Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g26130 Coffea canephora HOM05D003598 ORTHO05D004198 1.2e-90 336.7 184 100.0
Cc08_g05000 Coffea canephora HOM05D003598 ORTHO05D004198 8.9e-67 257.3 187 80.2
Cc08_g04800 Coffea canephora HOM05D003598 ORTHO05D004198 3.9e-54 215.3 193 69.4
Cc08_g04900 Coffea canephora HOM05D003598 ORTHO05D004198 7.6e-50 201.1 148 81.1
Cc00_g23020 Coffea canephora HOM05D003598 ORTHO05D004198 1.2e-47 193.7 159 74.8
Peaxi162Scf00193g00013 Petunia axillaris HOM05D003598 ORTHO05D004198 3.1e-43 179.1 185 56.2
Nitab4.5_0001659g0130 Nicotiana tabacum HOM05D003598 ORTHO05D004198 4.0e-43 178.7 185 58.4
Nitab4.5_0002941g0020 Nicotiana tabacum HOM05D003598 ORTHO05D004198 6.9e-43 177.9 185 58.9
Sopen03g038270 Solanum pennellii HOM05D003598 ORTHO05D004198 2.0e-42 176.4 189 55.0
PGSC0003DMG400005723 Solanum tuberosum HOM05D003598 ORTHO05D004198 2.0e-42 176.4 189 55.0
Solyc03g119420.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 7.6e-42 174.5 185 55.1
CAN.G1425.3 Capsicum annuum HOM05D003598 ORTHO05D004198 1.0e-41 174.1 188 55.9
Solyc08g075730.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 1.0e-41 174.1 185 55.1
Nitab4.5_0001450g0070 Nicotiana tabacum HOM05D003598 ORTHO05D004198 1.3e-41 173.7 185 56.8
PGSC0003DMG400030870 Solanum tuberosum HOM05D003598 ORTHO05D004198 1.3e-41 173.7 185 55.7
Sopen08g024380 Solanum pennellii HOM05D003598 ORTHO05D004198 2.9e-41 172.6 185 54.6
Cc00_g17080 Coffea canephora HOM05D003598 ORTHO05D004198 1.4e-40 170.2 180 59.4
Dinv05241 Davidia involucrata HOM05D003598 ORTHO05D004198 3.2e-40 169.1 198 52.0
Dinv32105 Davidia involucrata HOM05D003598 ORTHO05D004198 4.2e-40 168.7 198 53.5
CSS0049191 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 2.7e-39 166.0 199 53.8
MSTRG.1768 Avicennia marina HOM05D003598 ORTHO05D004198 3.5e-39 165.6 186 54.3
Migut.E01352 Erythranthe guttata HOM05D003598 ORTHO05D004198 4.6e-39 165.2 187 54.5
ECA240G3477 Erigeron canadensis HOM05D003598 ORTHO05D004198 6.0e-39 164.9 194 51.5
Actinidia11173 Actinidia chinensis HOM05D003598 ORTHO05D004198 1.3e-38 163.7 199 51.3
GSVIVG01010181001 Vitis vinifera HOM05D003598 ORTHO05D004198 1.3e-38 163.7 199 52.3
Lsat_1_v5_gn_3_7261 Lactuca sativa HOM05D003598 ORTHO05D004198 8.7e-38 161.0 191 53.4
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 1.1e-37 160.6 197 51.8
vmacro09196 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 1.5e-37 160.2 196 52.6
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 2.5e-37 159.5 190 53.2
HanXRQChr03g0086691 Helianthus annuus HOM05D003598 ORTHO05D004198 7.4e-37 157.9 189 50.8
SalBow8G4212 Salvia bowleyana HOM05D003598 ORTHO05D004198 7.4e-37 157.9 185 51.4
Hma1.2p1_0218F.1_g092550 Hydrangea macrophylla HOM05D003598 ORTHO05D004198 9.6e-37 157.5 190 53.2
Haze_22545 Corylus avellana HOM05D003598 ORTHO05D004198 2.1e-36 156.4 190 51.1
unitig_899.g14735 Utricularia gibba HOM05D003598 ORTHO05D004198 2.1e-36 156.4 184 51.6
HanXRQChr17g0533671 Helianthus annuus HOM05D003598 ORTHO05D004198 8.2e-36 154.5 183 55.2
Cfa013868 Carpinus fangiana HOM05D003598 ORTHO05D004198 1.1e-35 154.1 190 51.1
CiPaw.07G157700 Carya illinoinensis HOM05D003598 ORTHO05D004198 4.1e-35 152.1 190 50.5
Cc08_g04950 Coffea canephora HOM05D003598 ORTHO05D004198 5.3e-35 151.8 102 84.3
CiPaw.08G060100 Carya illinoinensis HOM05D003598 ORTHO05D004198 9.0e-35 151.0 183 50.3
THA.LOC104820751 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 9.0e-35 151.0 197 48.2
Atru.chr9.2066 Acer truncatum HOM05D003598 ORTHO05D004198 1.2e-34 150.6 202 51.0
Rhsim06G0126100 Rhododendron simsii HOM05D003598 ORTHO05D004198 1.2e-34 150.6 189 50.8
THA.LOC104802853 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 7.6e-34 147.9 197 48.2
QL02p009504 Quercus lobata HOM05D003598 ORTHO05D004198 2.9e-33 146.0 194 52.1
DCAR_002566 Daucus carota HOM05D003598 ORTHO05D004198 6.5e-33 144.8 205 42.0
Lj6A721G58 Lonicera japonica HOM05D003598 ORTHO05D004198 6.5e-33 144.8 195 48.7
Potri.002G062200 Populus trichocarpa HOM05D003598 ORTHO05D004198 6.5e-33 144.8 193 49.2
Ciclev10032368m.g Citrus clementina HOM05D003598 ORTHO05D004198 8.4e-33 144.4 199 46.7
Cpa.g.sc51.45 Carica papaya HOM05D003598 ORTHO05D004198 1.4e-32 143.7 187 44.9
Medtr4g108000 Medicago truncatula HOM05D003598 ORTHO05D004198 1.9e-32 143.3 188 46.3
PGR042G0762 Punica granatum HOM05D003598 ORTHO05D004198 1.9e-32 143.3 199 47.2
Ca_03027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 4.2e-32 142.1 196 45.4
Medtr4g074480 Medicago truncatula HOM05D003598 ORTHO05D004198 4.2e-32 142.1 188 46.3
Ca_14027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 5.5e-32 141.7 196 45.4
Psat7g173800 Pisum sativum HOM05D003598 ORTHO05D004198 9.3e-32 141.0 191 46.1
Potri.005G198900 Populus trichocarpa HOM05D003598 ORTHO05D004198 1.2e-31 140.6 197 47.7
TWI77G0411 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 1.2e-31 140.6 197 48.2
Rhsim04G0081000 Rhododendron simsii HOM05D003598 ORTHO05D004198 4.6e-31 138.7 195 49.2
Manes.01G073300 Manihot esculenta HOM05D003598 ORTHO05D004198 7.9e-31 137.9 197 48.7
CSS0011637 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D000909 1.0e-30 137.5 187 51.3
Aa31LG11G11250 Aethionema arabicum HOM05D003598 ORTHO05D004198 3.0e-30 136.0 188 46.3
Glyma.11G103000 Glycine max HOM05D003598 ORTHO05D004198 3.0e-30 136.0 191 46.1
Glyma.12G141400 Glycine max HOM05D003598 ORTHO05D004198 3.0e-30 136.0 188 45.7
Phvul.L003737 Phaseolus vulgaris HOM05D003598 ORTHO05D004198 3.9e-30 135.6 185 46.5
Eucgr.J00852 Eucalyptus grandis HOM05D003598 ORTHO05D004198 5.1e-30 135.2 198 47.0
Prupe.1G345400 Prunus persica HOM05D003598 ORTHO05D004198 5.1e-30 135.2 195 46.7
MD16G1000500 Malus domestica HOM05D003598 ORTHO05D004198 6.7e-30 134.8 197 44.7
Thecc.01G274200 Theobroma cacao HOM05D003598 ORTHO05D004198 6.7e-30 134.8 187 47.1
TAR371G1198 Trochodendron aralioides HOM05D003598 ORTHO05D004198 8.7e-30 134.4 196 46.4
AUR62000767 Chenopodium quinoa HOM05D003598 ORTHO05D004198 1.1e-29 134.0 195 49.2
MD13G1007600 Malus domestica HOM05D003598 ORTHO05D004198 1.1e-29 134.0 183 47.0
Oeu042207.1 Olea europaea HOM05D003598 ORTHO05D004198 1.1e-29 134.0 149 57.0
Oeu045722.3 Olea europaea HOM05D003598 ORTHO05D004198 1.5e-29 133.7 155 57.4
TPR.G32324 Trifolium pratense HOM05D003598 ORTHO05D004198 1.9e-29 133.3 189 46.0
A10p21130 Brassica napus HOM05D003598 ORTHO05D004198 2.5e-29 132.9 190 43.2
BraA10t44179Z Brassica rapa HOM05D001989 ORTHO05D004198 3.3e-29 132.5 190 44.2
FvH4_4g36731 Fragaria vesca HOM05D003598 ORTHO05D004198 4.3e-29 132.1 187 47.6
Sc10g0007060 Simmondsia chinensis HOM05D003598 ORTHO05D004198 4.3e-29 132.1 178 51.7
Lj3g0003654 Lotus japonicus HOM05D003598 ORTHO05D004198 5.7e-29 131.7 197 43.7
RcHm_v2.0_Chr4g0446451 Rosa chinensis HOM05D003598 ORTHO05D004198 9.7e-29 131.0 187 47.1
Duzib133G1064 Durio zibethinus HOM05D003598 ORTHO05D004198 1.3e-28 130.6 190 46.3
TWI53G1744 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 1.3e-28 130.6 197 47.7
vmacro12412 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 1.3e-28 130.6 159 52.2
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.6e-28 130.2 187 47.6
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.6e-28 130.2 170 50.0
COL.COLO4_11873 Corchorus olitorius HOM05D003598 ORTHO05D004198 2.2e-28 129.8 176 49.4
arahy.Tifrunner.gnm1.ann1.01A9SY Arachis hypogaea HOM05D003598 ORTHO05D004198 2.8e-28 129.4 198 43.4
arahy.Tifrunner.gnm1.ann1.Y4R7AD Arachis hypogaea HOM05D003598 ORTHO05D004198 2.8e-28 129.4 198 43.4
Carub.0008s0217 Capsella rubella HOM05D003598 ORTHO05D004198 3.7e-28 129.0 179 44.7
VMungo1127G1291 Vigna mungo HOM05D003598 ORTHO05D004198 3.7e-28 129.0 180 46.1
COL.COLO4_09060 Corchorus olitorius HOM05D003598 ORTHO05D004198 6.3e-28 128.3 176 47.7
Sed0024830 Sechium edule HOM05D003598 ORTHO05D004198 8.2e-28 127.9 195 43.6
CANSAT64G1690 Cannabis sativa HOM05D003598 ORTHO05D004198 1.1e-27 127.5 199 43.7
AUR62005202 Chenopodium quinoa HOM05D003598 ORTHO05D004198 1.1e-27 127.5 186 47.3
Gohir.A11G124700 Gossypium hirsutum HOM05D003598 ORTHO05D004198 1.1e-27 127.5 193 43.0
MBI03_g24013_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 1.1e-27 127.5 198 44.9
Nn4g24926 Nelumbo nucifera HOM05D003598 ORTHO05D004198 1.1e-27 127.5 196 44.9
Sed0014776 Sechium edule HOM05D003598 ORTHO05D004198 1.1e-27 127.5 195 43.6
Gorai.007G139000 Gossypium raimondii HOM05D003598 ORTHO05D004198 1.4e-27 127.1 190 42.6
AUR62015205 Chenopodium quinoa HOM05D003598 ORTHO05D004198 3.1e-27 125.9 197 47.2
Gohir.D11G129900 Gossypium hirsutum HOM05D003598 ORTHO05D004198 3.1e-27 125.9 190 42.1
Gohir.A08G186600 Gossypium hirsutum HOM05D003598 ORTHO05D004198 4.1e-27 125.6 190 46.3
Gorai.004G216900 Gossypium raimondii HOM05D003598 ORTHO05D004198 4.1e-27 125.6 190 45.8
Sp6g25920 Schrenkiella parvula HOM05D003598 ORTHO05D004198 6.9e-27 124.8 190 41.1
ATR0618G278 Amborella trichopoda HOM05D003598 ORTHO05D004198 9.0e-27 124.4 169 47.3
AUR62017668 Chenopodium quinoa HOM05D003598 ORTHO05D004198 1.2e-26 124.0 196 46.4
Lalb_Chr03g0024851 Lupinus albus HOM05D003598 ORTHO05D004198 1.2e-26 124.0 172 45.3
Ah.01g012930 Amaranthus hybridus HOM05D003598 ORTHO05D004198 2.0e-26 123.2 199 42.7
Gohir.D08G204800 Gossypium hirsutum HOM05D003598 ORTHO05D004198 2.0e-26 123.2 190 45.3
CARHR194630 Cardamine hirsuta HOM05D003598 ORTHO05D004198 2.6e-26 122.9 190 43.7
Ah.01g001620 Amaranthus hybridus HOM05D003598 ORTHO05D004198 3.4e-26 122.5 180 46.7
Aqoxy3G01046 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 3.4e-26 122.5 199 45.2
MELO3C024034.2 Cucumis melo HOM05D003598 ORTHO05D004198 3.4e-26 122.5 194 42.3
AL6G29630 Arabidopsis lyrata HOM05D003598 ORTHO05D004198 4.5e-26 122.1 190 43.2
Thhalv10015717m.g Eutrema salsugineum HOM05D003598 ORTHO05D004198 7.7e-26 121.3 189 42.9
MBI06_g34034_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 7.7e-26 121.3 188 43.1
Prupe.8G036300 Prunus persica HOM05D003598 ORTHO05D004198 7.7e-26 121.3 193 43.0
CDE04G2679 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 1.3e-25 120.6 169 46.7
Sc06g0004000 Simmondsia chinensis HOM05D003598 ORTHO05D004198 1.3e-25 120.6 153 52.9
BcaC04g18694 Brassica carinata HOM05D003598 ORTHO05D004198 2.2e-25 119.8 194 42.8
PSO782G0946 Papaver somniferum HOM05D003598 ORTHO05D004198 2.9e-25 119.4 199 44.2
Carub.0006s1666 Capsella rubella HOM05D003598 ORTHO05D004198 3.8e-25 119.0 191 41.9
CDE02G3181 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 3.8e-25 119.0 169 45.0
Lsat_1_v5_gn_6_87300 Lactuca sativa HOM05D003598 ORTHO05D004198 3.8e-25 119.0 171 42.7
MBI06_g36503_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 5.0e-25 118.6 188 42.0
PSO063G0008 Papaver somniferum HOM05D003598 ORTHO05D004198 5.0e-25 118.6 199 44.2
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 6.5e-25 118.2 198 38.9
BolC3t13511H Brassica oleracea HOM05D003598 ORTHO05D004198 6.5e-25 118.2 198 38.9
BraA03t10207Z Brassica rapa HOM05D003598 ORTHO05D004198 6.5e-25 118.2 198 38.9
CsaV3_3G031510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 8.5e-25 117.9 194 41.2
AT5G18400 Arabidopsis thaliana HOM05D003598 ORTHO05D004198 1.1e-24 117.5 190 41.6
Sabra05G0151500 Salix brachista HOM05D003598 ORTHO05D004198 1.4e-24 117.1 243 37.9
Os04g0674400 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 1.9e-24 116.7 179 42.5
CDE05G0161 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 2.5e-24 116.3 189 42.3
TAR629G0796 Trochodendron aralioides HOM05D003598 ORTHO05D004198 3.2e-24 115.9 159 47.2
A03p08820 Brassica napus HOM05D003598 ORTHO05D004198 4.2e-24 115.5 198 38.9
BolC9t58693H Brassica oleracea HOM05D003598 ORTHO05D004198 4.2e-24 115.5 190 40.5
Os04g0682050 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 4.2e-24 115.5 179 42.5
QL09p042139 Quercus lobata HOM05D003598 ORTHO05D004198 1.6e-23 113.6 175 46.3
Zm00001eb066470 Zea mays HOM05D003598 ORTHO05D004198 1.6e-23 113.6 173 45.7
C03p10310 Brassica napus HOM05D003598 ORTHO05D004198 2.1e-23 113.2 205 37.6
Duzib138G0618 Durio zibethinus HOM05D003598 ORTHO05D004198 2.1e-23 113.2 174 45.4
Sabra02G0050100 Salix brachista HOM05D003598 ORTHO05D004198 3.6e-23 112.5 199 42.7
EL10Ac9g22923 Beta vulgaris HOM05D003598 ORTHO05D004198 4.6e-23 112.1 185 44.3
Zm00001eb066420 Zea mays HOM05D003598 ORTHO05D004198 6.1e-23 111.7 173 45.1
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.9e-22 109.0 180 42.8
CSS0032311 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 1.7e-20 103.6 175 45.7
DCAR_030401 Daucus carota HOM05D003598 ORTHO05D004198 2.2e-20 103.2 157 45.9
Aqoxy2G02255 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 6.3e-20 101.7 158 44.3
HPP92_009730 Vanilla planifolia HOM05D003598 ORTHO05D004198 1.4e-19 100.5 179 39.7
Hund03395 Selenicereus undatus HOM05D003598 ORTHO05D004198 2.4e-19 99.8 197 40.6
Hund19509 Selenicereus undatus HOM05D003598 ORTHO05D004198 3.1e-19 99.4 164 46.3
Nn6g34923 Nelumbo nucifera HOM05D003598 ORTHO05D004198 4.5e-18 95.5 202 37.6
ClCG10G011850 Citrullus lanatus HOM05D003598 ORTHO05D004198 1.3e-17 94.0 187 35.3
Lsat_1_v5_gn_6_87320 Lactuca sativa HOM05D003598 ORTHO05D009814 2.2e-17 93.2 172 37.8
RcHm_v2.0_Chr3g0449691 Rosa chinensis HOM05D003598 ORTHO05D004198 2.2e-17 93.2 150 42.7
Lj1g0005490 Lotus japonicus HOM05D003598 ORTHO05D004198 5.5e-16 88.6 167 38.3
SEGI_23700 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 4.7e-15 85.5 184 40.8
SEGI_19284 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 7.9e-15 84.7 189 40.2
SGA_v2.0_scaffold277G46719 Striga asiatica HOM05D003598 ORTHO05D004198 1.8e-14 83.6 71 64.8
SGA_v2.0_scaffold49G18286 Striga asiatica HOM05D003598 ORTHO05D004198 3.0e-14 82.8 64 67.2
Ah.07g198410 Amaranthus hybridus HOM05D003598 ORTHO05D004198 3.3e-13 79.3 71 64.8
Sc20g0002190 Simmondsia chinensis HOM05D003598 ORTHO05D004198 4.4e-13 79.0 153 43.1
Lsat_1_v5_gn_3_62741 Lactuca sativa HOM05D003598 ORTHO05D004198 9.7e-13 77.8 116 47.4
Hund19574 Selenicereus undatus HOM05D003598 ORTHO05D004198 1.3e-12 77.4 71 64.8
C09p58280 Brassica napus HOM05D003598 ORTHO05D004198 3.7e-12 75.9 102 39.2
CDE05G1904 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 9.1e-11 71.2 63 58.7
BcaB08g36681 Brassica carinata HOM05D003598 ORTHO05D004198 2.0e-10 70.1 103 36.9
Hund19575 Selenicereus undatus HOM05D003598 ORTHO05D004198 2.0e-10 70.1 57 66.7
Hund31482 Selenicereus undatus HOM05D003598 ORTHO05D004198 7.7e-10 68.2 94 54.3
QL02p006829 Quercus lobata HOM05D006704 ORTHO05D004198 2.9e-09 66.2 85 51.8
QL04p035400 Quercus lobata HOM05D000021 ORTHO05D000010 2.9e-09 66.2 113 44.2
Mapoly0032s0120 Marchantia polymorpha HOM05D003598 ORTHO05D004198 5.0e-09 65.5 222 29.7
SMO367G0289 Selaginella moellendorffii HOM05D003598 ORTHO05D004198 5.0e-09 65.5 191 30.9
Actinidia24399 Actinidia chinensis HOM05D003598 ORTHO05D004198 1.2e-07 60.8 72 47.2
Glyma.U018351 Glycine max HOM05D003598 ORTHO05D004198 1.2e-07 60.8 53 58.5
CsaV3_3G032510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 1.6e-07 60.5 51 60.8
TAR256G0009 Trochodendron aralioides HOM05D017516 ORTHO05D019582 2.7e-07 59.7 171 33.9
GSVIVG01009204001 Vitis vinifera HOM05D017516 ORTHO05D019582 5.2e-06 55.5 196 31.1
QL09p042102 Quercus lobata HOM05D003598 ORTHO05D004198 8.8e-06 54.7 118 39.8


User provided reference genes

Program Settings