Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g27460 Coffea canephora HOM05D003693 ORTHO05D004698 7.0e-240 833.6 425 100.0
Cc02_g28770 Coffea canephora HOM05D003693 ORTHO05D004698 5.8e-210 734.2 420 91.9
Cc00_g28470 Coffea canephora HOM05D003693 ORTHO05D004698 2.4e-192 675.6 413 88.1
Nitab4.5_0001244g0140 Nicotiana tabacum HOM05D003693 ORTHO05D004698 8.1e-188 660.6 420 82.9
Nitab4.5_0005367g0010 Nicotiana tabacum HOM05D003693 ORTHO05D004698 1.1e-187 660.2 420 82.6
MSTRG.17008 Avicennia marina HOM05D003693 ORTHO05D004698 6.9e-187 657.5 420 82.1
Peaxi162Scf00694g00440 Petunia axillaris HOM05D003693 ORTHO05D004698 9.0e-187 657.1 418 82.8
SGA_v2.0_scaffold119G32763 Striga asiatica HOM05D003693 ORTHO05D004698 1.3e-185 653.3 420 81.4
Migut.B01266 Erythranthe guttata HOM05D003693 ORTHO05D004698 2.2e-185 652.5 420 81.4
Thecc.05G189800 Theobroma cacao HOM05D003693 ORTHO05D004698 3.8e-185 651.7 420 81.2
MSTRG.20559 Avicennia marina HOM05D003693 ORTHO05D004698 4.9e-185 651.4 420 80.7
Hma1.2p1_0685F.1_g203180 Hydrangea macrophylla HOM05D003693 ORTHO05D004698 4.9e-185 651.4 420 80.7
Oeu014595.1 Olea europaea HOM05D003693 ORTHO05D004698 6.4e-185 651.0 420 81.9
CAN.G1619.1 Capsicum annuum HOM05D003693 ORTHO05D004698 1.1e-184 650.2 420 82.1
COL.COLO4_12338 Corchorus olitorius HOM05D003693 ORTHO05D004698 1.9e-184 649.4 420 80.5
PGSC0003DMG400006778 Solanum tuberosum HOM05D003693 ORTHO05D004698 4.6e-183 644.8 420 82.1
Dinv43405 Davidia involucrata HOM05D003693 ORTHO05D004698 7.8e-183 644.0 420 80.0
SalBow6G5509 Salvia bowleyana HOM05D003693 ORTHO05D004698 7.8e-183 644.0 420 79.5
CSS0039233 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 1.3e-182 643.3 420 80.2
CiPaw.16G119500 Carya illinoinensis HOM05D003693 ORTHO05D004698 2.3e-182 642.5 420 80.0
Solyc01g087870.4 Solanum lycopersicum HOM05D003693 ORTHO05D004698 2.3e-182 642.5 420 81.9
Sopen01g034800 Solanum pennellii HOM05D003693 ORTHO05D004698 2.3e-182 642.5 420 81.9
Rhsim07G0058800 Rhododendron simsii HOM05D003693 ORTHO05D004698 3.0e-182 642.1 425 79.8
TAR563G0002 Trochodendron aralioides HOM05D003693 ORTHO05D004698 3.0e-182 642.1 420 80.0
Duzib128G1866 Durio zibethinus HOM05D003693 ORTHO05D004698 3.9e-182 641.7 420 79.5
Gorai.012G026300 Gossypium raimondii HOM05D003693 ORTHO05D004698 3.9e-182 641.7 421 80.0
SalBow6G6742 Salvia bowleyana HOM05D003693 ORTHO05D004698 3.9e-182 641.7 420 79.3
Manes.12G004200 Manihot esculenta HOM05D003693 ORTHO05D004698 6.6e-182 641.0 420 80.2
Thecc.01G406700 Theobroma cacao HOM05D003693 ORTHO05D004698 8.7e-182 640.6 420 80.0
vmacro13696 Vaccinium macrocarpon HOM05D003693 ORTHO05D004698 1.1e-181 640.2 419 79.7
Ciclev10011203m.g Citrus clementina HOM05D003693 ORTHO05D004698 1.5e-181 639.8 420 80.5
Peaxi162Scf00071g01043 Petunia axillaris HOM05D003693 ORTHO05D004698 1.9e-181 639.4 420 81.0
unitig_0.g1393 Utricularia gibba HOM05D003693 ORTHO05D004698 1.9e-181 639.4 420 80.5
Atru.chr12.1748 Acer truncatum HOM05D003693 ORTHO05D004698 3.3e-181 638.6 420 79.5
Sabra19G0063500 Salix brachista HOM05D003693 ORTHO05D004698 4.3e-181 638.3 420 80.2
CANSAT21G0769 Cannabis sativa HOM05D003693 ORTHO05D004698 5.6e-181 637.9 420 79.8
Gohir.D04G022000 Gossypium hirsutum HOM05D003693 ORTHO05D004698 5.6e-181 637.9 421 79.8
Potri.019G054500 Populus trichocarpa HOM05D003693 ORTHO05D004698 5.6e-181 637.9 420 80.0
AT3G24090 Arabidopsis thaliana HOM05D003693 ORTHO05D004698 1.3e-180 636.7 420 81.0
CARHR100130 Cardamine hirsuta HOM05D003693 ORTHO05D004698 1.3e-180 636.7 420 81.0
Eucgr.H01402 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.6e-180 636.3 420 79.8
Cfa020929 Carpinus fangiana HOM05D003693 ORTHO05D004698 6.2e-180 634.4 420 80.0
GSVIVG01032211001 Vitis vinifera HOM05D003693 ORTHO05D004698 6.2e-180 634.4 420 79.8
Sp3g21850 Schrenkiella parvula HOM05D003693 ORTHO05D004698 1.1e-179 633.6 420 80.7
Duzib133G0510 Durio zibethinus HOM05D003693 ORTHO05D004698 1.8e-179 632.9 420 79.3
Thhalv10002424m.g Eutrema salsugineum HOM05D003693 ORTHO05D004698 1.8e-179 632.9 420 80.5
QL10p037598 Quercus lobata HOM05D003693 ORTHO05D004698 2.4e-179 632.5 419 80.0
Gohir.A05G393100 Gossypium hirsutum HOM05D003693 ORTHO05D004698 6.9e-179 630.9 421 78.9
Aa31LG8G10790 Aethionema arabicum HOM05D003693 ORTHO05D004698 9.0e-179 630.6 420 79.3
AUR62023098 Chenopodium quinoa HOM05D003693 ORTHO05D004698 1.2e-178 630.2 420 78.1
ClCG11G009710 Citrullus lanatus HOM05D003693 ORTHO05D004698 1.5e-178 629.8 420 79.0
Gohir.D12G103600 Gossypium hirsutum HOM05D003693 ORTHO05D004698 2.0e-178 629.4 422 78.7
AUR62009420 Chenopodium quinoa HOM05D003693 ORTHO05D004698 2.6e-178 629.0 420 77.9
MD04G1246300 Malus domestica HOM05D003693 ORTHO05D004698 3.4e-178 628.6 420 79.5
Prupe.6G362600 Prunus persica HOM05D003693 ORTHO05D004698 3.4e-178 628.6 420 79.3
PSO384G0563 Papaver somniferum HOM05D003693 ORTHO05D004698 5.8e-178 627.9 420 78.6
Gohir.A12G100800 Gossypium hirsutum HOM05D003693 ORTHO05D004698 1.3e-177 626.7 422 78.4
Duzib268G0828 Durio zibethinus HOM05D003693 ORTHO05D004698 1.7e-177 626.3 420 78.6
AL3G39260 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 2.2e-177 625.9 420 80.2
EL10Ac2g04376 Beta vulgaris HOM05D003693 ORTHO05D004698 2.9e-177 625.5 420 77.6
Carub.0003s2444 Capsella rubella HOM05D003693 ORTHO05D004698 3.8e-177 625.2 420 79.8
Lalb_Chr03g0038731 Lupinus albus HOM05D003693 ORTHO05D004698 6.4e-177 624.4 420 78.8
MD12G1263800 Malus domestica HOM05D003693 ORTHO05D004698 6.4e-177 624.4 420 79.0
PSO339G5758 Papaver somniferum HOM05D003693 ORTHO05D004698 8.4e-177 624.0 420 77.9
BcaC06g35626 Brassica carinata HOM05D003693 ORTHO05D004698 1.4e-176 623.2 420 79.5
BraA07t28609Z Brassica rapa HOM05D003693 ORTHO05D004698 1.4e-176 623.2 420 79.5
TWI18G0649 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 1.4e-176 623.2 420 78.3
BcaB06g26591 Brassica carinata HOM05D003693 ORTHO05D004698 2.4e-176 622.5 420 79.5
MELO3C008557.2 Cucumis melo HOM05D003693 ORTHO05D004698 2.4e-176 622.5 420 79.0
BcaC01g03357 Brassica carinata HOM05D003693 ORTHO05D004698 4.2e-176 621.7 421 79.6
A07p08260 Brassica napus HOM05D003693 ORTHO05D004698 4.2e-176 621.7 420 79.3
BolC3t17596H Brassica oleracea HOM05D003693 ORTHO05D004698 4.2e-176 621.7 421 79.6
CsaV3_2G010560 Cucumis sativus L. HOM05D003693 ORTHO05D004698 4.2e-176 621.7 420 78.3
FAN02G0024 Fragaria x ananassa HOM05D003693 ORTHO05D004698 5.4e-176 621.3 422 78.7
BcaB03g14607 Brassica carinata HOM05D003693 ORTHO05D004698 7.1e-176 620.9 421 79.6
THA.LOC104821617 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 7.1e-176 620.9 421 78.9
A03p43420 Brassica napus HOM05D003693 ORTHO05D004698 1.6e-175 619.8 421 79.3
BraA03t13480Z Brassica rapa HOM05D003693 ORTHO05D004698 1.6e-175 619.8 421 79.3
Ca_07998_v3 Cicer arietinum L. HOM05D003693 ORTHO05D004698 1.6e-175 619.8 420 78.3
Lalb_Chr01g0020541 Lupinus albus HOM05D003693 ORTHO05D004698 1.6e-175 619.8 420 78.3
TWI36G1545 Tripterygium wilfordii HOM05D003693 ORTHO05D004698 1.6e-175 619.8 420 77.9
Medtr7g080270 Medicago truncatula HOM05D003693 ORTHO05D004698 2.1e-175 619.4 420 78.1
DCAR_029706 Daucus carota HOM05D003693 ORTHO05D004698 2.7e-175 619.0 421 77.2
C07p12800 Brassica napus HOM05D003693 ORTHO05D004698 3.5e-175 618.6 421 79.3
FAN05G2538 Fragaria x ananassa HOM05D003693 ORTHO05D004698 3.5e-175 618.6 422 78.4
THA.LOC104808730 Tarenaya hassleriana HOM05D003693 ORTHO05D004698 3.5e-175 618.6 420 78.3
Haze_19361 Corylus avellana HOM05D003693 ORTHO05D004698 4.6e-175 618.2 438 76.5
Sc10g0000370 Simmondsia chinensis HOM05D003693 ORTHO05D004698 4.6e-175 618.2 420 77.6
FvH4_6g00360 Fragaria vesca HOM05D003693 ORTHO05D004698 6.0e-175 617.8 422 78.4
FAN09G1864 Fragaria x ananassa HOM05D003693 ORTHO05D004698 6.0e-175 617.8 422 78.4
FAN14G5956 Fragaria x ananassa HOM05D003693 ORTHO05D004698 6.0e-175 617.8 422 78.2
ATR1096G033 Amborella trichopoda HOM05D003693 ORTHO05D004698 7.9e-175 617.5 420 77.4
C03p53370 Brassica napus HOM05D003693 ORTHO05D004698 7.9e-175 617.5 421 79.1
Sed0016989 Sechium edule HOM05D003693 ORTHO05D004698 7.9e-175 617.5 420 77.9
TPR.G33878 Trifolium pratense HOM05D003693 ORTHO05D004698 1.0e-174 617.1 420 77.9
BolC7t41766H Brassica oleracea HOM05D003693 ORTHO05D004698 1.3e-174 616.7 421 79.3
PGR119G0062 Punica granatum HOM05D003693 ORTHO05D004698 2.3e-174 615.9 420 76.4
Lj1g0027377 Lotus japonicus HOM05D003693 ORTHO05D004698 6.7e-174 614.4 420 78.1
Glyma.09G249100 Glycine max HOM05D003693 ORTHO05D004698 1.1e-173 613.6 420 77.9
PGR031G3615 Punica granatum HOM05D003693 ORTHO05D004698 1.5e-173 613.2 420 76.2
Glyma.18G243300 Glycine max HOM05D003693 ORTHO05D004698 2.5e-173 612.5 420 78.1
Phvul.008G053200 Phaseolus vulgaris HOM05D003693 ORTHO05D004698 3.3e-173 612.1 420 78.3
Psat3g102600 Pisum sativum HOM05D003693 ORTHO05D004698 5.6e-173 611.3 420 77.4
ECA248G0053 Erigeron canadensis HOM05D003693 ORTHO05D004698 9.6e-173 610.5 420 76.4
Gorai.008G112800 Gossypium raimondii HOM05D003693 ORTHO05D004698 1.3e-172 610.1 460 72.2
SHI13710 Sapria himalayana HOM05D003693 ORTHO05D004698 1.6e-172 609.8 418 77.3
RcHm_v2.0_Chr3g0447661 Rosa chinensis HOM05D003693 ORTHO05D004698 2.1e-172 609.4 422 77.3
Aqoxy5G04181 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 2.8e-172 609.0 420 77.1
TPR.G34077 Trifolium pratense HOM05D003693 ORTHO05D004698 4.8e-172 608.2 420 76.7
CDE04G2718 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 1.1e-171 607.1 420 76.0
Lsat_1_v5_gn_1_104980 Lactuca sativa HOM05D003693 ORTHO05D004698 2.4e-171 605.9 420 76.4
TAR369G0556 Trochodendron aralioides HOM05D003693 ORTHO05D004698 3.1e-171 605.5 420 76.4
HanXRQChr06g0179741 Helianthus annuus HOM05D003693 ORTHO05D004698 1.7e-169 599.7 420 75.0
MBI19_g25011_MAGBIO Magnolia biondii HOM05D003693 ORTHO05D004698 2.9e-169 599.0 420 75.5
Actinidia08353 Actinidia chinensis HOM05D003693 ORTHO05D004698 6.4e-169 597.8 392 80.1
VMungo1383G0289 Vigna mungo HOM05D003693 ORTHO05D004698 1.9e-168 596.3 413 77.0
Nitab4.5_0001676g0080 Nicotiana tabacum HOM05D003693 ORTHO05D004698 2.4e-168 595.9 420 77.1
SEGI_39911 Sequoiadendron giganteum HOM05D003693 ORTHO05D004698 7.1e-168 594.3 420 74.8
arahy.Tifrunner.gnm1.ann1.55VZFW Arachis hypogaea HOM05D003693 ORTHO05D004698 1.2e-167 593.6 420 75.7
Ah.10g038580 Amaranthus hybridus HOM05D003693 ORTHO05D004698 2.1e-167 592.8 420 76.0
SMO301G0028 Selaginella moellendorffii HOM05D003693 ORTHO05D004698 2.7e-167 592.4 442 71.9
arahy.Tifrunner.gnm1.ann1.RCZ69X Arachis hypogaea HOM05D003693 ORTHO05D004698 6.0e-167 591.3 420 75.5
Lj8C726G3 Lonicera japonica HOM05D003693 ORTHO05D004698 6.2e-164 581.3 392 77.3
Eucgr.H01630 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.8e-163 579.7 386 79.3
Nn2g12199 Nelumbo nucifera HOM05D003693 ORTHO05D004698 2.6e-162 575.9 389 77.4
Mapoly0131s0027 Marchantia polymorpha HOM05D003693 ORTHO05D004698 1.3e-161 573.5 420 73.1
HPP92_019436 Vanilla planifolia HOM05D003693 ORTHO05D004698 1.0e-158 563.9 418 72.7
AL8G20490 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 1.5e-157 560.1 420 73.6
Pp3c1_10100 Physcomitrium patens HOM05D003693 ORTHO05D004698 5.7e-157 558.1 421 71.0
Pp3c2_32740 Physcomitrium patens HOM05D003693 ORTHO05D004698 2.2e-156 556.2 421 71.0
Zm00001eb163520 Zea mays HOM05D003693 ORTHO05D004698 1.1e-155 553.9 419 72.1
Cpa.g.sc39.19 Carica papaya HOM05D003693 ORTHO05D004698 5.5e-152 541.6 352 81.5
SalBow5G4957 Salvia bowleyana HOM05D003693 ORTHO05D004698 3.3e-149 532.3 336 82.7
CDE07G0727 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 2.7e-135 486.1 348 74.4
CSS0022704 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 3.6e-135 485.7 370 72.2
CSS0008601 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 8.8e-134 481.1 370 71.4
Eucgr.H01633 Eucalyptus grandis HOM05D003693 ORTHO05D004698 4.8e-132 475.3 393 67.4
Os12g0131100 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D004698 2.4e-131 473.0 327 76.5
CSS0029083 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 1.9e-128 463.4 375 69.3
AagrBONN_evm.TU.Sc2ySwM_344.1788 Anthoceros agrestis HOM05D003693 ORTHO05D004698 1.2e-122 444.1 314 75.2
MCO09G229 Micromonas commoda HOM05D003693 ORTHO05D004698 1.6e-122 443.7 429 57.3
AL8G20570 Arabidopsis lyrata HOM05D003693 ORTHO05D004698 1.7e-121 440.3 293 80.9
Manes.13G004500 Manihot esculenta HOM05D003693 ORTHO05D004698 1.7e-121 440.3 419 62.5
CDE08G0281 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 8.6e-113 411.4 292 73.6
Cre08.g375500 Chlamydomonas reinhardtii HOM05D003693 ORTHO05D004698 4.4e-109 399.1 406 55.4
PRCOL_00001226 Prasinoderma coloniale HOM05D003693 ORTHO05D004698 4.5e-106 389.0 447 50.6
Eucgr.H01634 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.5e-96 357.5 417 53.7
Dinv09309 Davidia involucrata HOM05D003693 ORTHO05D004698 4.4e-93 345.9 208 83.7
Lj9A641G59 Lonicera japonica HOM05D003693 ORTHO05D004698 2.1e-87 327.0 216 80.1
Eucgr.H01405 Eucalyptus grandis HOM05D003693 ORTHO05D004698 3.6e-87 326.2 422 51.7
Eucgr.H01403 Eucalyptus grandis HOM05D003693 ORTHO05D004698 1.2e-85 321.2 249 71.5
CSS0010682 Camellia sinensis var. sinensis HOM05D003693 ORTHO05D004698 1.9e-83 313.9 222 73.9
Aqoxy2G01319 Aquilegia oxysepala HOM05D003693 ORTHO05D031300 2.3e-81 307.0 206 77.2
Cc00_g31680 Coffea canephora HOM05D003693 ORTHO05D004698 7.1e-75 285.4 201 79.1
Aqoxy1G02791 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 8.7e-73 278.5 222 69.8
Lsat_1_v5_gn_3_45201 Lactuca sativa HOM05D003693 ORTHO05D004698 1.3e-63 248.1 242 57.9
Actinidia19423 Actinidia chinensis HOM05D003693 ORTHO05D004698 4.6e-58 229.6 238 58.0
Haze_26883 Corylus avellana HOM05D003693 ORTHO05D004698 1.5e-53 214.5 251 47.0
Aqoxy1G02790 Aquilegia oxysepala HOM05D003693 ORTHO05D004698 2.2e-52 210.7 150 74.0
HPP92_019410 Vanilla planifolia HOM05D003693 ORTHO05D004698 1.0e-41 175.3 163 60.1
Sed0025004 Sechium edule HOM05D003693 ORTHO05D004698 5.5e-35 152.9 120 68.3
CDE08G0573 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 2.4e-30 137.5 110 64.5
Dinv23140 Davidia involucrata HOM05D004830 ORTHO05D005310 7.2e-27 125.9 74 82.4
Lj9A641G58 Lonicera japonica HOM05D003693 ORTHO05D004698 1.6e-26 124.8 160 50.0
Lsat_1_v5_gn_1_126760 Lactuca sativa HOM05D002996 ORTHO05D004698 1.8e-22 111.3 70 80.0
CDE02G0831 Ceratophyllum demersum HOM05D003693 ORTHO05D004698 2.0e-21 107.8 70 78.6
Migut.C00049 Erythranthe guttata HOM05D003693 ORTHO05D004698 2.5e-19 100.9 66 77.3
Zm00001eb405240 Zea mays HOM05D003693 ORTHO05D004698 3.2e-19 100.5 90 62.2
Lsat_1_v5_gn_2_39580 Lactuca sativa HOM05D003693 ORTHO05D004698 4.7e-10 70.1 38 84.2
Os11g0133700 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D031300 6.3e-07 59.7 51 60.8
Os12g0131150 Oryza sativa ssp. japonica HOM05D003693 ORTHO05D031300 6.3e-07 59.7 51 60.8
Lsat_1_v5_gn_3_99160 Lactuca sativa HOM05D003693 ORTHO05D231443 8.3e-07 59.3 61 47.5


User provided reference genes

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