassa HOM05D005274 ORTHO05D006485 7.1e-42 174.5 163 55.2
PSO063G1622 Papaver somniferum HOM05D005274 ORTHO05D006485 1.2e-41 173.7 159 52.8
RcHm_v2.0_Chr6g0267991 Rosa chinensis HOM05D005274 ORTHO05D006485 2.1e-41 172.9 163 54.6
ClCG01G008500 Citrullus lanatus HOM05D005274 ORTHO05D006485 7.9e-41 171.0 159 54.7
LjContig00564g0024425 Lotus japonicus HOM05D005274 ORTHO05D006485 7.9e-41 171.0 159 54.1
MD09G1264600 Malus domestica HOM05D005274 ORTHO05D006485 7.9e-41 171.0 163 52.1
PSO017G0788 Papaver somniferum HOM05D005274 ORTHO05D006485 7.9e-41 171.0 159 52.2
MELO3C005096.2 Cucumis melo HOM05D005274 ORTHO05D006485 3.9e-40 168.7 159 54.1
Thhalv10017887m.g Eutrema salsugineum HOM05D005274 ORTHO05D006485 3.9e-40 168.7 158 51.9
Carub.0004s1624 Capsella rubella HOM05D005274 ORTHO05D006485 5.1e-40 168.3 158 50.6
Sc14g0002660 Simmondsia chinensis HOM05D005274 ORTHO05D006485 5.1e-40 168.3 159 53.5
AUR62009346 Chenopodium quinoa HOM05D005274 ORTHO05D006485 6.7e-40 167.9 160 55.0
CsaV3_5G024970 Cucumis sativus L. HOM05D005274 ORTHO05D006485 8.7e-40 167.5 159 53.5
Phvul.005G158400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 8.7e-40 167.5 159 52.2
AL4G30540 Arabidopsis lyrata HOM05D005274 ORTHO05D006485 1.5e-39 166.8 158 50.6
AT2G34570 Arabidopsis thaliana HOM05D005274 ORTHO05D006485 2.5e-39 166.0 158 50.0
Hund29750 Selenicereus undatus HOM05D005274 ORTHO05D006485 2.5e-39 166.0 160 55.0
Hund29752 Selenicereus undatus HOM05D005274 ORTHO05D006485 2.5e-39 166.0 160 55.0
EL10Ac6g13414 Beta vulgaris HOM05D005274 ORTHO05D006485 4.3e-39 165.2 160 53.1
BolC4t23029H Brassica oleracea HOM05D005274 ORTHO05D006485 5.6e-39 164.9 159 50.9
THA.LOC104802536 Tarenaya hassleriana HOM05D005274 ORTHO05D006485 5.6e-39 164.9 159 52.2
BcaB01g06368 Brassica carinata HOM05D005274 ORTHO05D006485 7.4e-39 164.5 158 50.0
AUR62017870 Chenopodium quinoa HOM05D005274 ORTHO05D006485 7.4e-39 164.5 160 53.8
MD08G1181300 Malus domestica HOM05D005274 ORTHO05D006485 9.6e-39 164.1 162 50.6
CARHR128660 Cardamine hirsuta HOM05D005274 ORTHO05D006485 1.3e-38 163.7 158 48.7
Sp4g16830 Schrenkiella parvula HOM05D005274 ORTHO05D006485 1.6e-38 163.3 158 50.6
BcaC02g11519 Brassica carinata HOM05D005274 ORTHO05D006485 2.1e-38 162.9 158 50.6
A03p19190 Brassica napus HOM05D005274 ORTHO05D006485 4.8e-38 161.8 157 49.7
BraA03t11174Z Brassica rapa HOM05D005274 ORTHO05D006485 4.8e-38 161.8 157 49.7
Prupe.5G024800 Prunus persica HOM05D005274 ORTHO05D006485 4.8e-38 161.8 163 50.9
BcaC01g05789 Brassica carinata HOM05D005274 ORTHO05D006485 6.2e-38 161.4 157 49.7
BolC3t14622H Brassica oleracea HOM05D005274 ORTHO05D006485 6.2e-38 161.4 157 49.7
C03p22390 Brassica napus HOM05D005274 ORTHO05D006485 8.2e-38 161.0 157 49.7
Potri.009G159400 Populus trichocarpa HOM05D005274 ORTHO05D006485 1.4e-37 160.2 157 51.0
PGR142G3427 Punica granatum HOM05D005274 ORTHO05D006485 2.4e-37 159.5 159 49.7
CANSAT54G1155 Cannabis sativa HOM05D005274 ORTHO05D006485 3.1e-37 159.1 159 49.1
MD16G1246600 Malus domestica HOM05D005274 ORTHO05D006485 5.3e-37 158.3 163 49.1
SHI31386 Sapria himalayana HOM05D005274 ORTHO05D006485 6.9e-37 157.9 159 49.7
SHI33526 Sapria himalayana HOM05D005274 ORTHO05D006485 2.0e-36 156.4 159 49.7
Cc00_g29040 Coffea canephora HOM05D005274 ORTHO05D006485 1.9e-34 149.8 112 71.4
TWI32G1102 Tripterygium wilfordii HOM05D005274 ORTHO05D006485 7.9e-33 144.4 179 43.0
Os02g0468200 Oryza sativa ssp. japonica HOM05D005274 ORTHO05D006485 1.3e-32 143.7 161 46.0
SEGI_17090 Sequoiadendron giganteum HOM05D005274 ORTHO05D006485 1.3e-32 143.7 159 44.7
AagrBONN_evm.TU.Sc2ySwM_228.2974 Anthoceros agrestis HOM05D005274 ORTHO05D006485 5.1e-32 141.7 159 45.3
Zm00001eb319780 Zea mays HOM05D005274 ORTHO05D006485 5.1e-32 141.7 161 44.7
ATR1136G175 Amborella trichopoda HOM05D005274 ORTHO05D006485 1.1e-31 140.6 160 47.5
Nitab4.5_0000568g0280 Nicotiana tabacum HOM05D005274 ORTHO05D006485 9.7e-31 137.5 155 48.4
Pp3c2_27880 Physcomitrium patens HOM05D005274 ORTHO05D006485 6.3e-30 134.8 159 43.4
Mapoly0006s0036 Marchantia polymorpha HOM05D005274 ORTHO05D006485 4.1e-29 132.1 159 45.9
COL.COLO4_13388 Corchorus olitorius HOM05D005274 ORTHO05D006485 2.0e-28 129.8 134 50.0
AUR62037816 Chenopodium quinoa HOM05D005274 ORTHO05D006485 5.9e-28 128.3 159 44.0
SMO347G0017 Selaginella moellendorffii HOM05D005274 ORTHO05D006485 1.7e-27 126.7 160 44.4
Ah.10g032810 Amaranthus hybridus HOM05D005274 ORTHO05D006485 2.2e-27 126.3 159 42.8
C04p14460 Brassica napus HOM05D005274 ORTHO05D006485 8.5e-27 124.4 159 42.8
Sopen10g034190 Solanum pennellii HOM05D005274 ORTHO05D006485 3.2e-26 122.5 138 50.7
Actinidia19548 Actinidia chinensis HOM05D005274 ORTHO05D006485 7.9e-25 117.9 113 54.9
Solyc10g084740.3 Solanum lycopersicum HOM05D005274 ORTHO05D006485 6.7e-24 114.8 181 38.7
CBR_g8346 Chara braunii HOM05D005274 ORTHO05D006485 8.2e-22 107.8 155 40.0
Sabra10G0082800 Salix brachista HOM05D005274 ORTHO05D006485 1.8e-16 90.1 134 35.1
Phvul.005G025400 Phaseolus vulgaris HOM05D005274 ORTHO05D006485 1.1e-15 87.4 145 35.9
Sabra02G0148900 Salix brachista HOM05D005274 ORTHO05D006485 1.1e-15 87.4 134 34.3
MCO15G315 Micromonas commoda HOM05D005274 ORTHO05D006485 2.0e-15 86.7 155 34.2
Sabra07G0096200 Salix brachista HOM05D005274 ORTHO05D006765 2.6e-15 86.3 89 46.1
CDE04G1865 Ceratophyllum demersum HOM05D000386 ORTHO05D000406 1.7e-14 83.6 81 48.1
Cre11.g480800 Chlamydomonas reinhardtii HOM05D005274 ORTHO05D006485 1.2e-12 77.4 206 27.7
Sabra02G0153300 Salix brachista HOM05D005631 ORTHO05D006765 4.7e-09 65.5 44 61.4
Sabra07G0113400 Salix brachista HOM05D005274 ORTHO05D006485 5.2e-08 62.0 44 56.8
PGR142G3154 Punica granatum HOM05D005274 ORTHO05D006485 1.1e-07 60.8 69 43.5
Sabra16G0085100 Salix brachista HOM05D005274 ORTHO05D007424 1.1e-07 60.8 45 57.8


User provided reference genes

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