Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g25280 Coffea canephora HOM05D006120 ORTHO05D007913 7.9e-91 337.0 163 100.0
Cc03_g11750 Coffea canephora HOM05D006120 ORTHO05D007913 2.4e-87 325.5 161 97.5
Nitab4.5_0000471g0040 Nicotiana tabacum HOM05D006120 ORTHO05D007913 1.4e-68 263.1 161 75.2
PGSC0003DMG400016589 Solanum tuberosum HOM05D006120 ORTHO05D007913 1.4e-68 263.1 161 75.8
Sopen04g023470 Solanum pennellii HOM05D006120 ORTHO05D007913 3.2e-68 261.9 161 75.2
CAN.G276.3 Capsicum annuum HOM05D006120 ORTHO05D007913 7.2e-68 260.8 161 75.2
Peaxi162Scf00323g00517 Petunia axillaris HOM05D006120 ORTHO05D007913 7.2e-68 260.8 161 75.2
Solyc04g053120.3 Solanum lycopersicum HOM05D006120 ORTHO05D007913 7.2e-68 260.8 161 75.2
Lj4C877G13 Lonicera japonica HOM05D006120 ORTHO05D007913 2.1e-67 259.2 161 75.2
Migut.L00074 Erythranthe guttata HOM05D006120 ORTHO05D007913 3.6e-67 258.5 160 75.0
CSS0019172 Camellia sinensis var. sinensis HOM05D006120 ORTHO05D007913 1.0e-66 256.9 156 77.6
CSS0049107 Camellia sinensis var. sinensis HOM05D006120 ORTHO05D007913 1.0e-66 256.9 156 77.6
Sabra07G0068400 Salix brachista HOM05D006120 ORTHO05D007913 2.3e-66 255.8 155 76.8
unitig_88.g27738 Utricularia gibba HOM05D006120 ORTHO05D007913 2.3e-66 255.8 163 73.0
DCAR_010077 Daucus carota HOM05D006120 ORTHO05D007913 3.9e-66 255.0 161 72.7
ECA238G0742 Erigeron canadensis HOM05D006120 ORTHO05D007913 6.7e-66 254.2 161 73.9
MD15G1333300 Malus domestica HOM05D006120 ORTHO05D007913 6.7e-66 254.2 161 75.2
CiPaw.04G092000 Carya illinoinensis HOM05D006120 ORTHO05D007913 8.8e-66 253.8 161 75.8
QL06p032201 Quercus lobata HOM05D006120 ORTHO05D007913 1.1e-65 253.4 162 73.5
MSTRG.15748 Avicennia marina HOM05D006120 ORTHO05D007913 1.5e-65 253.1 167 74.3
Actinidia05860 Actinidia chinensis HOM05D006120 ORTHO05D007913 2.0e-65 252.7 161 77.0
Haze_25037 Corylus avellana HOM05D006120 ORTHO05D007913 2.0e-65 252.7 161 73.3
FvH4_1g22230 Fragaria vesca HOM05D006120 ORTHO05D007913 2.0e-65 252.7 161 74.5
Prupe.6G173200 Prunus persica HOM05D006120 ORTHO05D007913 2.0e-65 252.7 161 75.2
Atru.chr4.351 Acer truncatum HOM05D006120 ORTHO05D007913 2.5e-65 252.3 160 75.0
ClCG02G013390 Citrullus lanatus HOM05D006120 ORTHO05D007913 4.3e-65 251.5 156 75.0
Potri.007G081400 Populus trichocarpa HOM05D006120 ORTHO05D007913 4.3e-65 251.5 161 74.5
FAN19G1919 Fragaria x ananassa HOM05D006120 ORTHO05D007913 7.4e-65 250.8 160 74.4
RcHm_v2.0_Chr2g0116371 Rosa chinensis HOM05D006120 ORTHO05D007913 7.4e-65 250.8 161 73.3
TWI53G1580 Tripterygium wilfordii HOM05D006120 ORTHO05D007913 7.4e-65 250.8 161 72.0
FAN23G0349 Fragaria x ananassa HOM05D006120 ORTHO05D007913 9.7e-65 250.4 161 73.9
HanXRQChr15g0484401 Helianthus annuus HOM05D006120 ORTHO05D007913 9.7e-65 250.4 161 73.3
Hma1.2p1_0375F.1_g138700 Hydrangea macrophylla HOM05D006120 ORTHO05D007913 9.7e-65 250.4 161 73.9
Rhsim10G0151000 Rhododendron simsii HOM05D006120 ORTHO05D007913 9.7e-65 250.4 161 77.0
GSVIVG01022223001 Vitis vinifera HOM05D006120 ORTHO05D007913 9.7e-65 250.4 161 72.0
SalBow5G3003 Salvia bowleyana HOM05D006120 ORTHO05D007913 1.3e-64 250.0 161 72.7
FAN28G2353 Fragaria x ananassa HOM05D006120 ORTHO05D007913 2.2e-64 249.2 160 73.8
CANSAT01G3221 Cannabis sativa HOM05D006120 ORTHO05D007913 2.8e-64 248.8 161 73.3
Ciclev10025236m.g Citrus clementina HOM05D006120 ORTHO05D007913 4.8e-64 248.1 161 73.3
Thecc.01G112500 Theobroma cacao HOM05D006120 ORTHO05D007913 1.4e-63 246.5 161 70.2
AUR62003308 Chenopodium quinoa HOM05D006120 ORTHO05D007913 3.1e-63 245.4 161 71.4
AUR62016277 Chenopodium quinoa HOM05D006120 ORTHO05D007913 4.1e-63 245.0 161 71.4
arahy.Tifrunner.gnm1.ann1.AFE07A Arachis hypogaea HOM05D006120 ORTHO05D007913 1.2e-62 243.4 154 74.0
Manes.12G142500 Manihot esculenta HOM05D006120 ORTHO05D007913 1.2e-62 243.4 163 67.5
arahy.Tifrunner.gnm1.ann1.Y3LRN9 Arachis hypogaea HOM05D006120 ORTHO05D007913 1.5e-62 243.0 154 74.0
Aqoxy6G00482 Aquilegia oxysepala HOM05D006120 ORTHO05D007913 2.6e-62 242.3 163 69.3
SalBow5G0625 Salvia bowleyana HOM05D006120 ORTHO05D007913 2.6e-62 242.3 154 73.4
Duzib147G0722 Durio zibethinus HOM05D006120 ORTHO05D007913 4.5e-62 241.5 161 72.0
Lsat_1_v5_gn_2_67361 Lactuca sativa HOM05D006120 ORTHO05D007913 4.5e-62 241.5 157 73.2
arahy.Tifrunner.gnm1.ann1.UD5YJS Arachis hypogaea HOM05D006120 ORTHO05D007913 5.9e-62 241.1 154 73.4
Sed0002401 Sechium edule HOM05D006120 ORTHO05D007913 7.7e-62 240.7 161 70.2
Gohir.D03G045900 Gossypium hirsutum HOM05D006120 ORTHO05D007913 1.0e-61 240.4 159 71.7
Gorai.003G047100 Gossypium raimondii HOM05D006120 ORTHO05D007913 1.0e-61 240.4 159 71.7
CsaV3_2G017550 Cucumis sativus L. HOM05D006120 ORTHO05D007913 1.3e-61 240.0 161 69.6
Glyma.06G146400 Glycine max HOM05D006120 ORTHO05D007913 1.3e-61 240.0 161 70.8
TAR628G0801 Trochodendron aralioides HOM05D006120 ORTHO05D007913 1.3e-61 240.0 161 70.8
Medtr3g094840 Medicago truncatula HOM05D006120 ORTHO05D007913 1.7e-61 239.6 156 71.8
Lalb_Chr08g0238881 Lupinus albus HOM05D006120 ORTHO05D007913 2.2e-61 239.2 161 70.2
Ca_16892_v3 Cicer arietinum L. HOM05D006120 ORTHO05D007913 2.9e-61 238.8 163 69.3
MELO3C020949.2 Cucumis melo HOM05D006120 ORTHO05D007913 6.5e-61 237.7 156 70.5
Glyma.04G219500 Glycine max HOM05D006120 ORTHO05D007913 6.5e-61 237.7 161 70.8
TPR.G23750 Trifolium pratense HOM05D006120 ORTHO05D007913 1.9e-60 236.1 156 70.5
Phvul.009G139500 Phaseolus vulgaris HOM05D006120 ORTHO05D007913 2.5e-60 235.7 161 70.2
BcaB04g19998 Brassica carinata HOM05D006120 ORTHO05D007913 4.2e-60 235.0 161 68.9
C09p10300 Brassica napus HOM05D006120 ORTHO05D007913 5.5e-60 234.6 161 68.9
PGR004G1464 Punica granatum HOM05D006120 ORTHO05D007913 5.5e-60 234.6 161 68.9
BcaC04g23275 Brassica carinata HOM05D006120 ORTHO05D007913 7.2e-60 234.2 161 70.2
A09p08880 Brassica napus HOM05D006120 ORTHO05D007913 7.2e-60 234.2 161 68.3
BolC9t53930H Brassica oleracea HOM05D006120 ORTHO05D007913 7.2e-60 234.2 161 70.2
BraA09t36539Z Brassica rapa HOM05D006120 ORTHO05D007913 1.2e-59 233.4 161 67.7
Nn1g05190 Nelumbo nucifera HOM05D006120 ORTHO05D007913 1.2e-59 233.4 161 67.7
Eucgr.I00325 Eucalyptus grandis HOM05D006120 ORTHO05D007913 2.7e-59 232.3 163 68.1
Carub.0008s2569 Capsella rubella HOM05D006120 ORTHO05D007913 4.7e-59 231.5 161 68.3
Lj1g0008968 Lotus japonicus HOM05D006120 ORTHO05D007913 4.7e-59 231.5 161 65.8
AT5G64860 Arabidopsis thaliana HOM05D006120 ORTHO05D007913 6.1e-59 231.1 161 67.7
Sp2g27940 Schrenkiella parvula HOM05D006120 ORTHO05D007913 6.1e-59 231.1 161 68.3
CARHR278870 Cardamine hirsuta HOM05D006120 ORTHO05D007913 1.4e-58 229.9 161 67.7
Thhalv10003902m.g Eutrema salsugineum HOM05D006120 ORTHO05D007913 5.1e-58 228.0 161 67.1
Os07g0627000 Oryza sativa ssp. japonica HOM05D006120 ORTHO05D007913 1.5e-57 226.5 161 66.5
Hund19657 Selenicereus undatus HOM05D006120 ORTHO05D007913 2.0e-57 226.1 161 66.5
Zm00001eb328070 Zea mays HOM05D006120 ORTHO05D007913 2.2e-56 222.6 159 66.0
THA.LOC104818477 Tarenaya hassleriana HOM05D006120 ORTHO05D007913 2.8e-56 222.2 163 65.0
CDE11G1197 Ceratophyllum demersum HOM05D006120 ORTHO05D007913 3.7e-56 221.9 161 67.1
MBI05_g43693_MAGBIO Magnolia biondii HOM05D006120 ORTHO05D007913 4.8e-56 221.5 171 63.7
Psat5g065400 Pisum sativum HOM05D006120 ORTHO05D007913 6.3e-56 221.1 145 69.7
ATR0564G344 Amborella trichopoda HOM05D006120 ORTHO05D007913 8.2e-56 220.7 160 65.0
HPP92_016849 Vanilla planifolia HOM05D006120 ORTHO05D007913 1.8e-55 219.5 154 68.8
CDE09G0932 Ceratophyllum demersum HOM05D006120 ORTHO05D007913 5.3e-55 218.0 161 64.6
SGA_v2.0_scaffold34G13619 Striga asiatica HOM05D006120 ORTHO05D007913 2.6e-54 215.7 130 73.8
Aa31LG1G17070 Aethionema arabicum HOM05D006120 ORTHO05D007913 5.9e-54 214.5 164 64.0
vmacro12904 Vaccinium macrocarpon HOM05D006120 ORTHO05D007913 4.2e-52 208.4 163 67.5
Hma1.2p1_0375F.1_g138730 Hydrangea macrophylla HOM05D006120 ORTHO05D007913 1.2e-51 206.8 126 78.6
AagrBONN_evm.TU.Sc2ySwM_362.2612 Anthoceros agrestis HOM05D006120 ORTHO05D007913 3.6e-51 205.3 160 61.2
COL.COLO4_11015 Corchorus olitorius HOM05D006120 ORTHO05D007913 8.0e-51 204.1 161 63.4
EL10Ac6g14753 Beta vulgaris HOM05D006120 ORTHO05D007913 3.0e-50 202.2 161 59.6
Nn5g28915 Nelumbo nucifera HOM05D006120 ORTHO05D007913 6.3e-48 194.5 126 75.4
Pp3c20_17800 Physcomitrium patens HOM05D006120 ORTHO05D007913 3.1e-47 192.2 159 57.9
SMO164G0070 Selaginella moellendorffii HOM05D006120 ORTHO05D007913 3.1e-47 192.2 160 56.2
Mapoly0007s0077 Marchantia polymorpha HOM05D006120 ORTHO05D007913 2.0e-46 189.5 160 56.9
SEGI_23685 Sequoiadendron giganteum HOM05D006120 ORTHO05D007913 6.5e-45 184.5 121 74.4
CBR_g16839 Chara braunii HOM05D006120 ORTHO05D007913 1.2e-43 180.3 165 52.1
Pp3c8_6000 Physcomitrium patens HOM05D006120 ORTHO05D007913 1.0e-42 177.2 159 53.5
Pp3c6_28760 Physcomitrium patens HOM05D006120 ORTHO05D007913 1.8e-42 176.4 159 52.8
CBR_g31505 Chara braunii HOM05D006120 ORTHO05D007913 6.8e-42 174.5 162 51.9
MCO01G332 Micromonas commoda HOM05D006120 ORTHO05D007913 6.8e-34 147.9 160 42.5
Cre03.g181500 Chlamydomonas reinhardtii HOM05D006120 ORTHO05D007913 9.1e-31 137.5 160 44.4
PRCOL_00006523 Prasinoderma coloniale HOM05D006120 ORTHO05D007913 1.6e-30 136.7 162 45.1
PSO675G5066 Papaver somniferum HOM05D006120 ORTHO05D007913 8.0e-27 124.4 80 68.8
Ah.02g125980 Amaranthus hybridus HOM05D006120 ORTHO05D007913 8.9e-26 120.9 111 55.9
BolC2t12429H Brassica oleracea HOM05D006120 ORTHO05D042482 2.0e-22 109.8 93 58.1
Gohir.A02G135000 Gossypium hirsutum HOM05D006120 ORTHO05D007913 4.5e-22 108.6 60 83.3
C02p63630 Brassica napus HOM05D006120 ORTHO05D042482 3.7e-16 89.0 83 54.2


User provided reference genes

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