Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 5.6e-71 271.2 131 100.0
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 5.1e-48 194.9 96 100.0
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 1.3e-46 190.3 96 95.8
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 6.4e-43 177.9 118 78.0
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 2.4e-42 176.0 96 90.6
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 3.2e-42 175.6 106 81.1
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.6e-41 173.3 108 81.5
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 2.1e-41 172.9 96 87.5
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 2.7e-41 172.6 113 78.8
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 6.0e-41 171.4 117 76.1
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 1.3e-40 170.2 96 85.4
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 2.3e-40 169.5 115 77.4
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 3.0e-40 169.1 117 73.5
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 3.9e-40 168.7 117 74.4
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 3.9e-40 168.7 117 74.4
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 5.1e-40 168.3 96 85.4
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 6.7e-40 167.9 96 84.4
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 6.7e-40 167.9 117 73.5
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 8.7e-40 167.5 117 71.8
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 1.9e-39 166.4 96 83.3
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 2.5e-39 166.0 96 84.4
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 3.3e-39 165.6 117 75.2
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 3.3e-39 165.6 117 75.2
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 4.3e-39 165.2 96 82.3
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 4.3e-39 165.2 117 70.9
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 4.3e-39 165.2 95 84.2
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 4.3e-39 165.2 114 72.8
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 4.3e-39 165.2 114 72.8
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 5.6e-39 164.9 96 84.4
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 5.6e-39 164.9 107 75.7
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 5.6e-39 164.9 117 71.8
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 9.6e-39 164.1 140 63.6
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 9.6e-39 164.1 117 70.1
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 1.3e-38 163.7 117 75.2
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.3e-38 163.7 112 75.0
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.3e-38 163.7 112 75.0
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 1.6e-38 163.3 116 70.7
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 1.6e-38 163.3 115 71.3
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 2.1e-38 162.9 96 81.2
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 2.8e-38 162.5 117 71.8
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 3.7e-38 162.2 117 69.2
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 4.8e-38 161.8 117 69.2
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 4.8e-38 161.8 108 75.0
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 4.8e-38 161.8 96 80.2
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 8.2e-38 161.0 96 80.2
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 1.1e-37 160.6 96 80.2
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 1.1e-37 160.6 117 69.2
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 1.1e-37 160.6 115 71.3
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 1.1e-37 160.6 115 70.4
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 1.1e-37 160.6 116 68.1
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.4e-37 160.2 117 71.8
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 1.4e-37 160.2 101 78.2
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 1.4e-37 160.2 101 78.2
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 1.8e-37 159.8 96 80.2
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 1.8e-37 159.8 95 82.1
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 2.4e-37 159.5 116 69.0
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 2.4e-37 159.5 116 69.0
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 2.4e-37 159.5 95 81.1
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 2.4e-37 159.5 105 75.2
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 3.1e-37 159.1 104 73.1
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 4.0e-37 158.7 107 74.8
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 5.3e-37 158.3 96 78.1
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 5.3e-37 158.3 96 80.2
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 5.3e-37 158.3 96 80.2
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 5.3e-37 158.3 96 80.2
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 5.3e-37 158.3 96 80.2
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 5.3e-37 158.3 96 80.2
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 6.9e-37 157.9 96 80.2
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 6.9e-37 157.9 96 77.1
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 6.9e-37 157.9 96 77.1
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 6.9e-37 157.9 94 80.9
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 6.9e-37 157.9 112 72.3
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 9.0e-37 157.5 116 68.1
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 9.0e-37 157.5 94 79.8
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 1.2e-36 157.1 116 67.2
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 1.2e-36 157.1 96 77.1
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 1.5e-36 156.8 108 72.2
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.5e-36 156.8 96 76.0
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 1.5e-36 156.8 96 83.3
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 1.5e-36 156.8 96 83.3
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 1.5e-36 156.8 96 83.3
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 1.5e-36 156.8 96 83.3
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 1.5e-36 156.8 96 83.3
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 1.5e-36 156.8 96 83.3
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 2.0e-36 156.4 96 76.0
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 2.0e-36 156.4 115 69.6
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 2.6e-36 156.0 96 80.2
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 3.4e-36 155.6 108 68.5
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 3.4e-36 155.6 108 70.4
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 3.4e-36 155.6 106 69.8
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 3.4e-36 155.6 106 69.8
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 3.4e-36 155.6 106 69.8
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 3.4e-36 155.6 95 80.0
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.4e-36 155.6 96 79.2
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 3.4e-36 155.6 107 73.8
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 4.5e-36 155.2 96 75.0
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 4.5e-36 155.2 98 78.6
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 4.5e-36 155.2 96 77.1
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 4.5e-36 155.2 112 71.4
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 5.8e-36 154.8 108 71.3
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 5.8e-36 154.8 117 68.4
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 5.8e-36 154.8 106 71.7
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 7.6e-36 154.5 93 81.7
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 7.6e-36 154.5 105 73.3
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 1.0e-35 154.1 108 68.5
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 1.0e-35 154.1 95 82.1
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 1.0e-35 154.1 122 64.8
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.3e-35 153.7 107 72.0
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.3e-35 153.7 108 69.4
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 1.3e-35 153.7 96 81.2
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 2.9e-35 152.5 96 72.9
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 2.9e-35 152.5 108 68.5
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 2.9e-35 152.5 96 77.1
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 2.9e-35 152.5 115 67.0
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 3.8e-35 152.1 96 74.0
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 3.8e-35 152.1 96 74.0
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 3.8e-35 152.1 98 75.5
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 4.9e-35 151.8 101 73.3
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 4.9e-35 151.8 108 69.4
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 6.5e-35 151.4 98 75.5
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 8.4e-35 151.0 108 67.6
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 1.1e-34 150.6 82 92.7
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 1.1e-34 150.6 96 81.2
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.9e-34 149.8 96 79.2
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 1.9e-34 149.8 96 72.9
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 4.2e-34 148.7 104 70.2
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 4.2e-34 148.7 98 73.5
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 1.2e-33 147.1 95 78.9
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 1.6e-33 146.7 80 86.2
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.6e-33 146.7 113 64.6
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 1.6e-33 146.7 101 70.3
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 2.1e-33 146.4 115 64.3
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 4.6e-33 145.2 107 68.2
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 6.0e-33 144.8 96 69.8
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 1.0e-32 144.1 93 75.3
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 2.3e-32 142.9 115 64.3
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 3.0e-32 142.5 96 70.8
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 8.7e-32 141.0 96 74.0
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 1.1e-31 140.6 80 85.0
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.1e-31 140.6 79 86.1
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 1.3e-30 137.1 74 93.2
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 3.7e-30 135.6 82 79.3
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 4.8e-30 135.2 81 80.2
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 8.2e-30 134.4 80 80.0
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.2e-28 130.6 96 67.7
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 1.7e-27 126.7 117 55.6
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.2e-25 120.6 98 62.2
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 2.7e-25 119.4 96 65.6
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.0e-24 117.5 97 58.8
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 1.1e-21 107.5 61 80.3
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 1.8e-21 106.7 72 73.6
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 5.3e-21 105.1 56 91.1
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 1.0e-16 90.9 50 88.0
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 3.3e-15 85.9 59 71.2
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 1.3e-14 84.0 96 42.7
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 1.7e-14 83.6 47 85.1
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.0e-11 74.3 52 65.4
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 3.8e-11 72.4 107 36.4
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 4.2e-10 68.9 37 83.8
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 9.4e-10 67.8 71 54.9
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.2e-09 67.4 49 67.3
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 1.8e-08 63.5 109 35.8
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 3.7e-06 55.8 47 61.7


User provided reference genes

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