Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 1.2e-97 359.8 178 100.0
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 9.0e-64 247.3 144 86.8
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 3.4e-55 218.8 146 76.0
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 3.4e-55 218.8 146 76.0
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 3.4e-55 218.8 146 76.0
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 3.4e-55 218.8 146 76.0
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 2.2e-54 216.1 146 75.3
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 4.9e-54 214.9 136 77.2
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 4.9e-54 214.9 137 77.4
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 8.4e-54 214.2 146 74.7
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 2.4e-53 212.6 137 78.1
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 3.2e-53 212.2 145 73.1
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 7.1e-53 211.1 146 74.7
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 1.2e-52 210.3 146 73.3
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 1.2e-52 210.3 137 77.4
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 1.6e-52 209.9 146 74.0
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 1.6e-52 209.9 146 75.3
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 2.1e-52 209.5 145 74.5
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 2.1e-52 209.5 145 70.3
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 2.1e-52 209.5 165 67.3
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 4.6e-52 208.4 145 71.7
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 7.9e-52 207.6 146 71.2
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 1.0e-51 207.2 146 73.3
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.3e-51 206.8 146 71.9
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.8e-51 206.5 165 66.1
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.3e-51 206.1 146 71.2
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 2.3e-51 206.1 145 71.0
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 2.3e-51 206.1 146 72.6
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 3.9e-51 205.3 146 72.6
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 5.1e-51 204.9 145 70.3
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 6.7e-51 204.5 146 69.9
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 6.7e-51 204.5 146 69.9
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 6.7e-51 204.5 145 71.7
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 8.7e-51 204.1 148 70.3
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 8.7e-51 204.1 146 70.5
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 8.7e-51 204.1 138 76.1
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 1.1e-50 203.8 145 70.3
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 1.5e-50 203.4 146 70.5
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.9e-50 203.0 147 69.4
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.9e-50 203.0 146 71.2
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.5e-50 202.6 146 70.5
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 2.5e-50 202.6 145 69.0
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 7.4e-50 201.1 145 69.0
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 9.6e-50 200.7 146 69.9
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 1.3e-49 200.3 146 68.5
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 1.3e-49 200.3 145 68.3
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.3e-49 200.3 137 73.0
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 1.3e-49 200.3 146 70.5
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 1.3e-49 200.3 146 69.9
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 1.3e-49 200.3 146 71.2
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 1.6e-49 199.9 146 71.2
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 2.1e-49 199.5 146 69.2
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 2.1e-49 199.5 146 71.2
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 2.1e-49 199.5 137 73.7
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 2.1e-49 199.5 146 70.5
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 2.8e-49 199.1 146 68.5
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 2.8e-49 199.1 145 68.3
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 3.7e-49 198.7 137 71.5
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 4.8e-49 198.4 146 68.5
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 8.1e-49 197.6 146 69.9
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 1.1e-48 197.2 146 70.5
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 1.8e-48 196.4 146 68.5
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.8e-48 196.4 147 68.7
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 3.1e-48 195.7 149 66.4
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.1e-48 195.7 145 66.9
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.1e-48 195.7 145 66.9
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 4.0e-48 195.3 146 67.8
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.0e-48 195.3 145 66.9
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 5.3e-48 194.9 148 68.9
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 6.9e-48 194.5 146 67.8
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 6.9e-48 194.5 146 67.8
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 9.0e-48 194.1 146 65.8
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 1.2e-47 193.7 146 67.1
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 1.2e-47 193.7 146 65.8
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 1.5e-47 193.4 156 63.5
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.5e-47 193.4 146 69.2
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 1.5e-47 193.4 146 69.2
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 1.5e-47 193.4 149 67.8
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.5e-47 193.4 146 68.5
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 1.5e-47 193.4 146 66.4
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 2.0e-47 193.0 146 66.4
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 2.6e-47 192.6 146 66.4
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.6e-47 192.6 176 60.8
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 3.4e-47 192.2 146 66.4
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.4e-47 192.2 146 69.9
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 3.4e-47 192.2 146 64.4
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 4.5e-47 191.8 146 67.1
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.5e-47 191.8 145 68.3
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 4.5e-47 191.8 146 68.5
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 5.8e-47 191.4 146 65.8
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 5.8e-47 191.4 138 71.7
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 5.8e-47 191.4 146 67.8
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 5.8e-47 191.4 146 64.4
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 7.6e-47 191.0 156 62.8
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 7.6e-47 191.0 156 62.8
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 7.6e-47 191.0 156 62.8
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 7.6e-47 191.0 146 64.4
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 7.6e-47 191.0 146 67.8
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 7.6e-47 191.0 146 67.1
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 9.9e-47 190.7 145 67.6
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 1.3e-46 190.3 146 65.8
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 1.7e-46 189.9 156 62.8
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 2.2e-46 189.5 146 69.2
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 2.9e-46 189.1 137 68.6
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 2.9e-46 189.1 136 72.8
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 2.9e-46 189.1 146 68.5
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 2.9e-46 189.1 156 63.5
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 4.9e-46 188.3 151 64.9
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 4.9e-46 188.3 151 64.9
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 8.4e-46 187.6 147 67.3
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.1e-45 187.2 136 69.1
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.1e-45 187.2 135 68.1
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 1.4e-45 186.8 155 63.9
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.4e-45 186.8 146 69.2
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 1.9e-45 186.4 137 69.3
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 9.3e-45 184.1 137 68.6
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 1.6e-44 183.3 137 67.2
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 3.0e-43 179.1 156 62.8
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.5e-42 176.8 170 58.8
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 5.6e-42 174.9 137 67.2
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 5.6e-42 174.9 146 62.3
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 4.0e-40 168.7 137 59.9
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 4.0e-40 168.7 140 60.0
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 6.9e-40 167.9 144 62.5
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 9.0e-40 167.5 107 76.6
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.2e-39 167.2 135 64.4
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.3e-38 163.7 137 59.1
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 8.4e-38 161.0 132 65.9
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 2.5e-37 159.5 109 68.8
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 3.2e-37 159.1 156 52.6
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 5.5e-37 158.3 148 54.7
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 5.1e-35 151.8 150 50.7
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 2.5e-34 149.4 128 61.7
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 1.8e-32 143.3 114 63.2
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.7e-30 136.7 77 81.8
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 8.5e-30 134.4 102 65.7
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 1.4e-29 133.7 145 47.6
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 8.8e-27 124.4 156 46.2
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.5e-26 123.6 192 44.3
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 1.3e-25 120.6 113 56.6
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.1e-24 115.9 108 55.6
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 1.7e-22 110.2 93 62.4
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.2e-22 109.8 108 53.7
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 4.1e-16 89.0 135 45.2
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.3e-14 84.0 53 75.5
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.3e-14 84.0 53 75.5
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 6.5e-14 81.6 87 49.4
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 1.9e-13 80.1 92 50.0
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 2.5e-13 79.7 122 36.9
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 3.7e-09 65.9 44 72.7
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 3.7e-09 65.9 44 72.7
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.8e-09 65.5 62 58.1
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 8.2e-09 64.7 44 72.7
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.4e-08 63.9 44 70.5
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.8e-08 63.5 44 70.5
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 2.4e-08 63.2 44 70.5
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 4.1e-08 62.4 44 68.2


User provided reference genes

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