Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g25360 Coffea canephora HOM05D000462 ORTHO05D154124 4.5e-61 237.7 114 100.0
Cc05_g03120 Coffea canephora HOM05D000462 ORTHO05D001280 2.1e-13 79.3 83 54.2
AUR62038022 Chenopodium quinoa HOM05D000462 ORTHO05D001280 6.0e-13 77.8 70 57.1
MSTRG.4987 Avicennia marina HOM05D000462 ORTHO05D001280 1.8e-12 76.3 69 58.0
MELO3C006217.2 Cucumis melo HOM05D000462 ORTHO05D001280 1.8e-12 76.3 69 56.5
Oeu020237.1 Olea europaea HOM05D000462 ORTHO05D001280 2.3e-12 75.9 82 53.7
Eucgr.E01754 Eucalyptus grandis HOM05D000462 ORTHO05D001280 3.9e-12 75.1 82 53.7
AUR62014514 Chenopodium quinoa HOM05D000462 ORTHO05D006023 5.1e-12 74.7 70 54.3
Sed0011480 Sechium edule HOM05D000462 ORTHO05D001280 5.1e-12 74.7 90 51.1
Solyc01g081390.4 Solanum lycopersicum HOM05D000462 ORTHO05D001280 5.1e-12 74.7 82 51.2
Sopen01g032960 Solanum pennellii HOM05D000462 ORTHO05D001280 5.1e-12 74.7 82 51.2
Nitab4.5_0015362g0010 Nicotiana tabacum HOM05D000462 ORTHO05D001280 6.7e-12 74.3 69 56.5
unitig_747.g22050 Utricularia gibba HOM05D000462 ORTHO05D001280 6.7e-12 74.3 69 55.1
Peaxi162Scf00907g10027 Petunia axillaris HOM05D000462 ORTHO05D001280 8.7e-12 73.9 82 52.4
TWI32G0699 Tripterygium wilfordii HOM05D000462 ORTHO05D001280 8.7e-12 73.9 69 56.5
CSS0035065 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D001280 1.5e-11 73.2 69 55.1
Migut.N01675 Erythranthe guttata HOM05D000462 ORTHO05D001280 1.9e-11 72.8 82 53.7
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 2.5e-11 72.4 69 53.6
Duzib128G0793 Durio zibethinus HOM05D000462 ORTHO05D001280 3.3e-11 72.0 82 52.4
Nitab4.5_0000792g0050 Nicotiana tabacum HOM05D000462 ORTHO05D001280 3.3e-11 72.0 69 55.1
PGR031G0127 Punica granatum HOM05D000462 ORTHO05D001280 3.3e-11 72.0 69 55.1
Sc04g0008460 Simmondsia chinensis HOM05D000462 ORTHO05D002455 3.3e-11 72.0 82 50.0
Thecc.05G233600 Theobroma cacao HOM05D000462 ORTHO05D001280 4.3e-11 71.6 69 55.1
Ah.05g177150 Amaranthus hybridus HOM05D000462 ORTHO05D001280 5.6e-11 71.2 82 50.0
CAN.G992.15 Capsicum annuum HOM05D000462 ORTHO05D001280 5.6e-11 71.2 86 48.8
Duzib106G1150 Durio zibethinus HOM05D000462 ORTHO05D001280 5.6e-11 71.2 69 53.6
QL04p053156 Quercus lobata HOM05D000462 ORTHO05D001280 5.6e-11 71.2 69 53.6
HanXRQChr13g0411641 Helianthus annuus HOM05D000462 ORTHO05D001280 7.4e-11 70.9 82 50.0
PGSC0003DMG400044320 Solanum tuberosum HOM05D000462 ORTHO05D001280 7.4e-11 70.9 82 47.6
Atru.chr2.1658 Acer truncatum HOM05D000462 ORTHO05D001280 9.6e-11 70.5 69 55.1
Cpa.g.sc73.75 Carica papaya HOM05D000462 ORTHO05D001280 9.6e-11 70.5 69 53.6
ECA240G0227 Erigeron canadensis HOM05D000067 ORTHO05D001280 9.6e-11 70.5 82 50.0
Manes.08G157200 Manihot esculenta HOM05D000462 ORTHO05D001280 9.6e-11 70.5 86 48.8
PSO063G7523 Papaver somniferum HOM05D000462 ORTHO05D001280 9.6e-11 70.5 69 52.2
PSO782G4210 Papaver somniferum HOM05D000462 ORTHO05D001280 9.6e-11 70.5 69 52.2
SalBow4G1052 Salvia bowleyana HOM05D000462 ORTHO05D001280 9.6e-11 70.5 86 48.8
SalBow4G2925 Salvia bowleyana HOM05D000462 ORTHO05D001280 9.6e-11 70.5 86 48.8
Thhalv10015991m.g Eutrema salsugineum HOM05D000462 ORTHO05D001280 1.3e-10 70.1 82 48.8
Gohir.A13G091100 Gossypium hirsutum HOM05D000462 ORTHO05D001280 1.3e-10 70.1 69 53.6
Gohir.D13G101600 Gossypium hirsutum HOM05D000462 ORTHO05D001280 1.3e-10 70.1 69 53.6
Gorai.013G113700 Gossypium raimondii HOM05D000462 ORTHO05D001280 1.3e-10 70.1 69 53.6
HanXRQChr03g0082991 Helianthus annuus HOM05D000462 ORTHO05D001280 1.3e-10 70.1 69 53.6
Potri.013G071900 Populus trichocarpa HOM05D000462 ORTHO05D001280 1.3e-10 70.1 69 53.6
CiPaw.01G114800 Carya illinoinensis HOM05D000462 ORTHO05D001280 1.6e-10 69.7 69 52.2
DCAR_015746 Daucus carota HOM05D000462 ORTHO05D001280 1.6e-10 69.7 69 53.6
Nn1g09220 Nelumbo nucifera HOM05D000462 ORTHO05D001280 1.6e-10 69.7 69 53.6
Sabra13G0062100 Salix brachista HOM05D000462 ORTHO05D001280 1.6e-10 69.7 69 53.6
Lsat_1_v5_gn_5_59100 Lactuca sativa HOM05D000462 ORTHO05D001280 2.1e-10 69.3 69 53.6
Ciclev10031652m.g Citrus clementina HOM05D000462 ORTHO05D001280 2.8e-10 68.9 69 53.6
CsaV3_3G009960 Cucumis sativus L. HOM05D000462 ORTHO05D001280 2.8e-10 68.9 69 53.6
Prupe.2G104200 Prunus persica HOM05D000462 ORTHO05D001280 3.6e-10 68.6 69 50.7
SGA_v2.0_scaffold4G02222 Striga asiatica HOM05D000462 ORTHO05D001280 3.6e-10 68.6 69 55.1
FvH4_7g07680 Fragaria vesca HOM05D000462 ORTHO05D001280 4.8e-10 68.2 69 52.2
FAN03G0745 Fragaria x ananassa HOM05D000462 ORTHO05D001280 4.8e-10 68.2 69 52.2
FAN06G0538 Fragaria x ananassa HOM05D000462 ORTHO05D001280 4.8e-10 68.2 69 52.2
FAN10G3121 Fragaria x ananassa HOM05D000462 ORTHO05D001280 4.8e-10 68.2 69 52.2
MD02G1233400 Malus domestica HOM05D000462 ORTHO05D001280 4.8e-10 68.2 69 52.2
MD07G1080200 Malus domestica HOM05D000462 ORTHO05D001280 4.8e-10 68.2 69 52.2
VMungo1080G1750 Vigna mungo HOM05D000462 ORTHO05D001280 4.8e-10 68.2 69 50.7
MBI04_g30780_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000457 6.2e-10 67.8 82 48.8
THA.LOC104820819 Tarenaya hassleriana HOM05D000462 ORTHO05D001280 8.1e-10 67.4 69 52.2
arahy.Tifrunner.gnm1.ann1.6KN2PA Arachis hypogaea HOM05D000462 ORTHO05D001280 1.8e-09 66.2 69 49.3
arahy.Tifrunner.gnm1.ann1.U11QFP Arachis hypogaea HOM05D000462 ORTHO05D001280 1.8e-09 66.2 69 49.3
CANSAT21G0649 Cannabis sativa HOM05D000462 ORTHO05D001280 1.8e-09 66.2 69 52.2
Aa31LG11G12010 Aethionema arabicum HOM05D000462 ORTHO05D001280 2.4e-09 65.9 69 50.7
AL6G28720 Arabidopsis lyrata HOM05D000462 ORTHO05D001280 2.4e-09 65.9 86 47.7
AT5G17630 Arabidopsis thaliana HOM05D000462 ORTHO05D001280 2.4e-09 65.9 86 47.7
Psat1g169480 Pisum sativum HOM05D000462 ORTHO05D001280 2.4e-09 65.9 84 45.2
Rhsim12G0144400 Rhododendron simsii HOM05D000462 ORTHO05D001280 2.4e-09 65.9 69 52.2
BcaC04g18773 Brassica carinata HOM05D000462 ORTHO05D001280 3.1e-09 65.5 69 50.7
A10p21780 Brassica napus HOM05D000462 ORTHO05D001280 3.1e-09 65.5 69 50.7
C09p59540 Brassica napus HOM05D000462 ORTHO05D001280 3.1e-09 65.5 69 50.7
BolC9t58792H Brassica oleracea HOM05D000462 ORTHO05D001280 3.1e-09 65.5 69 50.7
BraA10t44238Z Brassica rapa HOM05D000462 ORTHO05D001280 3.1e-09 65.5 69 50.7
Dinv43968 Davidia involucrata HOM05D000462 ORTHO05D001280 3.1e-09 65.5 69 50.7
Medtr2g029180 Medicago truncatula HOM05D000462 ORTHO05D001280 3.1e-09 65.5 84 45.2
Phvul.005G022300 Phaseolus vulgaris HOM05D000462 ORTHO05D001280 3.1e-09 65.5 84 45.2
BcaB08g36757 Brassica carinata HOM05D000462 ORTHO05D001280 4.0e-09 65.1 69 50.7
Carub.0006s1587 Capsella rubella HOM05D000462 ORTHO05D001280 4.0e-09 65.1 86 46.5
CARHR195550 Cardamine hirsuta HOM05D000462 ORTHO05D001280 4.0e-09 65.1 86 46.5
Lj7P559T52 Lonicera japonica HOM05D000462 ORTHO05D001280 4.0e-09 65.1 69 50.7
Lalb_Chr18g0057831 Lupinus albus HOM05D000462 ORTHO05D001280 4.0e-09 65.1 84 44.0
Sp6g26590 Schrenkiella parvula HOM05D000462 ORTHO05D001280 5.3e-09 64.7 86 46.5
ATR0829G124 Amborella trichopoda HOM05D000462 ORTHO05D001280 9.0e-09 63.9 72 51.4
Cfa003691 Carpinus fangiana HOM05D000462 ORTHO05D001280 1.5e-08 63.2 69 49.3
Lalb_Chr15g0088621 Lupinus albus HOM05D000462 ORTHO05D001280 2.0e-08 62.8 84 44.0
Glyma.10G088400 Glycine max HOM05D000462 ORTHO05D001280 2.6e-08 62.4 69 47.8
Glyma.15G275300 Glycine max HOM05D000462 ORTHO05D001280 2.6e-08 62.4 69 47.8
RcHm_v2.0_Chr1g0342641 Rosa chinensis HOM05D000462 ORTHO05D001280 3.4e-08 62.0 69 49.3
RcHm_v2.0_Chr5g0045131 Rosa chinensis HOM05D000462 ORTHO05D001280 4.5e-08 61.6 69 49.3
Haze_15796 Corylus avellana HOM05D000462 ORTHO05D001280 5.8e-08 61.2 69 46.4
Lj6g0014844 Lotus japonicus HOM05D000462 ORTHO05D001280 5.8e-08 61.2 84 41.7
TPR.G17489 Trifolium pratense HOM05D000462 ORTHO05D001280 5.8e-08 61.2 84 42.9
TAR629G2982 Trochodendron aralioides HOM05D000462 ORTHO05D001280 1.7e-07 59.7 78 42.3
Ca_00792_v3 Cicer arietinum L. HOM05D000462 ORTHO05D001280 1.1e-06 57.0 69 46.4
HPP92_015130 Vanilla planifolia HOM05D000462 ORTHO05D001280 5.5e-06 54.7 69 43.5
HPP92_015134 Vanilla planifolia HOM05D000462 ORTHO05D001280 9.3e-06 53.9 69 43.5


User provided reference genes

Program Settings