Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g27900 Coffea canephora HOM05D006980 ORTHO05D008704 1.1e-107 394.4 195 100.0
Cc02_g28460 Coffea canephora HOM05D006980 ORTHO05D008704 4.3e-96 355.9 215 86.0
CSS0041599 Camellia sinensis var. sinensis HOM05D006980 ORTHO05D008704 3.0e-57 226.9 223 55.2
MSTRG.19261 Avicennia marina HOM05D006980 ORTHO05D008704 2.6e-56 223.8 204 58.8
Dinv21206 Davidia involucrata HOM05D006980 ORTHO05D008704 9.8e-56 221.9 214 53.7
Nitab4.5_0000025g0100 Nicotiana tabacum HOM05D006980 ORTHO05D008704 1.4e-54 218.0 201 57.2
Oeu056884.1 Olea europaea HOM05D006980 ORTHO05D008704 1.8e-54 217.6 176 61.9
Solyc08g006170.1 Solanum lycopersicum HOM05D006980 ORTHO05D008704 2.7e-53 213.8 208 56.2
Nitab4.5_0003259g0020 Nicotiana tabacum HOM05D006980 ORTHO05D008704 3.5e-53 213.4 201 56.7
Actinidia05428 Actinidia chinensis HOM05D006980 ORTHO05D008704 1.7e-52 211.1 206 53.4
Sopen08g002140 Solanum pennellii HOM05D006980 ORTHO05D008704 1.7e-52 211.1 208 55.3
Peaxi162Scf00045g00156 Petunia axillaris HOM05D006980 ORTHO05D008704 5.0e-52 209.5 201 56.7
PGSC0003DMG401009543 Solanum tuberosum HOM05D006980 ORTHO05D008704 5.0e-52 209.5 211 55.0
Lsat_1_v5_gn_5_164841 Lactuca sativa HOM05D006980 ORTHO05D008704 2.5e-51 207.2 186 54.3
CAN.G2030.1 Capsicum annuum HOM05D006980 ORTHO05D008704 3.3e-51 206.8 208 54.8
ECA248G2176 Erigeron canadensis HOM05D006980 ORTHO05D008704 1.6e-50 204.5 214 51.4
Sc02g0000270 Simmondsia chinensis HOM05D006980 ORTHO05D008704 2.1e-50 204.1 206 54.4
SalBow3G1904 Salvia bowleyana HOM05D006980 ORTHO05D008704 2.8e-50 203.8 204 55.4
CAN.G137.42 Capsicum annuum HOM05D006980 ORTHO05D008704 1.0e-49 201.8 161 60.9
PSO541G2622 Papaver somniferum HOM05D006980 ORTHO05D008704 6.8e-49 199.1 216 48.6
SGA_v2.0_scaffold13G06715 Striga asiatica HOM05D006980 ORTHO05D008704 5.8e-48 196.1 199 52.8
CiPaw.09G014400 Carya illinoinensis HOM05D006980 ORTHO05D008704 2.9e-47 193.7 216 45.4
HanXRQChr02g0032651 Helianthus annuus HOM05D006980 ORTHO05D008704 3.7e-47 193.4 178 52.8
PSO675G7214 Papaver somniferum HOM05D006980 ORTHO05D008704 3.7e-47 193.4 211 47.9
Migut.J01034 Erythranthe guttata HOM05D006980 ORTHO05D008704 8.3e-47 192.2 200 52.5
Prupe.7G109800 Prunus persica HOM05D006980 ORTHO05D008704 1.1e-46 191.8 209 50.2
CANSAT64G1568 Cannabis sativa HOM05D006980 ORTHO05D008704 1.9e-46 191.0 201 48.8
QL07p038724 Quercus lobata HOM05D006980 ORTHO05D008704 2.4e-46 190.7 165 54.5
Lj2P137T25 Lonicera japonica HOM05D006980 ORTHO05D008704 4.1e-46 189.9 148 59.5
Lj1g0023344 Lotus japonicus HOM05D006980 ORTHO05D008704 4.1e-46 189.9 213 49.3
Rhsim03G0075000 Rhododendron simsii HOM05D006980 ORTHO05D008704 7.0e-46 189.1 223 48.0
TAR633G1277 Trochodendron aralioides HOM05D006980 ORTHO05D008704 2.0e-45 187.6 218 46.3
EL10Ac6g13708 Beta vulgaris HOM05D006980 ORTHO05D008704 4.6e-45 186.4 203 49.8
RcHm_v2.0_Chr3g0473791 Rosa chinensis HOM05D006980 ORTHO05D008704 4.6e-45 186.4 208 49.5
arahy.Tifrunner.gnm1.ann1.IK7M5W Arachis hypogaea HOM05D006980 ORTHO05D008704 1.7e-44 184.5 174 50.0
FAN05G0999 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.7e-44 184.5 207 48.3
arahy.Tifrunner.gnm1.ann1.3P0NFT Arachis hypogaea HOM05D006980 ORTHO05D008704 3.0e-44 183.7 174 50.0
QL07p038975 Quercus lobata HOM05D006980 ORTHO05D008704 3.0e-44 183.7 165 52.7
Medtr7g104640 Medicago truncatula HOM05D006980 ORTHO05D008704 5.0e-44 183.0 177 49.7
Cfa016610 Carpinus fangiana HOM05D006980 ORTHO05D008704 3.3e-43 180.3 223 46.6
Aqoxy2G01180 Aquilegia oxysepala HOM05D006980 ORTHO05D008704 2.1e-42 177.6 207 43.5
GSVIVG01029738001 Vitis vinifera HOM05D006980 ORTHO05D008704 2.1e-42 177.6 200 50.5
Manes.09G055100 Manihot esculenta HOM05D006980 ORTHO05D008704 2.8e-42 177.2 178 50.0
Sed0006527 Sechium edule HOM05D006980 ORTHO05D008704 2.8e-42 177.2 212 46.2
TPR.G19555 Trifolium pratense HOM05D006980 ORTHO05D008704 2.8e-42 177.2 201 45.3
CsaV3_6G007180 Cucumis sativus L. HOM05D006980 ORTHO05D008704 6.2e-42 176.0 213 45.1
Ah.02g130100 Amaranthus hybridus HOM05D006980 ORTHO05D008704 1.1e-41 175.3 217 43.3
MELO3C022409.2 Cucumis melo HOM05D006980 ORTHO05D008704 4.0e-41 173.3 212 45.3
Ciclev10011570m.g Citrus clementina HOM05D006980 ORTHO05D008704 6.8e-41 172.6 213 46.0
TWI77G0642 Tripterygium wilfordii HOM05D006980 ORTHO05D008704 8.9e-41 172.2 214 45.8
Atru.chr8.1533 Acer truncatum HOM05D006980 ORTHO05D008704 1.2e-40 171.8 171 50.9
PGR142G3286 Punica granatum HOM05D006980 ORTHO05D008704 1.5e-40 171.4 212 44.3
AUR62005415 Chenopodium quinoa HOM05D006980 ORTHO05D008704 2.0e-40 171.0 220 47.3
Potri.006G068700 Populus trichocarpa HOM05D006980 ORTHO05D008704 4.4e-40 169.9 179 45.8
AUR62014076 Chenopodium quinoa HOM05D006980 ORTHO05D008704 9.8e-40 168.7 218 46.8
COL.COLO4_29731 Corchorus olitorius HOM05D006980 ORTHO05D008704 4.9e-39 166.4 219 46.6
Cpa.g.sc166.4 Carica papaya HOM05D006980 ORTHO05D008704 8.3e-39 165.6 217 44.2
THA.LOC104804920 Tarenaya hassleriana HOM05D006980 ORTHO05D008704 1.1e-38 165.2 195 47.7
GSVIVG01015930001 Vitis vinifera HOM05D006980 ORTHO05D008704 2.4e-38 164.1 190 46.3
Thecc.05G089500 Theobroma cacao HOM05D006980 ORTHO05D008704 4.1e-38 163.3 199 46.2
Sp4g18460 Schrenkiella parvula HOM05D006980 ORTHO05D008704 9.2e-38 162.2 207 44.4
CARHR130480 Cardamine hirsuta HOM05D006980 ORTHO05D008704 1.2e-37 161.8 209 43.5
Eucgr.G00971 Eucalyptus grandis HOM05D006980 ORTHO05D008704 1.6e-37 161.4 210 43.3
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.1e-37 161.0 185 43.8
AL4G32340 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 2.7e-37 160.6 207 43.0
Lalb_Chr20g0111701 Lupinus albus HOM05D006980 ORTHO05D008704 7.8e-37 159.1 179 46.9
BcaC02g11726 Brassica carinata HOM05D006980 ORTHO05D008704 1.0e-36 158.7 215 42.3
BcaC02g11728 Brassica carinata HOM05D006980 ORTHO05D008704 1.0e-36 158.7 215 42.3
Aa31LG5G21360 Aethionema arabicum HOM05D006980 ORTHO05D008704 1.7e-36 157.9 211 44.1
AT2G36240 Arabidopsis thaliana HOM05D006980 ORTHO05D008704 2.3e-36 157.5 207 43.5
BcaB02g09370 Brassica carinata HOM05D006980 ORTHO05D008704 3.0e-36 157.1 219 42.0
ATR0051G062 Amborella trichopoda HOM05D006980 ORTHO05D008704 8.6e-36 155.6 172 41.9
Thhalv10016603m.g Eutrema salsugineum HOM05D006980 ORTHO05D008704 5.6e-35 152.9 190 43.2
ClCG06G001250 Citrullus lanatus HOM05D006980 ORTHO05D008704 7.3e-35 152.5 212 40.6
SHI12421 Sapria himalayana HOM05D006980 ORTHO05D008704 9.5e-35 152.1 190 43.7
Nn6g34894 Nelumbo nucifera HOM05D006980 ORTHO05D008704 2.3e-33 147.5 187 43.3
BcaC02g11732 Brassica carinata HOM05D006980 ORTHO05D008704 6.8e-33 146.0 220 40.5
BolC4t22838H Brassica oleracea HOM05D006980 ORTHO05D008704 6.8e-33 146.0 220 40.5
A05p09600 Brassica napus HOM05D006980 ORTHO05D008704 3.4e-32 143.7 205 42.4
Gorai.009G402600 Gossypium raimondii HOM05D006980 ORTHO05D008704 5.8e-32 142.9 235 39.6
HPP92_011900 Vanilla planifolia HOM05D006980 ORTHO05D008704 5.8e-32 142.9 169 44.4
BraA05t19913Z Brassica rapa HOM05D006980 ORTHO05D008704 9.9e-32 142.1 204 42.2
C04p11900 Brassica napus HOM05D006980 ORTHO05D008704 6.4e-31 139.4 220 38.2
BcaC02g11731 Brassica carinata HOM05D006980 ORTHO05D008704 1.1e-30 138.7 208 40.9
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 1.4e-30 138.3 214 40.2
Duzib106G0372 Durio zibethinus HOM05D006980 ORTHO05D008704 1.9e-30 137.9 219 41.1
Glyma.03G196000 Glycine max HOM05D006980 ORTHO05D008704 7.8e-29 132.5 165 45.5
Phvul.001G190300 Phaseolus vulgaris HOM05D006980 ORTHO05D008704 3.9e-28 130.2 185 39.5
VMungo1383G3509 Vigna mungo HOM05D006980 ORTHO05D008704 3.9e-28 130.2 185 41.1
arahy.Tifrunner.gnm1.ann1.FQN2WV Arachis hypogaea HOM05D006980 ORTHO05D008704 8.6e-28 129.0 104 54.8
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 9.6e-27 125.6 213 40.8
Eucgr.G00972 Eucalyptus grandis HOM05D006980 ORTHO05D008704 5.8e-24 116.3 200 37.0
SEGI_13947 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 1.9e-22 111.3 185 35.1
SEGI_40503 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 1.9e-22 111.3 185 35.1
Ca_09007_v3 Cicer arietinum L. HOM05D006980 ORTHO05D008704 2.7e-21 107.5 107 50.5
FAN02G3599 Fragaria x ananassa HOM05D006980 ORTHO05D008704 3.5e-21 107.1 107 51.4
Haze_19614 Corylus avellana HOM05D006980 ORTHO05D008704 6.6e-20 102.8 107 47.7
Sabra06G0051200 Salix brachista HOM05D006980 ORTHO05D008704 4.3e-19 100.1 107 44.9
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 4.8e-18 96.7 176 36.4
DCAR_013476 Daucus carota HOM05D006980 ORTHO05D008704 4.4e-16 90.1 87 51.7
Psat3g033240 Pisum sativum HOM05D006980 ORTHO05D008704 5.8e-16 89.7 107 43.9
Zm00001eb365120 Zea mays HOM05D006980 ORTHO05D008704 5.1e-12 76.6 200 31.5
SGA_v2.0_scaffold32G13171 Striga asiatica HOM05D006980 ORTHO05D008704 4.0e-09 67.0 185 30.8
Carub.0004s1800 Capsella rubella HOM05D006980 ORTHO05D008704 2.6e-08 64.3 52 55.8
FvH4_6g18780 Fragaria vesca HOM05D006980 ORTHO05D008704 3.4e-08 63.9 43 65.1
FAN14G4048 Fragaria x ananassa HOM05D006980 ORTHO05D008704 3.4e-08 63.9 43 65.1
Manes.07G071796 Manihot esculenta HOM05D006980 ORTHO05D008704 1.3e-07 62.0 42 57.1
FAN05G0477 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.1e-06 58.9 43 60.5
Atru.chr6.1455 Acer truncatum HOM05D007486 ORTHO05D003673 9.3e-06 55.8 150 25.3
Gohir.D07G096200 Gossypium hirsutum HOM05D007486 ORTHO05D003673 9.3e-06 55.8 180 25.0


User provided reference genes

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