Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 1.9e-192 675.6 338 100.0
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 1.6e-175 619.4 325 95.7
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 1.6e-138 496.5 324 74.4
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 6.8e-137 491.1 324 73.5
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 3.7e-135 485.3 324 73.5
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 1.8e-134 483.0 324 73.5
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 8.5e-132 474.2 323 72.1
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 3.2e-131 472.2 323 70.6
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 1.2e-130 470.3 324 71.3
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 6.1e-130 468.0 318 72.0
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 2.3e-129 466.1 324 70.7
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 1.3e-127 460.3 324 69.8
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.4e-126 456.8 318 70.4
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 5.4e-126 454.9 326 68.7
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 9.2e-126 454.1 339 66.1
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 1.2e-125 453.8 324 69.4
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 1.6e-125 453.4 324 67.0
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 7.7e-125 451.1 324 70.1
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 1.3e-124 450.3 324 70.1
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 1.7e-124 449.9 324 68.8
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 1.5e-123 446.8 323 66.6
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.9e-123 446.4 324 68.2
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 3.3e-123 445.7 324 68.2
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 5.6e-123 444.9 324 68.5
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 5.6e-123 444.9 322 68.9
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 7.3e-123 444.5 324 66.0
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 1.6e-122 443.4 324 68.2
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 1.6e-122 443.4 324 67.9
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 3.6e-122 442.2 358 62.3
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 3.6e-122 442.2 296 73.3
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.4e-121 440.3 324 67.9
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 6.8e-121 438.0 323 65.9
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 3.4e-120 435.6 323 66.9
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 1.3e-119 433.7 323 65.9
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 1.7e-119 433.3 326 65.6
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 8.3e-119 431.0 323 65.3
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 8.3e-119 431.0 323 65.9
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 8.3e-119 431.0 323 65.3
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 1.1e-118 430.6 323 65.9
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 1.1e-118 430.6 318 64.2
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 1.4e-118 430.3 323 65.9
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 1.8e-118 429.9 323 63.8
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 1.8e-118 429.9 324 65.7
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 2.4e-118 429.5 323 65.6
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 2.4e-118 429.5 323 65.6
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 3.2e-118 429.1 323 65.6
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 3.2e-118 429.1 322 67.7
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 3.2e-118 429.1 356 60.4
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 4.1e-118 428.7 326 65.0
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 5.4e-118 428.3 324 65.1
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 7.0e-118 427.9 323 65.3
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 1.2e-117 427.2 323 65.3
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 1.2e-117 427.2 326 64.7
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 1.2e-117 427.2 356 60.7
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 4.6e-117 425.2 323 64.7
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 1.0e-116 424.1 323 65.9
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 1.3e-116 423.7 323 64.4
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 1.7e-116 423.3 324 63.6
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 2.3e-116 422.9 323 65.0
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 5.0e-116 421.8 323 64.7
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 8.6e-116 421.0 323 63.5
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 8.6e-116 421.0 342 60.8
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 1.5e-115 420.2 323 63.8
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 2.5e-115 419.5 328 62.5
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 3.3e-115 419.1 324 63.0
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 7.3e-115 417.9 323 63.8
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 1.6e-114 416.8 370 59.2
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 2.1e-114 416.4 310 67.4
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 6.2e-114 414.8 324 62.3
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 1.0e-113 414.1 324 62.0
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 1.8e-113 413.3 323 63.8
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.8e-113 413.3 323 63.5
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 3.1e-113 412.5 325 62.2
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 4.0e-113 412.1 378 57.9
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 6.8e-113 411.4 324 62.0
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 4.4e-112 408.7 325 61.8
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.7e-111 406.8 338 62.7
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 4.9e-111 405.2 325 62.2
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 6.4e-111 404.8 292 67.1
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.4e-110 403.7 338 62.1
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 5.6e-107 391.7 323 62.2
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 5.6e-107 391.7 326 61.3
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 4.0e-105 385.6 346 59.0
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 5.2e-105 385.2 292 67.1
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 5.2e-105 385.2 322 60.6
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 8.9e-105 384.4 326 60.4
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 3.4e-104 382.5 322 58.7
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 9.8e-104 380.9 319 60.8
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 1.7e-103 380.2 320 60.3
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 8.3e-103 377.9 323 61.3
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 7.1e-102 374.8 324 59.3
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 2.7e-101 372.9 324 59.9
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 8.6e-100 367.9 255 72.9
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 2.1e-98 363.2 250 68.8
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 1.1e-97 360.9 323 56.3
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 4.0e-97 359.0 292 62.7
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 1.2e-93 347.4 276 64.1
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 6.6e-92 341.7 244 71.3
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 7.3e-91 338.2 230 70.4
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 3.1e-89 332.8 263 63.9
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 4.6e-85 318.9 323 53.9
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 4.6e-85 318.9 325 51.7
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 4.8e-82 308.9 328 50.3
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 7.6e-80 301.6 320 51.6
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 1.9e-75 287.0 185 72.4
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 2.5e-75 286.6 187 71.7
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 3.1e-73 279.6 221 63.3
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 4.9e-71 272.3 213 62.0
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 2.3e-68 263.5 329 42.6
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 5.1e-68 262.3 325 45.5
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 1.6e-66 257.3 340 42.9
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 1.8e-65 253.8 331 43.5
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 1.5e-64 250.8 159 73.6
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 1.4e-62 244.2 324 46.0
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 4.1e-49 199.5 168 60.1
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 1.4e-46 191.0 166 59.0
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 9.4e-46 188.3 152 59.2
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 1.2e-45 188.0 116 74.1
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 4.8e-42 176.0 319 37.3
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 5.5e-38 162.5 347 33.7
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 1.6e-37 161.0 200 52.0
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 3.0e-36 156.8 166 47.6
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 2.6e-35 153.7 153 52.3
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 5.3e-33 146.0 312 34.3
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.6e-29 134.4 143 53.8
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 3.3e-27 126.7 120 55.8
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 6.3e-26 122.5 353 30.0
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 6.8e-20 102.4 244 30.3
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 2.2e-18 97.4 75 62.7
Oeu056063.2 Olea europaea HOM05D007234 ORTHO05D008488 1.7e-15 87.8 65 72.3
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 2.3e-15 87.4 57 71.9
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 3.6e-13 80.1 59 55.9
Cfa001138 Carpinus fangiana HOM05D000398 ORTHO05D000551 9.8e-11 72.0 65 58.5
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 8.3e-10 68.9 48 58.3
Migut.O00469 Erythranthe guttata HOM05D000398 ORTHO05D000551 8.6e-07 58.9 59 55.9
SHI32710 Sapria himalayana HOM05D005903 ORTHO05D007293 1.5e-06 58.2 84 44.0


User provided reference genes

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