Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g26570 Coffea canephora HOM05D006197 ORTHO05D007718 8.3e-54 213.4 103 100.0
Cc00_g23310 Coffea canephora HOM05D006197 ORTHO05D007718 1.6e-52 209.1 103 97.1
Cc08_g01810 Coffea canephora HOM05D006197 ORTHO05D007718 2.0e-52 208.8 103 97.1
Cc00_g30230 Coffea canephora HOM05D006197 ORTHO05D007718 5.0e-51 204.1 103 95.1
Cc00_g31810 Coffea canephora HOM05D006197 ORTHO05D007718 3.9e-43 177.9 89 96.6
PGSC0003DMG400024214 Solanum tuberosum HOM05D006197 ORTHO05D007718 7.0e-37 157.1 106 74.5
Sopen05g026900 Solanum pennellii HOM05D006197 ORTHO05D007718 1.2e-36 156.4 106 73.6
Sopen08g025860 Solanum pennellii HOM05D006197 ORTHO05D007718 1.2e-36 156.4 106 73.6
Solyc08g077280.1 Solanum lycopersicum HOM05D006197 ORTHO05D007718 2.1e-36 155.6 103 70.9
Nitab4.5_0006693g0020 Nicotiana tabacum HOM05D006197 ORTHO05D007718 6.0e-36 154.1 105 73.3
Nitab4.5_0002055g0120 Nicotiana tabacum HOM05D006197 ORTHO05D007718 8.6e-35 150.2 103 70.9
Lsat_1_v5_gn_6_66400 Lactuca sativa HOM05D006197 ORTHO05D007718 8.1e-33 143.7 112 66.1
Migut.N01790 Erythranthe guttata HOM05D006197 ORTHO05D007718 2.3e-32 142.1 105 65.7
Peaxi162Scf00084g00099 Petunia axillaris HOM05D006197 ORTHO05D007718 3.1e-32 141.7 100 73.0
CSS0031892 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 4.0e-32 141.4 107 66.4
CSS0033989 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 4.0e-32 141.4 107 66.4
CSS0037645 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 4.0e-32 141.4 107 66.4
Hma1.2p1_0311F.1_g121310 Hydrangea macrophylla HOM05D006197 ORTHO05D007718 6.8e-32 140.6 103 68.9
Oeu014592.2 Olea europaea HOM05D006197 ORTHO05D007718 6.8e-32 140.6 104 68.3
SalBow1G7863 Salvia bowleyana HOM05D006197 ORTHO05D007718 8.9e-32 140.2 105 70.5
Cc08_g01990 Coffea canephora HOM05D006197 ORTHO05D007718 1.2e-31 139.8 67 97.0
Cc08_g01910 Coffea canephora HOM05D006197 ORTHO05D007718 1.5e-31 139.4 103 68.9
Dinv28915 Davidia involucrata HOM05D006197 ORTHO05D007718 1.5e-31 139.4 103 66.0
Haze_08298 Corylus avellana HOM05D006197 ORTHO05D007718 3.4e-31 138.3 103 68.0
Cc08_g02050 Coffea canephora HOM05D006197 ORTHO05D007718 7.5e-31 137.1 77 87.0
PGR042G3581 Punica granatum HOM05D006197 ORTHO05D007718 7.5e-31 137.1 103 65.0
ECA240G0414 Erigeron canadensis HOM05D006197 ORTHO05D007718 1.3e-30 136.3 109 64.2
CiPaw.11G087500 Carya illinoinensis HOM05D006197 ORTHO05D007718 1.7e-30 136.0 104 65.4
Potri.001G146700 Populus trichocarpa HOM05D006197 ORTHO05D007718 1.7e-30 136.0 103 65.0
Duzib068G0126 Durio zibethinus HOM05D006197 ORTHO05D007718 2.2e-30 135.6 103 66.0
Cfa012386 Carpinus fangiana HOM05D006197 ORTHO05D007718 2.9e-30 135.2 103 68.0
QL12p007107 Quercus lobata HOM05D006197 ORTHO05D007718 2.9e-30 135.2 106 63.2
MD16G1269400 Malus domestica HOM05D006197 ORTHO05D007718 3.7e-30 134.8 103 68.9
GSVIVG01013230001 Vitis vinifera HOM05D006197 ORTHO05D007718 3.7e-30 134.8 103 67.0
Duzib205G0278 Durio zibethinus HOM05D006197 ORTHO05D007718 4.9e-30 134.4 103 66.0
HanXRQChr08g0234831 Helianthus annuus HOM05D006197 ORTHO05D007718 4.9e-30 134.4 108 66.7
Gohir.A04G000300 Gossypium hirsutum HOM05D006197 ORTHO05D007718 8.3e-30 133.7 103 67.0
Oeu006551.1 Olea europaea HOM05D006197 ORTHO05D007718 1.4e-29 132.9 104 64.4
FAN04G1051 Fragaria x ananassa HOM05D006197 ORTHO05D007718 1.9e-29 132.5 103 65.0
Gohir.A08G159600 Gossypium hirsutum HOM05D006197 ORTHO05D007718 3.2e-29 131.7 103 66.0
Gohir.D08G180000 Gossypium hirsutum HOM05D006197 ORTHO05D007718 3.2e-29 131.7 103 66.0
Gorai.004G188500 Gossypium raimondii HOM05D006197 ORTHO05D007718 3.2e-29 131.7 103 66.0
Manes.15G173000 Manihot esculenta HOM05D006197 ORTHO05D007718 3.2e-29 131.7 104 64.4
Ciclev10033154m.g Citrus clementina HOM05D006197 ORTHO05D007718 4.1e-29 131.3 111 62.2
FAN18G0540 Fragaria x ananassa HOM05D006197 ORTHO05D007718 4.1e-29 131.3 103 67.0
Eucgr.E00313 Eucalyptus grandis HOM05D006197 ORTHO05D007718 5.4e-29 131.0 104 65.4
Gorai.008G229000 Gossypium raimondii HOM05D006197 ORTHO05D007718 5.4e-29 131.0 103 65.0
unitig_747.g21291 Utricularia gibba HOM05D006197 ORTHO05D007718 5.4e-29 131.0 103 62.1
DCAR_008300 Daucus carota HOM05D006197 ORTHO05D007718 7.1e-29 130.6 103 65.0
Atru.chr6.1773 Acer truncatum HOM05D006197 ORTHO05D007718 9.2e-29 130.2 106 63.2
Prupe.5G046200 Prunus persica HOM05D006197 ORTHO05D007718 2.1e-28 129.0 105 66.7
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 2.7e-28 128.6 88 70.5
FAN13G1034 Fragaria x ananassa HOM05D006197 ORTHO05D007718 4.6e-28 127.9 100 64.0
Sabra01G0115400 Salix brachista HOM05D006197 ORTHO05D007718 4.6e-28 127.9 103 63.1
TWI81G0993 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 6.0e-28 127.5 103 63.1
COL.COLO4_17110 Corchorus olitorius HOM05D006197 ORTHO05D007718 7.8e-28 127.1 103 63.1
MBI11_g07528_MAGBIO Magnolia biondii HOM05D006197 ORTHO05D007718 1.0e-27 126.7 107 62.6
RcHm_v2.0_Chr7g0208331 Rosa chinensis HOM05D006197 ORTHO05D007718 1.3e-27 126.3 103 64.1
Thecc.03G234100 Theobroma cacao HOM05D006197 ORTHO05D007718 1.3e-27 126.3 103 64.1
Gohir.D12G213400 Gossypium hirsutum HOM05D006197 ORTHO05D007718 1.7e-27 125.9 103 64.1
Sed0016057 Sechium edule HOM05D006197 ORTHO05D007718 1.7e-27 125.9 105 61.9
THA.LOC104819961 Tarenaya hassleriana HOM05D006197 ORTHO05D007718 1.7e-27 125.9 106 59.4
Cpa.g.sc6.409 Carica papaya HOM05D006197 ORTHO05D007718 2.3e-27 125.6 103 63.1
Nn1g03717 Nelumbo nucifera HOM05D006197 ORTHO05D007718 3.0e-27 125.2 99 61.6
Rhsim11G0011100 Rhododendron simsii HOM05D006197 ORTHO05D007718 3.0e-27 125.2 106 61.3
FAN08G0099 Fragaria x ananassa HOM05D006197 ORTHO05D007718 3.9e-27 124.8 103 65.0
Thhalv10006335m.g Eutrema salsugineum HOM05D006197 ORTHO05D007718 5.1e-27 124.4 104 60.6
Aqoxy1G03814 Aquilegia oxysepala HOM05D006197 ORTHO05D007718 6.6e-27 124.0 107 61.7
BcaC07g40556 Brassica carinata HOM05D006197 ORTHO05D007718 6.6e-27 124.0 103 62.1
A09p52120 Brassica napus HOM05D006197 ORTHO05D007718 6.6e-27 124.0 103 62.1
CANSAT64G2368 Cannabis sativa HOM05D006197 ORTHO05D007718 8.6e-27 123.6 112 60.7
arahy.Tifrunner.gnm1.ann1.M9L3KI Arachis hypogaea HOM05D006197 ORTHO05D007718 1.1e-26 123.2 108 58.3
arahy.Tifrunner.gnm1.ann1.PC0NS4 Arachis hypogaea HOM05D006197 ORTHO05D007718 1.1e-26 123.2 108 58.3
EL10Ac5g12195 Beta vulgaris HOM05D006197 ORTHO05D007718 1.1e-26 123.2 100 61.0
Sed0004723 Sechium edule HOM05D006197 ORTHO05D007718 1.1e-26 123.2 103 59.2
BcaB02g07441 Brassica carinata HOM05D006197 ORTHO05D007718 1.5e-26 122.9 104 60.6
AUR62018769 Chenopodium quinoa HOM05D006197 ORTHO05D007718 1.5e-26 122.9 103 61.2
MBI02_g29718_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009071 1.5e-26 122.9 103 62.1
Sp5g03300 Schrenkiella parvula HOM05D006197 ORTHO05D007718 1.5e-26 122.9 103 61.2
VMungo1215G1228 Vigna mungo HOM05D006197 ORTHO05D007718 1.5e-26 122.9 105 60.0
Aa31LG10G14080 Aethionema arabicum HOM05D006197 ORTHO05D007718 1.9e-26 122.5 107 61.7
BcaC08g45013 Brassica carinata HOM05D006197 ORTHO05D007718 2.5e-26 122.1 104 61.5
BolC6t37808H Brassica oleracea HOM05D006197 ORTHO05D007718 2.5e-26 122.1 104 61.5
AL5G41940 Arabidopsis lyrata HOM05D006197 ORTHO05D007718 3.3e-26 121.7 104 60.6
AT3G59840 Arabidopsis thaliana HOM05D006197 ORTHO05D007718 3.3e-26 121.7 104 60.6
Carub.0005s2656 Capsella rubella HOM05D006197 ORTHO05D007718 3.3e-26 121.7 104 60.6
Dinv25183 Davidia involucrata HOM05D002285 ORTHO05D009255 3.3e-26 121.7 110 60.0
BcaC07g40434 Brassica carinata HOM05D006197 ORTHO05D007718 4.3e-26 121.3 103 60.2
A07p24860 Brassica napus HOM05D006197 ORTHO05D007718 4.3e-26 121.3 104 62.5
BraA07t30130Z Brassica rapa HOM05D006197 ORTHO05D007718 4.3e-26 121.3 104 62.5
C06p26450 Brassica napus HOM05D006197 ORTHO05D007718 5.6e-26 120.9 104 60.6
CARHR170180 Cardamine hirsuta HOM05D006197 ORTHO05D007718 7.3e-26 120.6 103 60.2
Glyma.11G041000 Glycine max HOM05D006197 ORTHO05D007718 7.3e-26 120.6 103 59.2
AUR62007231 Chenopodium quinoa HOM05D006197 ORTHO05D007718 2.8e-25 118.6 103 59.2
TAR624G0346 Trochodendron aralioides HOM05D006197 ORTHO05D007718 2.8e-25 118.6 100 59.0
Ca_24632_v3 Cicer arietinum L. HOM05D006197 ORTHO05D007718 3.6e-25 118.2 104 56.7
VMungo1215G3393 Vigna mungo HOM05D006197 ORTHO05D007718 3.6e-25 118.2 108 59.3
Lj2g0021118 Lotus japonicus HOM05D006197 ORTHO05D007718 4.7e-25 117.9 103 58.3
Medtr5g013975 Medicago truncatula HOM05D006197 ORTHO05D007718 4.7e-25 117.9 108 56.5
TWI15G0656 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 8.1e-25 117.1 105 62.9
PSO832G1675 Papaver somniferum HOM05D006197 ORTHO05D007718 1.1e-24 116.7 106 61.3
Psat2g174760 Pisum sativum HOM05D006197 ORTHO05D007718 1.4e-24 116.3 107 57.0
MELO3C003373.2 Cucumis melo HOM05D006197 ORTHO05D007718 3.1e-24 115.2 103 54.4
CsaV3_3G049530 Cucumis sativus L. HOM05D006197 ORTHO05D007718 3.1e-24 115.2 103 53.4
PSO210G4997 Papaver somniferum HOM05D006197 ORTHO05D007718 4.0e-24 114.8 104 60.6
Ah.12g053650 Amaranthus hybridus HOM05D006197 ORTHO05D007718 5.2e-24 114.4 103 57.3
Glyma.01G201200 Glycine max HOM05D006197 ORTHO05D007718 6.8e-24 114.0 109 55.0
Phvul.002G004500 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 1.2e-23 113.2 103 56.3
ATR1088G052 Amborella trichopoda HOM05D006197 ORTHO05D007718 9.9e-23 110.2 110 55.5
Lalb_Chr09g0323941 Lupinus albus HOM05D006197 ORTHO05D007718 2.9e-22 108.6 119 51.3
BolC8t51081H Brassica oleracea HOM05D000403 ORTHO05D004426 4.9e-22 107.8 94 58.5
Duzib084G1370 Durio zibethinus HOM05D006197 ORTHO05D007718 6.4e-22 107.5 103 58.3
Sc01g0007760 Simmondsia chinensis HOM05D006197 ORTHO05D007718 8.4e-22 107.1 65 78.5
TPR.G6747 Trifolium pratense HOM05D006197 ORTHO05D007718 1.7e-19 99.4 64 73.4
Phvul.002G003700 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 3.9e-19 98.2 103 51.5
Os05g0500450 Oryza sativa ssp. japonica HOM05D006197 ORTHO05D007718 5.1e-19 97.8 103 50.5
AagrBONN_evm.TU.Sc2ySwM_368.296 Anthoceros agrestis HOM05D006197 ORTHO05D007718 6.2e-17 90.9 54 66.7
Mapoly0127s0016 Marchantia polymorpha HOM05D006197 ORTHO05D007718 1.8e-16 89.4 80 52.5
CAN.G799.18 Capsicum annuum HOM05D006197 ORTHO05D007718 5.3e-16 87.8 55 76.4
Mapoly0046s0110 Marchantia polymorpha HOM05D006197 ORTHO05D007718 2.6e-15 85.5 81 55.6
Eucgr.C01972 Eucalyptus grandis HOM05D006197 ORTHO05D007718 4.4e-15 84.7 67 58.2
CBR_g8168 Chara braunii HOM05D006197 ORTHO05D007718 9.9e-15 83.6 52 71.2
Migut.E01523 Erythranthe guttata HOM05D006197 ORTHO05D007718 9.9e-15 83.6 137 37.2
Migut.E01526 Erythranthe guttata HOM05D006197 ORTHO05D007718 2.2e-14 82.4 71 54.9
Nn1g08520 Nelumbo nucifera HOM05D006197 ORTHO05D007718 2.9e-14 82.0 99 48.5
Pp3c14_9970 Physcomitrium patens HOM05D006197 ORTHO05D007718 3.8e-14 81.6 106 45.3
SMO119G0374 Selaginella moellendorffii HOM05D006197 ORTHO05D007718 2.7e-12 75.5 53 67.9
Cc08_g01940 Coffea canephora HOM05D000011 ORTHO05D000157 6.0e-12 74.3 32 100.0
CDE05G1960 Ceratophyllum demersum HOM05D006197 ORTHO05D007718 2.6e-07 58.9 67 47.8
Cc08_g02010 Coffea canephora HOM05D000011 ORTHO05D000157 6.4e-06 54.3 24 95.8


User provided reference genes

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