Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g27550 Coffea canephora HOM05D003115 ORTHO05D003595 2.7e-71 271.9 140 100.0
Cc00_g09570 Coffea canephora HOM05D003115 ORTHO05D003595 5.0e-70 267.7 140 98.6
Cc00_g09610 Coffea canephora HOM05D003115 ORTHO05D003595 1.3e-65 253.1 140 93.6
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 1.9e-48 196.1 140 67.9
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 1.3e-46 189.9 140 65.7
Lj6C385T7 Lonicera japonica HOM05D003115 ORTHO05D003595 1.7e-46 189.5 140 69.3
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 3.0e-46 188.7 140 66.4
Oeu002918.1 Olea europaea HOM05D003115 ORTHO05D003595 3.3e-45 185.3 142 67.6
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 1.8e-43 179.5 140 67.1
Actinidia35847 Actinidia chinensis HOM05D003115 ORTHO05D003595 4.0e-43 178.3 140 65.7
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 5.8e-42 174.5 140 65.0
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 5.8e-42 174.5 140 65.0
Peaxi162Scf00047g00136 Petunia axillaris HOM05D003115 ORTHO05D003595 5.8e-42 174.5 137 62.0
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 1.7e-41 172.9 138 63.8
Cpa.g.sc83.40 Carica papaya HOM05D003115 ORTHO05D003595 2.9e-41 172.2 140 65.7
Migut.B01882 Erythranthe guttata HOM05D003115 ORTHO05D003595 2.9e-41 172.2 140 62.1
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 1.9e-40 169.5 138 60.9
CAN.G1155.21 Capsicum annuum HOM05D003115 ORTHO05D003595 5.4e-40 167.9 138 60.1
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 5.4e-40 167.9 140 60.7
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 7.1e-40 167.5 135 62.2
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 1.2e-39 166.8 140 58.6
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 3.5e-39 165.2 138 60.9
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 2.3e-38 162.5 137 61.3
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 2.3e-38 162.5 137 60.6
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 3.0e-38 162.2 137 59.9
Cfa010533 Carpinus fangiana HOM05D003115 ORTHO05D003595 3.9e-38 161.8 139 64.0
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 8.7e-38 160.6 140 57.9
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 1.1e-37 160.2 139 63.3
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 2.5e-37 159.1 138 56.5
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 3.3e-37 158.7 140 60.7
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 3.3e-37 158.7 140 59.3
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 9.6e-37 157.1 138 55.8
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 1.6e-36 156.4 140 58.6
Gohir.D10G137700 Gossypium hirsutum HOM05D003115 ORTHO05D003595 2.1e-36 156.0 140 58.6
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 4.8e-36 154.8 140 56.4
MBI17_g03746_MAGBIO Magnolia biondii HOM05D003115 ORTHO05D003595 6.2e-36 154.5 136 58.8
Potri.001G318800 Populus trichocarpa HOM05D003115 ORTHO05D003595 2.4e-35 152.5 143 57.3
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 2.4e-35 152.5 140 56.4
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 3.1e-35 152.1 140 56.4
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 4.0e-35 151.8 140 57.1
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 4.0e-35 151.8 141 58.2
MD17G1201300 Malus domestica HOM05D003115 ORTHO05D003595 4.0e-35 151.8 137 58.4
Rhsim09G0059200 Rhododendron simsii HOM05D003115 ORTHO05D003595 5.3e-35 151.4 140 56.4
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 9.0e-35 150.6 137 58.4
Atru.chr4.1598 Acer truncatum HOM05D003115 ORTHO05D003595 1.5e-34 149.8 140 55.7
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.5e-34 149.8 138 57.2
ECA233G4989 Erigeron canadensis HOM05D003115 ORTHO05D003595 2.0e-34 149.4 140 53.6
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 2.0e-34 149.4 137 58.4
arahy.Tifrunner.gnm1.ann1.01WSAY Arachis hypogaea HOM05D003115 ORTHO05D003595 3.4e-34 148.7 116 62.9
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 3.4e-34 148.7 138 57.2
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 3.4e-34 148.7 138 57.2
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 3.4e-34 148.7 116 62.1
arahy.Tifrunner.gnm1.ann1.QS081X Arachis hypogaea HOM05D003115 ORTHO05D003595 5.8e-34 147.9 116 62.1
CDE07G0216 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 5.8e-34 147.9 137 57.7
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 7.6e-34 147.5 138 56.5
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 7.6e-34 147.5 138 56.5
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 1.3e-33 146.7 116 61.2
Sabra16G0201800 Salix brachista HOM05D003115 ORTHO05D003595 1.3e-33 146.7 143 55.2
PSO210G2420 Papaver somniferum HOM05D003115 ORTHO05D003595 8.4e-33 144.1 136 55.9
EL10Ac3g07463 Beta vulgaris HOM05D003115 ORTHO05D003595 3.2e-32 142.1 114 59.6
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 4.2e-32 141.7 140 52.1
AUR62018566 Chenopodium quinoa HOM05D003115 ORTHO05D003595 7.1e-32 141.0 130 56.9
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 9.3e-32 140.6 140 53.6
Medtr3g083970 Medicago truncatula HOM05D003115 ORTHO05D003595 1.2e-31 140.2 137 53.3
ATR0665G483 Amborella trichopoda HOM05D003115 ORTHO05D003595 1.6e-31 139.8 137 51.8
Hund29080 Selenicereus undatus HOM05D003115 ORTHO05D003595 1.6e-31 139.8 140 49.3
Hund29082 Selenicereus undatus HOM05D003115 ORTHO05D003595 1.6e-31 139.8 140 49.3
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 2.1e-31 139.4 138 54.3
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 3.5e-31 138.7 138 54.3
PGSC0003DMG400007741 Solanum tuberosum HOM05D003115 ORTHO05D003595 4.6e-31 138.3 128 54.7
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 7.9e-31 137.5 140 50.7
PSO832G1670 Papaver somniferum HOM05D003115 ORTHO05D003595 1.0e-30 137.1 136 54.4
Psat0s3058g0040 Pisum sativum HOM05D003115 ORTHO05D003595 1.3e-30 136.7 109 60.6
AL1G38530 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 1.8e-30 136.3 140 52.9
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 1.8e-30 136.3 138 53.6
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 3.0e-30 135.6 140 50.0
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 3.0e-30 135.6 188 44.7
HPP92_007262 Vanilla planifolia HOM05D003115 ORTHO05D003595 3.0e-30 135.6 136 51.5
AUR62020852 Chenopodium quinoa HOM05D003115 ORTHO05D003595 3.9e-30 135.2 121 57.0
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 6.7e-30 134.4 140 50.7
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 6.7e-30 134.4 138 50.7
A03p60500 Brassica napus HOM05D003115 ORTHO05D003595 1.1e-29 133.7 140 50.0
Zm00001eb121880 Zea mays HOM05D003115 ORTHO05D003595 1.1e-29 133.7 140 52.1
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 1.5e-29 133.3 138 51.4
Ah.04g149340 Amaranthus hybridus HOM05D003115 ORTHO05D003595 1.9e-29 132.9 130 53.8
CARHR238880 Cardamine hirsuta HOM05D003115 ORTHO05D003595 1.9e-29 132.9 138 50.7
Lalb_Chr23g0269101 Lupinus albus HOM05D003115 ORTHO05D003595 4.3e-29 131.7 140 50.0
Carub.0001s2398 Capsella rubella HOM05D003115 ORTHO05D003595 5.6e-29 131.3 140 50.7
Carub.0005s0720 Capsella rubella HOM05D003115 ORTHO05D003595 7.4e-29 131.0 128 53.9
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 7.4e-29 131.0 138 48.6
unitig_578.g16273 Utricularia gibba HOM05D003115 ORTHO05D003595 1.3e-28 130.2 140 48.6
Oeu043446.1 Olea europaea HOM05D003115 ORTHO05D003595 1.6e-28 129.8 122 57.4
Thhalv10009353m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 4.8e-28 128.3 108 57.4
TPR.G14704 Trifolium pratense HOM05D003115 ORTHO05D003595 1.1e-27 127.1 105 59.0
A09p40420 Brassica napus HOM05D003115 ORTHO05D003595 4.0e-27 125.2 140 46.4
BraA09t39538Z Brassica rapa HOM05D003115 ORTHO05D003595 5.3e-27 124.8 108 56.5
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 5.3e-27 124.8 128 51.6
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 1.5e-26 123.2 137 48.2
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 4.5e-26 121.7 140 48.6
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 7.6e-26 120.9 101 59.4
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 4.9e-25 118.2 138 46.4
Rhsim02G0023500 Rhododendron simsii HOM05D003115 ORTHO05D003595 2.4e-24 115.9 90 66.7
BcaC05g26355 Brassica carinata HOM05D003115 ORTHO05D003595 9.3e-24 114.0 138 46.4
C05p23800 Brassica napus HOM05D003115 ORTHO05D003595 5.1e-22 108.2 139 42.4
SEGI_02895 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 3.1e-19 99.0 106 47.2
SEGI_04472 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 3.1e-19 99.0 106 47.2
PGSC0003DMG400007742 Solanum tuberosum HOM05D000005 ORTHO05D003595 5.3e-19 98.2 82 62.2
BcaNung02730 Brassica carinata HOM05D003115 ORTHO05D003595 2.6e-18 95.9 140 39.3
BolC7t46291H Brassica oleracea HOM05D003115 ORTHO05D003595 2.6e-18 95.9 140 39.3
C07p58370 Brassica napus HOM05D003115 ORTHO05D003595 3.4e-18 95.5 140 40.0
CARHR024920 Cardamine hirsuta HOM05D003115 ORTHO05D003595 4.5e-18 95.1 141 41.8
BcaNung01550 Brassica carinata HOM05D003115 ORTHO05D003595 7.6e-18 94.4 140 38.6
Mapoly0054s0075 Marchantia polymorpha HOM05D003115 ORTHO05D003595 3.8e-17 92.0 103 44.7
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 7.1e-16 87.8 72 58.3
Pp3c3_18970 Physcomitrium patens HOM05D003115 ORTHO05D003595 1.2e-15 87.0 106 43.4
Hund16694 Selenicereus undatus HOM05D003115 ORTHO05D003595 4.6e-15 85.1 138 37.0
AagrBONN_evm.TU.Sc2ySwM_228.2833 Anthoceros agrestis HOM05D003115 ORTHO05D003595 5.1e-14 81.6 106 43.4
AUR62038226 Chenopodium quinoa HOM05D010117 ORTHO05D012431 2.5e-13 79.3 63 60.3
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 2.0e-10 69.7 97 40.2
Os01g0584800 Oryza sativa ssp. japonica HOM05D003115 ORTHO05D003595 1.3e-09 67.0 48 70.8
COL.COLO4_08386 Corchorus olitorius HOM05D003115 ORTHO05D003595 4.2e-08 62.0 39 79.5
HPP92_007257 Vanilla planifolia HOM05D003115 ORTHO05D003595 2.1e-07 59.7 69 47.8
PGSC0003DMG400026434 Solanum tuberosum HOM05D003115 ORTHO05D003595 1.3e-06 57.0 54 44.4
CBR_g75372 Chara braunii HOM05D003115 ORTHO05D003595 3.0e-06 55.8 74 37.8
CANSAT78G1701 Cannabis sativa HOM05D003115 ORTHO05D003595 3.9e-06 55.5 37 64.9
SMO164G0231 Selaginella moellendorffii HOM05D003115 ORTHO05D003595 6.7e-06 54.7 96 33.3


User provided reference genes

Program Settings