Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g24210 Coffea canephora HOM05D003115 ORTHO05D003595 0.0e+00 3191.4 1630 100.0
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 0.0e+00 1930.2 1638 61.3
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 0.0e+00 1815.4 1643 57.5
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 0.0e+00 1810.8 1643 57.5
Actinidia35847 Actinidia chinensis HOM05D003115 ORTHO05D003595 0.0e+00 1800.0 1622 57.3
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 0.0e+00 1792.3 1649 56.8
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 0.0e+00 1790.0 1649 56.6
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 0.0e+00 1753.0 1669 55.6
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 0.0e+00 1716.0 1675 53.3
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 0.0e+00 1707.2 1653 54.4
Peaxi162Scf00047g00136 Petunia axillaris HOM05D003115 ORTHO05D003595 0.0e+00 1706.0 1678 54.0
Oeu002918.1 Olea europaea HOM05D003115 ORTHO05D003595 0.0e+00 1703.3 1652 55.3
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 0.0e+00 1684.1 1657 54.0
Rhsim09G0059200 Rhododendron simsii HOM05D003115 ORTHO05D003595 0.0e+00 1652.9 1799 49.7
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 0.0e+00 1647.9 1653 53.3
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 0.0e+00 1641.3 1649 53.1
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 0.0e+00 1640.9 1645 52.8
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 0.0e+00 1632.8 1649 52.6
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 0.0e+00 1627.8 1652 52.2
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 0.0e+00 1625.5 1647 52.3
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 0.0e+00 1623.6 1673 51.7
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 0.0e+00 1619.8 1678 51.7
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 0.0e+00 1617.1 1657 52.7
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 0.0e+00 1614.7 1649 52.8
Prupe.3G074200 Prunus persica HOM05D003115 ORTHO05D003595 0.0e+00 1605.1 1676 51.3
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 0.0e+00 1602.8 1643 52.0
MBI17_g03746_MAGBIO Magnolia biondii HOM05D003115 ORTHO05D003595 0.0e+00 1599.7 1666 51.9
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 0.0e+00 1598.2 1634 52.1
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 0.0e+00 1592.4 1653 51.8
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 0.0e+00 1577.8 1638 51.3
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 0.0e+00 1576.2 1654 50.5
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 0.0e+00 1574.7 1622 51.5
Migut.B01882 Erythranthe guttata HOM05D003115 ORTHO05D003595 0.0e+00 1572.0 1634 51.4
MD17G1201300 Malus domestica HOM05D003115 ORTHO05D003595 0.0e+00 1567.0 1654 50.8
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 0.0e+00 1554.3 1660 51.0
Potri.001G318800 Populus trichocarpa HOM05D003115 ORTHO05D003595 0.0e+00 1551.2 1642 50.9
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 0.0e+00 1549.3 1624 50.6
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 0.0e+00 1541.9 1654 50.4
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 0.0e+00 1532.3 1658 49.7
Sc25g0005820 Simmondsia chinensis HOM05D003115 ORTHO05D003595 0.0e+00 1525.4 1659 49.4
Sabra16G0201800 Salix brachista HOM05D003115 ORTHO05D003595 0.0e+00 1521.1 1674 49.5
Gohir.D10G137700 Gossypium hirsutum HOM05D003115 ORTHO05D003595 0.0e+00 1506.5 1553 51.5
ECA233G4989 Erigeron canadensis HOM05D003115 ORTHO05D003595 0.0e+00 1502.3 1629 49.8
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 0.0e+00 1493.0 1653 49.7
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 0.0e+00 1478.0 1663 48.8
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 0.0e+00 1466.8 1577 50.9
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 0.0e+00 1463.7 1706 47.1
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 0.0e+00 1461.4 1650 48.7
Lj6C385T7 Lonicera japonica HOM05D003115 ORTHO05D003595 0.0e+00 1460.7 1586 50.6
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 0.0e+00 1458.4 1668 48.6
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 0.0e+00 1458.0 1677 48.4
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 0.0e+00 1449.1 1667 48.1
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 0.0e+00 1442.6 1686 47.8
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 0.0e+00 1429.8 1657 47.7
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 0.0e+00 1429.5 1649 47.7
EL10Ac3g07463 Beta vulgaris HOM05D003115 ORTHO05D003595 0.0e+00 1419.8 1658 46.7
PSO210G2420 Papaver somniferum HOM05D003115 ORTHO05D003595 0.0e+00 1419.4 1657 46.5
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 0.0e+00 1413.7 1659 47.2
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 0.0e+00 1411.7 1663 47.0
Atru.chr4.1597 Acer truncatum HOM05D003115 ORTHO05D003595 0.0e+00 1406.3 1649 47.9
PSO832G1670 Papaver somniferum HOM05D003115 ORTHO05D003595 0.0e+00 1404.8 1663 45.9
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 0.0e+00 1403.7 1678 46.7
Medtr3g083970 Medicago truncatula HOM05D003115 ORTHO05D003595 0.0e+00 1384.4 1660 45.9
Hund11640 Selenicereus undatus HOM05D003115 ORTHO05D003595 0.0e+00 1384.4 1546 49.3
AUR62018566 Chenopodium quinoa HOM05D003115 ORTHO05D003595 0.0e+00 1382.1 1666 46.5
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 0.0e+00 1380.9 1656 46.1
Ca_07922_v3 Cicer arietinum L. HOM05D003115 ORTHO05D003595 0.0e+00 1380.5 1647 46.4
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 0.0e+00 1369.8 1638 46.8
Ah.04g149340 Amaranthus hybridus HOM05D003115 ORTHO05D003595 0.0e+00 1355.5 1618 45.7
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 0.0e+00 1343.9 1659 45.6
arahy.Tifrunner.gnm1.ann1.QS081X Arachis hypogaea HOM05D003115 ORTHO05D003595 0.0e+00 1314.3 1707 44.3
arahy.Tifrunner.gnm1.ann1.01WSAY Arachis hypogaea HOM05D003115 ORTHO05D003595 0.0e+00 1313.5 1693 44.7
Haze_07640 Corylus avellana HOM05D003115 ORTHO05D003595 0.0e+00 1265.4 1355 50.5
ATR0665G483 Amborella trichopoda HOM05D003115 ORTHO05D003595 0.0e+00 1255.7 1728 42.1
AUR62020852 Chenopodium quinoa HOM05D003115 ORTHO05D003595 0.0e+00 1237.6 1969 38.6
BcaNung01550 Brassica carinata HOM05D003115 ORTHO05D003595 0.0e+00 1222.2 1668 43.0
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 0.0e+00 1215.7 1644 42.8
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 0.0e+00 1206.8 1637 43.3
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 0.0e+00 1201.8 1657 42.7
Eucgr.H00031 Eucalyptus grandis HOM05D003115 ORTHO05D003595 0.0e+00 1192.2 1504 44.7
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 0.0e+00 1176.8 1642 42.6
Zm00001eb121880 Zea mays HOM05D003115 ORTHO05D003595 0.0e+00 1174.5 1688 40.4
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 0.0e+00 1174.1 1669 42.4
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 0.0e+00 1173.3 1641 42.5
Carub.0005s0720 Capsella rubella HOM05D003115 ORTHO05D003595 0.0e+00 1169.1 1647 41.7
Nitab4.5_0000697g0090 Nicotiana tabacum HOM05D003115 ORTHO05D003595 0.0e+00 1165.6 1507 45.1
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 0.0e+00 1147.1 1651 42.0
CARHR238880 Cardamine hirsuta HOM05D003115 ORTHO05D003595 0.0e+00 1145.2 1656 41.7
A03p60500 Brassica napus HOM05D003115 ORTHO05D003595 0.0e+00 1134.8 1649 41.7
BcaNung02730 Brassica carinata HOM05D003115 ORTHO05D003595 0.0e+00 1134.4 1646 41.9
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 0.0e+00 1123.6 1639 40.8
C07p58370 Brassica napus HOM05D003115 ORTHO05D003595 0.0e+00 1121.3 1651 41.6
TPR.G14704 Trifolium pratense HOM05D003115 ORTHO05D003595 0.0e+00 1120.5 1454 44.0
BolC7t46291H Brassica oleracea HOM05D003115 ORTHO05D003595 0.0e+00 1114.4 1651 41.4
AL1G38530 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 0.0e+00 1109.0 1621 41.1
Thhalv10009353m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 0.0e+00 1104.7 1632 41.4
Lalb_Chr23g0269101 Lupinus albus HOM05D003115 ORTHO05D003595 0.0e+00 1096.3 1457 43.6
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 0.0e+00 1095.1 1645 40.1
CARHR024920 Cardamine hirsuta HOM05D003115 ORTHO05D003595 0.0e+00 1078.9 1637 40.6
Oeu043445.1 Olea europaea HOM05D003115 ORTHO05D003595 1.3e-302 1043.9 1039 53.5
Carub.0001s2398 Capsella rubella HOM05D003115 ORTHO05D003595 3.1e-296 1022.7 1544 40.2
Cc00_g09590 Coffea canephora HOM05D003115 ORTHO05D003595 4.7e-284 982.2 643 82.3
Hma1.2p1_0039F.1_g024560 Hydrangea macrophylla HOM05D003115 ORTHO05D003595 2.6e-282 976.5 1127 47.2
Pp3c3_18970 Physcomitrium patens HOM05D003115 ORTHO05D003595 2.2e-249 867.1 1817 32.3
HPP92_007257 Vanilla planifolia HOM05D003115 ORTHO05D003595 8.1e-228 795.4 978 44.0
unitig_578.g16273 Utricularia gibba HOM05D003115 ORTHO05D003595 8.7e-222 775.4 1626 33.4
Mapoly0054s0075 Marchantia polymorpha HOM05D003115 ORTHO05D003595 5.6e-221 772.7 1828 31.0
CDE07G0754 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 6.0e-207 726.1 1163 39.1
AagrBONN_evm.TU.Sc2ySwM_228.2833 Anthoceros agrestis HOM05D003115 ORTHO05D003595 2.1e-191 674.5 1826 29.6
Cc00_g35730 Coffea canephora HOM05D003115 ORTHO05D003595 4.7e-167 593.6 323 95.4
SEGI_06154 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 1.1e-160 572.4 1175 31.9
C05p23810 Brassica napus HOM05D003115 ORTHO05D003595 6.7e-158 563.1 1286 31.6
SMO164G0231 Selaginella moellendorffii HOM05D003115 ORTHO05D003595 2.5e-152 544.7 1535 28.3
A09p40420 Brassica napus HOM05D003115 ORTHO05D003595 2.3e-150 538.1 713 43.3
BraA09t39538Z Brassica rapa HOM05D003115 ORTHO05D003595 2.3e-150 538.1 713 43.3
Cpa.g.sc83.40 Carica papaya HOM05D003115 ORTHO05D003595 3.5e-138 497.7 485 53.4
HPP92_007263 Vanilla planifolia HOM05D003115 ORTHO05D003595 3.8e-137 494.2 595 45.0
Oeu043446.1 Olea europaea HOM05D003115 ORTHO05D003595 1.2e-119 436.0 382 58.1
BcaC05g26358 Brassica carinata HOM05D003115 ORTHO05D003595 4.7e-111 407.5 647 40.2
CANSAT78G0886 Cannabis sativa HOM05D003115 ORTHO05D003595 1.5e-104 386.0 374 51.6
Cpa.g.sc83.36 Carica papaya HOM05D003115 ORTHO05D003595 1.2e-101 376.3 541 40.5
BolC5t31100H Brassica oleracea HOM05D003115 ORTHO05D003595 1.3e-97 362.8 923 30.3
RcHm_v2.0_Chr2g0136151 Rosa chinensis HOM05D003115 ORTHO05D003595 6.7e-89 334.0 715 33.1
CANSAT78G1406 Cannabis sativa HOM05D003115 ORTHO05D003595 3.2e-83 315.1 368 48.4
SEGI_04472 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 1.0e-65 256.9 400 36.8
Cc00_g24200 Coffea canephora HOM05D003115 ORTHO05D003595 8.8e-57 227.3 123 90.2
CiPaw.14G076400 Carya illinoinensis HOM05D003115 ORTHO05D003595 2.0e-56 226.1 305 42.0
SEGI_12321 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 2.0e-56 226.1 210 56.2
Lalb_Chr23g0269091 Lupinus albus HOM05D003115 ORTHO05D003595 2.2e-55 222.6 214 53.3
BolC5t31099H Brassica oleracea HOM05D003115 ORTHO05D003595 4.8e-55 221.5 313 40.9
HPP92_007267 Vanilla planifolia HOM05D003115 ORTHO05D003595 1.5e-48 199.9 315 38.7
CDE07G1385 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 7.7e-45 187.6 214 43.9
Rhsim07G0171200 Rhododendron simsii HOM05D003115 ORTHO05D003595 1.2e-40 173.7 197 49.2
Eucgr.H00030 Eucalyptus grandis HOM05D003115 ORTHO05D003595 2.4e-38 166.0 120 67.5
Cpa.g.c46004 Carica papaya HOM05D003115 ORTHO05D003595 2.7e-37 162.5 134 60.4
BcaC05g26357 Brassica carinata HOM05D003115 ORTHO05D003595 8.0e-34 151.0 167 44.9
PRCOL_00001334 Prasinoderma coloniale HOM05D003115 ORTHO05D003595 8.0e-34 151.0 1818 20.8
Cre10.g461000 Chlamydomonas reinhardtii HOM05D003115 ORTHO05D003595 4.4e-32 145.2 213 39.4
C05p23980 Brassica napus HOM05D003115 ORTHO05D003595 9.8e-32 144.1 170 48.8
BolC5t31132H Brassica oleracea HOM05D003115 ORTHO05D003595 9.8e-32 144.1 170 48.8
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 4.8e-31 141.7 121 58.7
Rhsim07G0171100 Rhododendron simsii HOM05D003115 ORTHO05D003595 2.4e-30 139.4 193 39.4
Cfa010533 Carpinus fangiana HOM05D003115 ORTHO05D003595 4.1e-30 138.7 195 38.5
Cpa.g.sc83.35 Carica papaya HOM05D003115 ORTHO05D003595 1.6e-29 136.7 104 67.3
Haze_07641 Corylus avellana HOM05D003115 ORTHO05D003595 2.7e-29 136.0 96 71.9
Actinidia30876 Actinidia chinensis HOM05D003115 ORTHO05D003595 9.5e-27 127.5 131 50.4
AL3G41550 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 3.6e-26 125.6 204 40.2
BolC5t31125H Brassica oleracea HOM05D003115 ORTHO05D003595 1.4e-25 123.6 132 49.2
Rhsim07G0171500 Rhododendron simsii HOM05D003115 ORTHO05D003595 5.2e-25 121.7 222 33.8
Hund29080 Selenicereus undatus HOM05D003115 ORTHO05D003595 9.8e-24 117.5 79 64.6
Hund29082 Selenicereus undatus HOM05D003115 ORTHO05D003595 9.8e-24 117.5 79 64.6
C05p24020 Brassica napus HOM05D003115 ORTHO05D003595 2.8e-23 115.9 125 48.8
BraA09t39536Z Brassica rapa HOM05D003115 ORTHO05D003595 1.4e-22 113.6 177 40.1
A09p40400 Brassica napus HOM05D003115 ORTHO05D003595 3.2e-22 112.5 181 39.2
TPR.G860 Trifolium pratense HOM05D003115 ORTHO05D003595 9.2e-22 110.9 92 60.9
CANSAT78G1701 Cannabis sativa HOM05D003115 ORTHO05D003595 1.3e-20 107.1 84 58.3
MCO13G565 Micromonas commoda HOM05D003115 ORTHO05D003595 8.0e-18 97.8 163 34.4
HPP92_007258 Vanilla planifolia HOM05D003115 ORTHO05D003595 3.4e-16 92.4 69 69.6
TPR.G14701 Trifolium pratense HOM05D003115 ORTHO05D003595 3.7e-15 89.0 69 66.7
Zm00001eb092010 Zea mays HOM05D003115 ORTHO05D029342 5.4e-14 85.1 157 31.8
Oeu049761.1 Olea europaea HOM05D003115 ORTHO05D003595 7.0e-14 84.7 102 39.2
Zm00001eb154910 Zea mays HOM05D003115 ORTHO05D029342 9.2e-14 84.3 157 31.8
Carub.0001s2400 Capsella rubella HOM05D003115 ORTHO05D003595 3.5e-13 82.4 69 65.2
A09p40410 Brassica napus HOM05D003115 ORTHO05D019968 6.6e-12 78.2 70 57.1
BraA09t39537Z Brassica rapa HOM05D003115 ORTHO05D019968 6.6e-12 78.2 70 57.1
Hma1.2p1_0039F.1_g024570 Hydrangea macrophylla HOM05D003115 ORTHO05D003595 8.6e-12 77.8 50 66.0
Cfa025075 Carpinus fangiana HOM05D003115 ORTHO05D003595 7.3e-11 74.7 433 23.3
BolC5t31124H Brassica oleracea HOM05D003115 ORTHO05D019968 9.5e-11 74.3 71 57.7
SEGI_28450 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 9.5e-11 74.3 99 41.4
C05p24030 Brassica napus HOM05D003115 ORTHO05D019968 1.6e-10 73.6 171 33.9
PGSC0003DMG400007745 Solanum tuberosum HOM05D003115 ORTHO05D003595 2.3e-09 69.7 56 60.7
Actinidia30874 Actinidia chinensis HOM05D003115 ORTHO05D003595 6.8e-09 68.2 55 56.4
Actinidia36365 Actinidia chinensis HOM05D003115 ORTHO05D003595 6.8e-09 68.2 71 45.1
Psat4g000280 Pisum sativum HOM05D003115 ORTHO05D003595 2.2e-07 63.2 68 47.1


User provided reference genes

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