Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g24130 Coffea canephora HOM05D004207 ORTHO05D005188 1.6e-48 195.7 95 100.0
Cc00_g13290 Coffea canephora HOM05D004207 ORTHO05D005188 1.2e-38 162.9 89 89.9
Cc06_g19790 Coffea canephora HOM05D004207 ORTHO05D005188 7.2e-36 153.7 92 82.6
Nn7g36827 Nelumbo nucifera HOM05D004207 ORTHO05D005188 3.3e-33 144.8 92 75.0
vmacro07779 Vaccinium macrocarpon HOM05D004207 ORTHO05D005188 1.7e-32 142.5 92 75.0
Potri.006G040400 Populus trichocarpa HOM05D004207 ORTHO05D005188 2.2e-32 142.1 95 70.5
Dinv29109 Davidia involucrata HOM05D004207 ORTHO05D005188 3.7e-32 141.4 95 70.5
Oeu057783.1 Olea europaea HOM05D004207 ORTHO05D005188 3.7e-32 141.4 92 75.0
Cfa019993 Carpinus fangiana HOM05D004207 ORTHO05D000579 1.1e-31 139.8 92 72.8
Nitab4.5_0004588g0010 Nicotiana tabacum HOM05D004207 ORTHO05D005188 1.4e-31 139.4 92 71.7
Oeu021494.1 Olea europaea HOM05D004207 ORTHO05D005188 1.4e-31 139.4 92 75.0
Sabra06G0027300 Salix brachista HOM05D004207 ORTHO05D005188 1.4e-31 139.4 95 68.4
Migut.J01642 Erythranthe guttata HOM05D004207 ORTHO05D005188 2.4e-31 138.7 92 73.9
CiPaw.10G041000 Carya illinoinensis HOM05D004207 ORTHO05D005188 3.1e-31 138.3 92 71.7
TAR072G0001 Trochodendron aralioides HOM05D004207 ORTHO05D005188 4.1e-31 137.9 92 71.7
QL07p011416 Quercus lobata HOM05D004207 ORTHO05D005188 5.3e-31 137.5 92 70.7
SGA_v2.0_scaffold66G22265 Striga asiatica HOM05D004207 ORTHO05D002907 5.3e-31 137.5 92 71.7
Lj6C571T2 Lonicera japonica HOM05D004207 ORTHO05D005188 7.0e-31 137.1 92 71.7
Rhsim03G0036600 Rhododendron simsii HOM05D004207 ORTHO05D005188 9.1e-31 136.7 95 69.5
Sopen10g029060 Solanum pennellii HOM05D004207 ORTHO05D005188 9.1e-31 136.7 92 70.7
SGA_v2.0_scaffold69G23162 Striga asiatica HOM05D004207 ORTHO05D005188 9.1e-31 136.7 92 73.9
Haze_20240 Corylus avellana HOM05D004207 ORTHO05D005188 1.6e-30 136.0 89 73.0
Nitab4.5_0000812g0050 Nicotiana tabacum HOM05D004207 ORTHO05D005188 1.6e-30 136.0 92 69.6
QL06p027270 Quercus lobata HOM05D004207 ORTHO05D005188 1.6e-30 136.0 92 69.6
HanXRQChr14g0437711 Helianthus annuus HOM05D004207 ORTHO05D005188 2.0e-30 135.6 92 70.7
TWI77G0534 Tripterygium wilfordii HOM05D004207 ORTHO05D005188 2.0e-30 135.6 92 68.5
Lj2C402T2 Lonicera japonica HOM05D004207 ORTHO05D005188 2.6e-30 135.2 92 70.7
Solyc10g078400.2 Solanum lycopersicum HOM05D004207 ORTHO05D005188 2.6e-30 135.2 92 70.7
CSS0037507 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 3.5e-30 134.8 92 71.7
CSS0037639 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 3.5e-30 134.8 92 71.7
Lj6A558G55 Lonicera japonica HOM05D004207 ORTHO05D005188 3.5e-30 134.8 92 70.7
TAR633G0823 Trochodendron aralioides HOM05D004207 ORTHO05D005188 3.5e-30 134.8 93 73.1
Cpa.g.sc92.81 Carica papaya HOM05D004207 ORTHO05D005188 4.5e-30 134.4 92 66.3
Aqoxy1G00399 Aquilegia oxysepala HOM05D004207 ORTHO05D005188 7.7e-30 133.7 92 67.4
CAN.G960.63 Capsicum annuum HOM05D004207 ORTHO05D005188 1.0e-29 133.3 92 67.4
Lj2A402G44 Lonicera japonica HOM05D004207 ORTHO05D005188 1.0e-29 133.3 92 69.6
Manes.08G060400 Manihot esculenta HOM05D004207 ORTHO05D005188 1.0e-29 133.3 95 67.4
Potri.016G035600 Populus trichocarpa HOM05D004207 ORTHO05D005188 1.0e-29 133.3 95 65.3
Actinidia37879 Actinidia chinensis HOM05D004207 ORTHO05D005188 1.3e-29 132.9 92 69.6
CANSAT64G1578 Cannabis sativa HOM05D004207 ORTHO05D005188 1.3e-29 132.9 90 72.2
Dinv21465 Davidia involucrata HOM05D004207 ORTHO05D005188 1.3e-29 132.9 92 68.5
PGSC0003DMG400008376 Solanum tuberosum HOM05D004207 ORTHO05D005188 1.7e-29 132.5 95 68.4
MBI13_g09213_MAGBIO Magnolia biondii HOM05D004207 ORTHO05D005188 2.2e-29 132.1 88 70.5
Actinidia17959 Actinidia chinensis HOM05D004207 ORTHO05D005188 2.9e-29 131.7 92 69.6
MSTRG.19794 Avicennia marina HOM05D004207 ORTHO05D005188 3.8e-29 131.3 93 71.0
MELO3C019096.2 Cucumis melo HOM05D004207 ORTHO05D005188 3.8e-29 131.3 92 68.5
SalBow6G6231 Salvia bowleyana HOM05D004207 ORTHO05D005188 3.8e-29 131.3 91 71.4
Prupe.2G101700 Prunus persica HOM05D004207 ORTHO05D005188 5.0e-29 131.0 92 69.6
CSS0026158 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 6.5e-29 130.6 92 66.3
CSS0030520 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 6.5e-29 130.6 92 66.3
Glyma.02G162900 Glycine max HOM05D004207 ORTHO05D005188 8.5e-29 130.2 92 66.3
Thecc.05G127200 Theobroma cacao HOM05D004207 ORTHO05D005188 8.5e-29 130.2 95 64.2
AUR62030295 Chenopodium quinoa HOM05D004207 ORTHO05D005188 1.1e-28 129.8 89 66.3
Atru.chr1.1398 Acer truncatum HOM05D004207 ORTHO05D005188 1.5e-28 129.4 93 68.8
ClCG04G005620 Citrullus lanatus HOM05D004207 ORTHO05D005188 1.5e-28 129.4 92 67.4
COL.COLO4_07075 Corchorus olitorius HOM05D004207 ORTHO05D005188 1.5e-28 129.4 95 63.2
Medtr8g106395 Medicago truncatula HOM05D004207 ORTHO05D005188 1.5e-28 129.4 92 64.1
Duzib093G1083 Durio zibethinus HOM05D004207 ORTHO05D005188 1.9e-28 129.0 95 63.2
Eucgr.K01646 Eucalyptus grandis HOM05D004207 ORTHO05D005188 1.9e-28 129.0 89 66.3
Lsat_1_v5_gn_2_54201 Lactuca sativa HOM05D004207 ORTHO05D005188 1.9e-28 129.0 92 67.4
MD12G1095500 Malus domestica HOM05D004207 ORTHO05D005188 1.9e-28 129.0 92 68.5
Ah.04g150870 Amaranthus hybridus HOM05D000591 ORTHO05D000579 2.5e-28 128.6 92 64.1
Gohir.A02G105901 Gossypium hirsutum HOM05D004207 ORTHO05D005188 2.5e-28 128.6 95 63.2
Lalb_Chr14g0365741 Lupinus albus HOM05D004207 ORTHO05D005188 2.5e-28 128.6 92 66.3
GSVIVG01025744001 Vitis vinifera HOM05D004207 ORTHO05D005188 4.2e-28 127.9 92 68.5
arahy.Tifrunner.gnm1.ann1.1DJ9GZ Arachis hypogaea HOM05D004207 ORTHO05D005188 5.5e-28 127.5 90 67.8
arahy.Tifrunner.gnm1.ann1.I2Z9WV Arachis hypogaea HOM05D004207 ORTHO05D005188 5.5e-28 127.5 90 67.8
PGR142G0266 Punica granatum HOM05D004207 ORTHO05D005188 5.5e-28 127.5 91 69.2
RcHm_v2.0_Chr1g0339511 Rosa chinensis HOM05D004207 ORTHO05D005188 5.5e-28 127.5 92 66.3
ATR0307G046 Amborella trichopoda HOM05D004207 ORTHO05D005188 7.2e-28 127.1 89 66.3
AUR62018367 Chenopodium quinoa HOM05D004207 ORTHO05D005188 7.2e-28 127.1 89 65.2
Psat7g005160 Pisum sativum HOM05D004207 ORTHO05D005188 7.2e-28 127.1 92 63.0
Ciclev10011666m.g Citrus clementina HOM05D004207 ORTHO05D005188 9.4e-28 126.7 84 70.2
ECA238G2339 Erigeron canadensis HOM05D004207 ORTHO05D000645 1.2e-27 126.3 91 68.1
arahy.Tifrunner.gnm1.ann1.6G7KL6 Arachis hypogaea HOM05D004207 ORTHO05D005188 1.6e-27 125.9 93 65.6
Gohir.D03G072800 Gossypium hirsutum HOM05D004207 ORTHO05D005188 1.6e-27 125.9 95 62.1
Gorai.003G087000 Gossypium raimondii HOM05D004207 ORTHO05D005188 1.6e-27 125.9 95 62.1
THA.LOC104803259 Tarenaya hassleriana HOM05D004207 ORTHO05D005188 2.1e-27 125.6 95 63.2
CSS0037189 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 2.7e-27 125.2 89 65.2
VMungo0720G0799 Vigna mungo HOM05D004207 ORTHO05D005188 2.7e-27 125.2 92 63.0
CSS0011177 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 3.6e-27 124.8 89 65.2
CSS0022112 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 3.6e-27 124.8 89 65.2
FvH4_2g10400 Fragaria vesca HOM05D004207 ORTHO05D005188 3.6e-27 124.8 92 66.3
FAN15G2977 Fragaria x ananassa HOM05D004207 ORTHO05D005188 3.6e-27 124.8 92 65.2
FAN24G1611 Fragaria x ananassa HOM05D004207 ORTHO05D005188 3.6e-27 124.8 92 66.3
Hma1.2p1_0007F.1_g005270 Hydrangea macrophylla HOM05D004207 ORTHO05D005188 3.6e-27 124.8 92 64.1
Hund24581 Selenicereus undatus HOM05D004207 ORTHO05D005188 3.6e-27 124.8 92 63.0
arahy.Tifrunner.gnm1.ann1.U0ATL0 Arachis hypogaea HOM05D004207 ORTHO05D005188 4.7e-27 124.4 93 65.6
Ah.13g077190 Amaranthus hybridus HOM05D002757 ORTHO05D003252 6.1e-27 124.0 92 62.0
CSS0007811 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 6.1e-27 124.0 89 65.2
TPR.G5525 Trifolium pratense HOM05D004207 ORTHO05D005188 6.1e-27 124.0 89 64.0
FAN20G2214 Fragaria x ananassa HOM05D004207 ORTHO05D005188 8.0e-27 123.6 92 64.1
CiPaw.09G048900 Carya illinoinensis HOM05D004207 ORTHO05D005188 1.0e-26 123.2 84 67.9
DCAR_020580 Daucus carota HOM05D004207 ORTHO05D005188 1.0e-26 123.2 92 64.1
Prupe.1G554500 Prunus persica HOM05D004207 ORTHO05D005188 1.0e-26 123.2 92 67.4
CsaV3_4G029510 Cucumis sativus L. HOM05D004207 ORTHO05D005188 1.4e-26 122.9 92 65.2
CSS0017049 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 1.8e-26 122.5 89 64.0
Ca_25841_v3 Cicer arietinum L. HOM05D004207 ORTHO05D005188 1.8e-26 122.5 92 63.0
Thhalv10016761m.g Eutrema salsugineum HOM05D004207 ORTHO05D005188 1.8e-26 122.5 95 61.1
CDE02G0307 Ceratophyllum demersum HOM05D004207 ORTHO05D005188 2.3e-26 122.1 92 63.0
EL10Ac3g07257 Beta vulgaris HOM05D004207 ORTHO05D005188 3.0e-26 121.7 89 61.8
PSO339G0215 Papaver somniferum HOM05D004207 ORTHO05D005188 3.0e-26 121.7 91 60.4
THA.LOC104824395 Tarenaya hassleriana HOM05D004207 ORTHO05D005188 3.0e-26 121.7 95 61.1
Glyma.09G026700 Glycine max HOM05D004207 ORTHO05D005188 4.0e-26 121.3 92 65.2
SHI31312 Sapria himalayana HOM05D004207 ORTHO05D005188 4.0e-26 121.3 89 66.3
Sed0024335 Sechium edule HOM05D004207 ORTHO05D005188 4.0e-26 121.3 91 62.6
Carub.0005s2349 Capsella rubella HOM05D004207 ORTHO05D005188 6.7e-26 120.6 92 64.1
AL5G38110 Arabidopsis lyrata HOM05D004207 ORTHO05D005188 8.8e-26 120.2 92 64.1
CARHR136240 Cardamine hirsuta HOM05D004207 ORTHO05D005188 8.8e-26 120.2 96 61.5
PSO384G4208 Papaver somniferum HOM05D004207 ORTHO05D005188 1.2e-25 119.8 91 59.3
Sabra16G0037900 Salix brachista HOM05D004207 ORTHO05D005188 1.2e-25 119.8 95 60.0
Sc13g0001060 Simmondsia chinensis HOM05D004207 ORTHO05D005188 1.2e-25 119.8 92 62.0
BcaC08g44805 Brassica carinata HOM05D004207 ORTHO05D005188 1.5e-25 119.4 86 68.6
C06p23760 Brassica napus HOM05D004207 ORTHO05D005188 1.5e-25 119.4 86 68.6
BolC6t37545H Brassica oleracea HOM05D004207 ORTHO05D005188 1.5e-25 119.4 86 68.6
Sp5g05820 Schrenkiella parvula HOM05D004207 ORTHO05D005188 1.5e-25 119.4 87 66.7
AL4G39120 Arabidopsis lyrata HOM05D004207 ORTHO05D005188 2.0e-25 119.0 95 60.0
FvH4_5g30880 Fragaria vesca HOM05D004207 ORTHO05D005188 2.0e-25 119.0 93 63.4
FAN18G2175 Fragaria x ananassa HOM05D004207 ORTHO05D005188 2.0e-25 119.0 93 63.4
AT3G56750 Arabidopsis thaliana HOM05D004207 ORTHO05D005188 2.6e-25 118.6 92 63.0
BcaB02g07638 Brassica carinata HOM05D004207 ORTHO05D005188 2.6e-25 118.6 87 66.7
Carub.0004s2346 Capsella rubella HOM05D004207 ORTHO05D005188 2.6e-25 118.6 95 57.9
unitig_744.g24179 Utricularia gibba HOM05D004207 ORTHO05D005188 3.3e-25 118.2 92 63.0
Phvul.007G243300 Phaseolus vulgaris HOM05D004207 ORTHO05D005188 4.4e-25 117.9 84 65.5
A07p23050 Brassica napus HOM05D004207 ORTHO05D005188 5.7e-25 117.5 87 66.7
BraA07t29968Z Brassica rapa HOM05D004207 ORTHO05D005188 5.7e-25 117.5 87 66.7
BcaC07g40120 Brassica carinata HOM05D004207 ORTHO05D005188 7.5e-25 117.1 91 63.7
AT2G41150 Arabidopsis thaliana HOM05D004207 ORTHO05D005188 9.7e-25 116.7 95 58.9
BcaC07g39983 Brassica carinata HOM05D004207 ORTHO05D005188 9.7e-25 116.7 87 65.5
BolC8t50815H Brassica oleracea HOM05D004207 ORTHO05D005188 9.7e-25 116.7 87 65.5
BraA09t40412Z Brassica rapa HOM05D004207 ORTHO05D005188 9.7e-25 116.7 87 66.7
C08p31970 Brassica napus HOM05D004207 ORTHO05D005188 1.7e-24 115.9 87 65.5
Aa31LG10G11590 Aethionema arabicum HOM05D004207 ORTHO05D005188 2.2e-24 115.5 92 60.9
Thhalv10006019m.g Eutrema salsugineum HOM05D004207 ORTHO05D005188 2.2e-24 115.5 86 66.3
A05p02060 Brassica napus HOM05D004207 ORTHO05D005188 1.1e-23 113.2 95 58.9
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 2.7e-22 108.6 87 60.9
CARHR159490 Cardamine hirsuta HOM05D004207 ORTHO05D005188 2.7e-22 108.6 82 64.6
BraA05t19202Z Brassica rapa HOM05D004207 ORTHO05D005188 3.5e-22 108.2 95 55.8
SEGI_12806 Sequoiadendron giganteum HOM05D004207 ORTHO05D005188 5.9e-22 107.5 92 56.5
C04p02450 Brassica napus HOM05D004207 ORTHO05D005188 1.7e-21 105.9 95 54.7
BolC4t21890H Brassica oleracea HOM05D004207 ORTHO05D005188 2.2e-21 105.5 95 54.7
BcaC02g12755 Brassica carinata HOM05D004207 ORTHO05D005188 2.9e-21 105.1 95 54.7
Os03g0366700 Oryza sativa ssp. japonica HOM05D004207 ORTHO05D005188 6.5e-21 104.0 88 59.1
Zm00001eb017860 Zea mays HOM05D004207 ORTHO05D005188 1.2e-19 99.8 91 51.6
TAR071G0001 Trochodendron aralioides HOM05D004207 ORTHO05D005188 1.6e-19 99.4 60 80.0
Lj5g0028239 Lotus japonicus HOM05D004207 ORTHO05D005188 1.0e-18 96.7 70 65.7
BcaB06g27278 Brassica carinata HOM05D004207 ORTHO05D005188 1.4e-18 96.3 87 56.3
Os07g0641000 Oryza sativa ssp. japonica HOM05D004207 ORTHO05D005188 2.3e-18 95.5 93 47.3
Zm00001eb109900 Zea mays HOM05D004207 ORTHO05D005188 2.3e-18 95.5 91 49.5
Peaxi162Scf00003g04926 Petunia axillaris HOM05D004207 ORTHO05D005188 2.8e-16 88.6 57 70.2
FAN04G1206 Fragaria x ananassa HOM05D004207 ORTHO05D005188 3.6e-11 71.6 54 61.1
Nn2g14966 Nelumbo nucifera HOM05D004207 ORTHO05D005188 4.7e-11 71.2 71 59.2
AagrBONN_evm.TU.Sc2ySwM_362.2903 Anthoceros agrestis HOM05D004207 ORTHO05D005188 3.0e-10 68.6 91 39.6
Pp3c2_30150 Physcomitrium patens HOM05D004207 ORTHO05D005188 1.5e-09 66.2 94 40.4
Cc06_g19690 Coffea canephora HOM05D004207 ORTHO05D005188 4.4e-09 64.7 91 44.0
BcaC01g05358 Brassica carinata HOM05D004207 ORTHO05D005188 1.7e-08 62.8 69 49.3
TWI53G0562 Tripterygium wilfordii HOM05D004207 ORTHO05D005188 2.4e-07 58.9 34 76.5
FAN27G3487 Fragaria x ananassa HOM05D004207 ORTHO05D005188 9.2e-07 57.0 32 78.1
MD14G1091500 Malus domestica HOM05D004207 ORTHO05D005188 3.5e-06 55.1 33 69.7


User provided reference genes

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