Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g25850 Coffea canephora HOM05D012087 ORTHO05D005932 4.0e-126 454.9 249 100.0
Nitab4.5_0001211g0150 Nicotiana tabacum HOM05D012087 ORTHO05D005932 6.5e-20 102.1 230 37.8
Dinv38746 Davidia involucrata HOM05D008369 ORTHO05D005932 5.5e-19 99.0 216 39.4
Cfa019277 Carpinus fangiana HOM05D008369 ORTHO05D005932 9.4e-19 98.2 248 39.5
MD06G1197700 Malus domestica HOM05D008369 ORTHO05D005932 2.7e-18 96.7 198 42.9
FAN18G3211 Fragaria x ananassa HOM05D008369 ORTHO05D005932 1.8e-17 94.0 216 38.0
Sopen03g034710 Solanum pennellii HOM05D012087 ORTHO05D005932 1.3e-15 87.8 210 36.2
MSTRG.11371 Avicennia marina HOM05D012087 ORTHO05D005932 1.7e-15 87.4 211 37.4
PGSC0003DMG400024562 Solanum tuberosum HOM05D012087 ORTHO05D005932 8.2e-15 85.1 210 36.2
Dinv10658 Davidia involucrata HOM05D008369 ORTHO05D005932 1.1e-14 84.7 216 33.3
MD14G1205100 Malus domestica HOM05D008369 ORTHO05D005932 1.1e-14 84.7 216 38.0
Solyc03g115730.3 Solanum lycopersicum HOM05D012087 ORTHO05D005932 1.8e-14 84.0 214 36.4
Nitab4.5_0005900g0030 Nicotiana tabacum HOM05D012087 ORTHO05D005932 5.3e-14 82.4 228 36.0
Peaxi162Scf00274g00335 Petunia axillaris HOM05D012087 ORTHO05D005932 5.3e-14 82.4 189 39.2
FvH4_5g14530 Fragaria vesca HOM05D008369 ORTHO05D005932 7.0e-14 82.0 211 37.0
CAN.G479.59 Capsicum annuum HOM05D012087 ORTHO05D005932 1.2e-13 81.3 199 36.7
FAN13G2099 Fragaria x ananassa HOM05D008369 ORTHO05D005932 1.6e-13 80.9 211 36.0
SalBow5G3698 Salvia bowleyana HOM05D012087 ORTHO05D005932 1.6e-13 80.9 225 33.8
FAN08G2699 Fragaria x ananassa HOM05D008369 ORTHO05D005932 2.9e-12 76.6 213 36.6
Oeu052457.1 Olea europaea HOM05D012087 ORTHO05D005932 6.5e-12 75.5 112 39.3
CSS0001536 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 5.5e-11 72.4 245 28.6
Rhsim08G0152100 Rhododendron simsii HOM05D008369 ORTHO05D005932 5.5e-11 72.4 203 31.0
Haze_07652 Corylus avellana HOM05D008369 ORTHO05D005932 9.4e-11 71.6 227 35.2
RcHm_v2.0_Chr7g0182121 Rosa chinensis HOM05D008369 ORTHO05D005932 1.2e-10 71.2 210 33.8
TAR006G0004 Trochodendron aralioides HOM05D009095 ORTHO05D005932 2.1e-10 70.5 207 33.8
Migut.D01759 Erythranthe guttata HOM05D012087 ORTHO05D005932 3.6e-10 69.7 214 34.1
Ah.02g113780 Amaranthus hybridus HOM05D008369 ORTHO05D005932 1.0e-09 68.2 197 35.5
Actinidia04866 Actinidia chinensis HOM05D008369 ORTHO05D005932 3.0e-09 66.6 212 27.8
Medtr4g108990 Medicago truncatula HOM05D008369 ORTHO05D005932 3.0e-09 66.6 211 31.8
Lalb_Chr12g0196981 Lupinus albus HOM05D008369 ORTHO05D005932 5.2e-09 65.9 211 33.6
Hund09825 Selenicereus undatus HOM05D008369 ORTHO05D005932 1.5e-08 64.3 189 29.1
Thecc.03G094300 Theobroma cacao HOM05D008369 ORTHO05D005932 1.5e-08 64.3 208 28.4
PGR044G0243 Punica granatum HOM05D008369 ORTHO05D005932 2.6e-08 63.5 209 35.4
CSS0024821 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 3.3e-08 63.2 245 26.9
COL.COLO4_36949 Corchorus olitorius HOM05D008369 ORTHO05D005932 9.7e-08 61.6 207 29.5
Duzib084G1416 Durio zibethinus HOM05D008369 ORTHO05D005932 9.7e-08 61.6 207 31.4
HanXRQChr05g0155031 Helianthus annuus HOM05D008369 ORTHO05D011941 9.7e-08 61.6 125 42.4
QL10p017723 Quercus lobata HOM05D008369 ORTHO05D005932 1.7e-07 60.8 202 35.6
Manes.05G106200 Manihot esculenta HOM05D009095 ORTHO05D005932 4.8e-07 59.3 211 31.3
PGR102G2341 Punica granatum HOM05D009095 ORTHO05D005932 6.3e-07 58.9 200 33.5
Sed0006867 Sechium edule HOM05D008369 ORTHO05D005932 6.3e-07 58.9 204 36.3
VMungo1215G3129 Vigna mungo HOM05D008369 ORTHO05D005932 1.1e-06 58.2 195 27.2
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 2.4e-06 57.0 63 46.0
BcaB01g06057 Brassica carinata HOM05D010063 ORTHO05D011941 2.4e-06 57.0 125 35.2
BolC3t12923H Brassica oleracea HOM05D010063 ORTHO05D011941 2.4e-06 57.0 125 35.2
Prupe.5G198500 Prunus persica HOM05D008369 ORTHO05D005932 2.4e-06 57.0 200 36.0
Ciclev10032785m.g Citrus clementina HOM05D009095 ORTHO05D005932 3.1e-06 56.6 217 29.5
Gohir.D11G035400 Gossypium hirsutum HOM05D008369 ORTHO05D005932 3.1e-06 56.6 210 29.5
Manes.06G089401 Manihot esculenta HOM05D000041 ORTHO05D006140 3.1e-06 56.6 247 29.6
Phvul.002G169000 Phaseolus vulgaris HOM05D013667 ORTHO05D005932 3.1e-06 56.6 71 45.1
Psat4g049480 Pisum sativum HOM05D008369 ORTHO05D005932 3.1e-06 56.6 118 33.9
Gohir.A11G032000 Gossypium hirsutum HOM05D008369 ORTHO05D005932 4.1e-06 56.2 209 29.7
Haze_11958 Corylus avellana HOM05D009095 ORTHO05D005932 9.1e-06 55.1 60 50.0
Duzib251G0477 Durio zibethinus HOM05D009095 ORTHO05D005932 9.1e-06 55.1 69 44.9


User provided reference genes

Program Settings