Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g27150 Coffea canephora HOM05D003793 ORTHO05D004471 3.9e-96 354.8 175 100.0
Lj3A883G46 Lonicera japonica HOM05D003793 ORTHO05D004471 5.6e-34 148.3 124 58.9
HanXRQChr08g0217471 Helianthus annuus HOM05D003793 ORTHO05D004471 2.3e-32 142.9 132 55.3
Gorai.013G184400 Gossypium raimondii HOM05D003793 ORTHO05D004471 4.0e-32 142.1 122 54.9
Cfa016078 Carpinus fangiana HOM05D003793 ORTHO05D004471 5.2e-32 141.7 128 55.5
Nitab4.5_0000411g0010 Nicotiana tabacum HOM05D003793 ORTHO05D004471 5.2e-32 141.7 118 59.3
Gohir.D13G162300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 8.9e-32 141.0 122 54.9
Thecc.05G223100 Theobroma cacao HOM05D003793 ORTHO05D004471 1.2e-31 140.6 108 61.1
Ciclev10005360m.g Citrus clementina HOM05D003793 ORTHO05D004471 1.5e-31 140.2 127 52.8
Ciclev10032026m.g Citrus clementina HOM05D003793 ORTHO05D004471 1.5e-31 140.2 127 52.8
TWI60G0578 Tripterygium wilfordii HOM05D003793 ORTHO05D004471 1.5e-31 140.2 125 55.2
HanXRQChr08g0217461 Helianthus annuus HOM05D003793 ORTHO05D004471 3.4e-31 139.0 132 54.5
HanXRQChr08g0217581 Helianthus annuus HOM05D003793 ORTHO05D004471 3.4e-31 139.0 117 59.8
ECA233G1952 Erigeron canadensis HOM05D003793 ORTHO05D004471 4.4e-31 138.7 120 55.8
Lsat_1_v5_gn_8_24121 Lactuca sativa HOM05D003793 ORTHO05D004471 7.5e-31 137.9 120 55.8
Nitab4.5_0006250g0010 Nicotiana tabacum HOM05D003793 ORTHO05D004471 7.5e-31 137.9 114 60.5
Oeu027984.2 Olea europaea HOM05D003793 ORTHO05D004471 9.8e-31 137.5 161 48.4
Sabra13G0066000 Salix brachista HOM05D003793 ORTHO05D004471 9.8e-31 137.5 121 55.4
CAN.G726.8 Capsicum annuum HOM05D003793 ORTHO05D004471 1.3e-30 137.1 118 56.8
Haze_00367 Corylus avellana HOM05D003793 ORTHO05D004471 1.3e-30 137.1 128 55.5
Duzib106G1724 Durio zibethinus HOM05D003793 ORTHO05D004471 1.7e-30 136.7 108 61.1
HanXRQChr11g0342111 Helianthus annuus HOM05D003793 ORTHO05D004471 1.7e-30 136.7 120 56.7
Cc09_g09690 Coffea canephora HOM05D003793 ORTHO05D004471 2.2e-30 136.3 92 76.1
Ah.04g156140 Amaranthus hybridus HOM05D003793 ORTHO05D004471 2.9e-30 136.0 118 55.9
Dinv29122 Davidia involucrata HOM05D003793 ORTHO05D004471 3.7e-30 135.6 116 56.0
Duzib177G0459 Durio zibethinus HOM05D003793 ORTHO05D004471 3.7e-30 135.6 108 59.3
Migut.J00551 Erythranthe guttata HOM05D003793 ORTHO05D004471 3.7e-30 135.6 119 56.3
Solyc08g076360.4 Solanum lycopersicum HOM05D003793 ORTHO05D004471 3.7e-30 135.6 118 56.8
Lsat_1_v5_gn_2_104420 Lactuca sativa HOM05D003793 ORTHO05D004471 4.9e-30 135.2 120 55.0
QL09p020586 Quercus lobata HOM05D003793 ORTHO05D004471 4.9e-30 135.2 128 52.3
COL.COLO4_15127 Corchorus olitorius HOM05D003793 ORTHO05D004471 6.4e-30 134.8 116 56.0
Phvul.011G017100 Phaseolus vulgaris HOM05D003793 ORTHO05D004471 8.3e-30 134.4 120 56.7
Rhsim09G0214000 Rhododendron simsii HOM05D003793 ORTHO05D004471 8.3e-30 134.4 135 51.1
SalBow3G2197 Salvia bowleyana HOM05D003793 ORTHO05D004471 8.3e-30 134.4 122 54.1
Gohir.A02G114300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 1.1e-29 134.0 116 54.3
vmacro22191 Vaccinium macrocarpon HOM05D003793 ORTHO05D004471 1.1e-29 134.0 127 54.3
Actinidia34215 Actinidia chinensis HOM05D003793 ORTHO05D004471 1.4e-29 133.7 125 55.2
Glyma.12G014300 Glycine max HOM05D003793 ORTHO05D004471 1.4e-29 133.7 122 55.7
PSO210G3487 Papaver somniferum HOM05D003793 ORTHO05D004471 1.4e-29 133.7 131 53.4
Gohir.D03G055300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 1.9e-29 133.3 120 52.5
Gorai.003G058100 Gossypium raimondii HOM05D003793 ORTHO05D004471 1.9e-29 133.3 120 52.5
Psat6g024400 Pisum sativum HOM05D003793 ORTHO05D004471 1.9e-29 133.3 120 55.0
unitig_578.g15801 Utricularia gibba HOM05D003793 ORTHO05D004471 1.9e-29 133.3 124 57.3
SGA_v2.0_scaffold126G33927 Striga asiatica HOM05D003793 ORTHO05D004471 2.4e-29 132.9 126 53.2
Glyma.12G014200 Glycine max HOM05D003793 ORTHO05D004471 3.2e-29 132.5 124 56.5
Zm00001eb251860 Zea mays HOM05D003793 ORTHO05D004471 3.2e-29 132.5 120 56.7
ECA238G4812 Erigeron canadensis HOM05D003793 ORTHO05D004471 4.1e-29 132.1 132 50.8
Medtr1g014690 Medicago truncatula HOM05D003793 ORTHO05D004471 4.1e-29 132.1 117 56.4
FvH4_6g17810 Fragaria vesca HOM05D003793 ORTHO05D004471 5.4e-29 131.7 125 55.2
PSO210G3154 Papaver somniferum HOM05D003793 ORTHO05D004471 5.4e-29 131.7 126 53.2
vmacro09916 Vaccinium macrocarpon HOM05D003793 ORTHO05D004471 5.4e-29 131.7 129 51.2
Glyma.09G222800 Glycine max HOM05D003793 ORTHO05D004471 9.2e-29 131.0 124 55.6
VMungo1127G2010 Vigna mungo HOM05D003793 ORTHO05D004471 9.2e-29 131.0 120 55.8
Ca_13083_v3 Cicer arietinum L. HOM05D003793 ORTHO05D004471 1.2e-28 130.6 118 55.1
Cc11_g00040 Coffea canephora HOM05D003793 ORTHO05D004471 1.2e-28 130.6 92 67.4
PGR142G3821 Punica granatum HOM05D003793 ORTHO05D004471 1.6e-28 130.2 124 55.6
TPR.G38857 Trifolium pratense HOM05D003793 ORTHO05D004471 1.6e-28 130.2 121 54.5
Hund26874 Selenicereus undatus HOM05D003793 ORTHO05D004471 2.0e-28 129.8 120 54.2
Sc13g0011010 Simmondsia chinensis HOM05D003793 ORTHO05D004471 2.0e-28 129.8 118 55.1
AUR62028213 Chenopodium quinoa HOM05D003793 ORTHO05D004471 2.7e-28 129.4 127 52.8
Hma1.2p1_0419F.1_g149530 Hydrangea macrophylla HOM05D003793 ORTHO05D004471 2.7e-28 129.4 113 54.0
Potri.013G077000 Populus trichocarpa HOM05D003793 ORTHO05D004471 2.7e-28 129.4 123 48.8
Phvul.011G017200 Phaseolus vulgaris HOM05D003793 ORTHO05D004471 3.5e-28 129.0 120 54.2
Manes.08G160400 Manihot esculenta HOM05D003793 ORTHO05D004471 6.0e-28 128.3 132 51.5
EL10Ac3g05040 Beta vulgaris HOM05D003793 ORTHO05D004471 1.0e-27 127.5 126 50.0
Medtr4g036005 Medicago truncatula HOM05D003793 ORTHO05D004471 1.3e-27 127.1 121 53.7
CDE12G0793 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 1.7e-27 126.7 116 53.4
FAN05G0338 Fragaria x ananassa HOM05D003793 ORTHO05D004471 1.7e-27 126.7 134 50.7
Nn1g09155 Nelumbo nucifera HOM05D003793 ORTHO05D004471 1.7e-27 126.7 127 55.1
Duzib177G0347 Durio zibethinus HOM05D003793 ORTHO05D004471 2.3e-27 126.3 108 54.6
FAN02G3282 Fragaria x ananassa HOM05D003793 ORTHO05D004471 2.3e-27 126.3 135 50.4
Lj3g0009427 Lotus japonicus HOM05D003793 ORTHO05D004471 2.3e-27 126.3 120 52.5
MD14G1015100 Malus domestica HOM05D003793 ORTHO05D004471 2.3e-27 126.3 123 52.8
Os02g0701600 Oryza sativa ssp. japonica HOM05D003793 ORTHO05D004471 2.3e-27 126.3 116 52.6
Prupe.7G118300 Prunus persica HOM05D003793 ORTHO05D004471 2.3e-27 126.3 123 52.0
VMungo1127G0200 Vigna mungo HOM05D003793 ORTHO05D004471 2.3e-27 126.3 130 50.0
FAN05G4652 Fragaria x ananassa HOM05D003793 ORTHO05D004471 3.0e-27 125.9 134 50.7
MD12G1017400 Malus domestica HOM05D003793 ORTHO05D004471 3.9e-27 125.6 123 52.8
HPP92_022760 Vanilla planifolia HOM05D003793 ORTHO05D004471 8.6e-27 124.4 116 52.6
TAR375G0772 Trochodendron aralioides HOM05D003793 ORTHO05D004471 1.5e-26 123.6 127 53.5
arahy.Tifrunner.gnm1.ann1.SYC9J3 Arachis hypogaea HOM05D003793 ORTHO05D004471 1.9e-26 123.2 133 52.6
Gohir.A13G157500 Gossypium hirsutum HOM05D003793 ORTHO05D004471 1.9e-26 123.2 120 51.7
RcHm_v2.0_Chr3g0472061 Rosa chinensis HOM05D003793 ORTHO05D004471 1.9e-26 123.2 122 54.9
Thhalv10018768m.g Eutrema salsugineum HOM05D003793 ORTHO05D004471 2.5e-26 122.9 132 49.2
AUR62002095 Chenopodium quinoa HOM05D003793 ORTHO05D004471 3.3e-26 122.5 138 50.7
Aqoxy6G01753 Aquilegia oxysepala HOM05D003793 ORTHO05D004471 5.6e-26 121.7 119 54.6
THA.LOC104805718 Tarenaya hassleriana HOM05D003793 ORTHO05D004471 5.6e-26 121.7 125 49.6
Sp5g19260 Schrenkiella parvula HOM05D003793 ORTHO05D004471 9.5e-26 120.9 120 52.5
CDE11G0124 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 2.8e-25 119.4 129 47.3
AL2G19520 Arabidopsis lyrata HOM05D003793 ORTHO05D004471 3.6e-25 119.0 122 53.3
arahy.Tifrunner.gnm1.ann1.L925XS Arachis hypogaea HOM05D003793 ORTHO05D004471 3.6e-25 119.0 133 49.6
CiPaw.05G212400 Carya illinoinensis HOM05D003793 ORTHO05D004471 3.6e-25 119.0 92 59.8
Eucgr.K00068 Eucalyptus grandis HOM05D003793 ORTHO05D004471 3.6e-25 119.0 123 50.4
Sed0025175 Sechium edule HOM05D003793 ORTHO05D004471 3.6e-25 119.0 163 41.7
Actinidia33800 Actinidia chinensis HOM05D003793 ORTHO05D004471 4.7e-25 118.6 130 49.2
CsaV3_2G036010 Cucumis sativus L. HOM05D003793 ORTHO05D004471 4.7e-25 118.6 157 42.0
arahy.Tifrunner.gnm1.ann1.TXPN3Z Arachis hypogaea HOM05D003793 ORTHO05D004471 6.2e-25 118.2 133 49.6
MELO3C024736.2 Cucumis melo HOM05D003793 ORTHO05D004471 6.2e-25 118.2 163 41.1
Nn3g21149 Nelumbo nucifera HOM05D003793 ORTHO05D004471 8.1e-25 117.9 122 50.8
HPP92_027662 Vanilla planifolia HOM05D003793 ORTHO05D004471 8.1e-25 117.9 116 51.7
HPP92_027670 Vanilla planifolia HOM05D003793 ORTHO05D004471 8.1e-25 117.9 116 51.7
CDE02G3720 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 1.4e-24 117.1 129 49.6
arahy.Tifrunner.gnm1.ann1.5NG4EY Arachis hypogaea HOM05D003793 ORTHO05D004471 1.8e-24 116.7 121 52.1
AT1G64970 Arabidopsis thaliana HOM05D003793 ORTHO05D004471 2.3e-24 116.3 118 53.4
THA.LOC104821707 Tarenaya hassleriana HOM05D003793 ORTHO05D004471 3.1e-24 115.9 124 49.2
Atru.chr12.1860 Acer truncatum HOM05D003793 ORTHO05D004471 4.0e-24 115.5 94 58.5
Hund00469 Selenicereus undatus HOM05D003793 ORTHO05D004471 4.0e-24 115.5 146 43.2
AagrBONN_evm.TU.Sc2ySwM_362.1718 Anthoceros agrestis HOM05D003793 ORTHO05D004471 5.2e-24 115.2 120 46.7
Cc06_g18700 Coffea canephora HOM05D003793 ORTHO05D004471 5.2e-24 115.2 63 90.5
GSVIVG01024322001 Vitis vinifera HOM05D003793 ORTHO05D004471 5.2e-24 115.2 92 57.6
ClCG02G007700 Citrullus lanatus HOM05D003793 ORTHO05D004471 6.8e-24 114.8 158 41.1
SEGI_24486 Sequoiadendron giganteum HOM05D003793 ORTHO05D004471 8.9e-24 114.4 117 50.4
Atru.chr12.1866 Acer truncatum HOM05D003793 ORTHO05D004471 1.2e-23 114.0 92 57.6
Aa31LG2G2170 Aethionema arabicum HOM05D003793 ORTHO05D004471 1.2e-23 114.0 132 47.7
BcaB05g24071 Brassica carinata HOM05D003793 ORTHO05D004471 1.2e-23 114.0 120 50.8
BcaC03g16025 Brassica carinata HOM05D003793 ORTHO05D004471 1.2e-23 114.0 120 50.8
A02p12940 Brassica napus HOM05D003793 ORTHO05D004471 1.2e-23 114.0 120 50.8
C02p37750 Brassica napus HOM05D003793 ORTHO05D004471 1.2e-23 114.0 120 50.8
BolC2t09793H Brassica oleracea HOM05D003793 ORTHO05D004471 1.2e-23 114.0 120 50.8
BraA02t06348Z Brassica rapa HOM05D003793 ORTHO05D004471 1.2e-23 114.0 120 50.8
Carub.0002s1011 Capsella rubella HOM05D003793 ORTHO05D004471 1.2e-23 114.0 122 52.5
Aqoxy6G01754 Aquilegia oxysepala HOM05D003793 ORTHO05D004471 2.0e-23 113.2 124 49.2
BraA02t07388Z Brassica rapa HOM05D003793 ORTHO05D004471 2.6e-23 112.8 120 50.8
A02p23940 Brassica napus HOM05D003793 ORTHO05D004471 3.4e-23 112.5 120 50.0
C02p21050 Brassica napus HOM05D003793 ORTHO05D004471 3.4e-23 112.5 120 50.0
Hund00468 Selenicereus undatus HOM05D003793 ORTHO05D004471 3.4e-23 112.5 136 44.9
Aa31LG2G2160 Aethionema arabicum HOM05D003793 ORTHO05D004471 5.8e-23 111.7 138 44.9
Mapoly0025s0046 Marchantia polymorpha HOM05D003793 ORTHO05D004471 7.5e-23 111.3 117 47.9
BcaC03g14668 Brassica carinata HOM05D003793 ORTHO05D004471 9.8e-23 110.9 116 50.9
BolC2t08246H Brassica oleracea HOM05D003793 ORTHO05D004471 9.8e-23 110.9 120 49.2
Rhsim09G0190300 Rhododendron simsii HOM05D003793 ORTHO05D004471 1.7e-22 110.2 97 56.7
SMO145G0054 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 1.7e-22 110.2 125 46.4
CANSAT21G0915 Cannabis sativa HOM05D003793 ORTHO05D004471 2.2e-22 109.8 119 48.7
Lalb_Chr05g0211181 Lupinus albus HOM05D003793 ORTHO05D004471 2.9e-22 109.4 123 52.0
CARHR056370 Cardamine hirsuta HOM05D003793 ORTHO05D004471 6.4e-22 108.2 121 49.6
ATR0829G050 Amborella trichopoda HOM05D003793 ORTHO05D004471 3.9e-19 99.0 108 43.5
PGR142G4176 Punica granatum HOM05D003793 ORTHO05D004471 3.9e-19 99.0 137 44.5
SMO119G0398 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 3.9e-19 99.0 115 41.7
Pp3c11_23800 Physcomitrium patens HOM05D003793 ORTHO05D004471 1.9e-18 96.7 112 46.4
SMO119G0172 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 2.5e-18 96.3 116 42.2
SMO115G0333 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 5.6e-18 95.1 116 42.2
HPP92_027155 Vanilla planifolia HOM05D003793 ORTHO05D004471 7.3e-18 94.7 91 52.7
PGR142G2095 Punica granatum HOM05D003793 ORTHO05D004471 2.8e-17 92.8 115 47.0
SMO351G0374 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 4.7e-17 92.0 116 41.4
QL09p020551 Quercus lobata HOM05D003793 ORTHO05D004471 3.1e-16 89.4 59 62.7
Peaxi162Scf00052g00016 Petunia axillaris HOM05D003793 ORTHO05D004471 6.8e-16 88.2 129 42.6
PGR142G3948 Punica granatum HOM05D003793 ORTHO05D004471 6.8e-16 88.2 112 49.1
Nitab4.5_0004045g0040 Nicotiana tabacum HOM05D003793 ORTHO05D004471 2.6e-15 86.3 53 73.6
Cre09.g393400 Chlamydomonas reinhardtii HOM05D003793 ORTHO05D004471 2.2e-14 83.2 120 40.8
FAN14G1236 Fragaria x ananassa HOM05D003793 ORTHO05D004471 2.2e-14 83.2 95 50.5
MCO16G568 Micromonas commoda HOM05D003793 ORTHO05D004471 3.7e-14 82.4 116 42.2
CSS0037165 Camellia sinensis var. sinensis HOM05D003793 ORTHO05D004471 4.9e-14 82.0 60 58.3
ATR1057G001 Amborella trichopoda HOM05D003793 ORTHO05D038313 4.1e-13 79.0 57 61.4
ATR0829G208 Amborella trichopoda HOM05D003793 ORTHO05D004471 1.6e-12 77.0 53 64.2
Mapoly0921s0001 Marchantia polymorpha HOM05D003793 ORTHO05D004471 1.3e-11 73.9 83 49.4
CDE11G0369 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 2.3e-11 73.2 91 45.1
MCO15G681 Micromonas commoda HOM05D003793 ORTHO05D004471 5.1e-11 72.0 107 43.0
Cre14.g624350 Chlamydomonas reinhardtii HOM05D003793 ORTHO05D004471 6.6e-11 71.6 164 29.9
MCO13G309 Micromonas commoda HOM05D003793 ORTHO05D004471 6.6e-11 71.6 106 42.5
PRCOL_00002005 Prasinoderma coloniale HOM05D003793 ORTHO05D004471 4.3e-10 68.9 104 38.5
CSS0048120 Camellia sinensis var. sinensis HOM05D003793 ORTHO05D004471 5.8e-07 58.5 61 45.9
Cpa.g.sc43.146 Carica papaya HOM05D003793 ORTHO05D004471 1.3e-06 57.4 49 57.1
Cc06_g18750 Coffea canephora HOM05D003793 ORTHO05D004471 1.7e-06 57.0 35 88.6
RcHm_v2.0_Chr5g0034841 Rosa chinensis HOM05D003793 ORTHO05D038313 3.8e-06 55.8 29 79.3
QL09p020572 Quercus lobata HOM05D003793 ORTHO05D004471 4.9e-06 55.5 58 51.7
PGSC0003DMG400043233 Solanum tuberosum HOM05D001535 ORTHO05D003710 6.4e-06 55.1 108 36.1


User provided reference genes

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