Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g23780 Coffea canephora HOM05D000411 ORTHO05D154415 1.8e-17 91.7 50 100.0
Lj4A291T54 Lonicera japonica HOM05D000411 ORTHO05D000310 3.7e-07 57.4 37 83.8
Cc04_g01700 Coffea canephora HOM05D000411 ORTHO05D000310 8.2e-07 56.2 32 84.4
Glyma.15G171100 Glycine max HOM05D000411 ORTHO05D000310 8.2e-07 56.2 32 84.4
Glyma.15G171500 Glycine max HOM05D000411 ORTHO05D000310 8.2e-07 56.2 32 84.4
Lalb_Chr24g0396511 Lupinus albus HOM05D000411 ORTHO05D000310 1.8e-06 55.1 32 84.4
Potri.003G043500 Populus trichocarpa HOM05D000411 ORTHO05D000310 1.8e-06 55.1 32 81.2
HPP92_009148 Vanilla planifolia HOM05D000411 ORTHO05D000310 1.8e-06 55.1 32 84.4
Lsat_1_v5_gn_8_86601 Lactuca sativa HOM05D000411 ORTHO05D000310 3.1e-06 54.3 36 72.2
Oeu039949.1 Olea europaea HOM05D000411 ORTHO05D000310 3.1e-06 54.3 32 84.4
arahy.Tifrunner.gnm1.ann1.YV8M45 Arachis hypogaea HOM05D000411 ORTHO05D000310 4.1e-06 53.9 35 80.0
DCAR_007640 Daucus carota HOM05D000411 ORTHO05D000310 5.3e-06 53.5 32 84.4
DCAR_026408 Daucus carota HOM05D000411 ORTHO05D000310 5.3e-06 53.5 32 84.4
Duzib160G0595 Durio zibethinus HOM05D000411 ORTHO05D000310 5.3e-06 53.5 32 81.2
Oeu009701.1 Olea europaea HOM05D000411 ORTHO05D000310 5.3e-06 53.5 32 84.4
Atru.chr7.1624 Acer truncatum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Actinidia21774 Actinidia chinensis HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Actinidia39098 Actinidia chinensis HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Aqoxy7G01168 Aquilegia oxysepala HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 7.0e-06 53.1 32 81.2
arahy.Tifrunner.gnm1.ann1.CCQT9P Arachis hypogaea HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
arahy.Tifrunner.gnm1.ann1.HE33X4 Arachis hypogaea HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
arahy.Tifrunner.gnm1.ann1.HQ34D4 Arachis hypogaea HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
arahy.Tifrunner.gnm1.ann1.Q10QVY Arachis hypogaea HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
arahy.Tifrunner.gnm1.ann1.UDXZ3L Arachis hypogaea HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
MSTRG.26439 Avicennia marina HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
MSTRG.4777 Avicennia marina HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
CSS0008582 Camellia sinensis var. sinensis HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
CSS0032918 Camellia sinensis var. sinensis HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
CSS0035061 Camellia sinensis var. sinensis HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
CSS0044784 Camellia sinensis var. sinensis HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
CSS0049748 Camellia sinensis var. sinensis HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
CANSAT56G0043 Cannabis sativa HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
CAN.G148.9 Capsicum annuum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
CAN.G57.14 Capsicum annuum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
CAN.G825.27 Capsicum annuum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 33 75.8
CAN.G862.12 Capsicum annuum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Cpa.g.sc25.78 Carica papaya HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Cfa003059 Carpinus fangiana HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Cfa003554 Carpinus fangiana HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
CiPaw.01G222100 Carya illinoinensis HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
CiPaw.04G148000 Carya illinoinensis HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Ca_21288_v3 Cicer arietinum L. HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
ClCG11G001690 Citrullus lanatus HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Ciclev10008160m.g Citrus clementina HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Cc06_g11600 Coffea canephora HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Haze_15994 Corylus avellana HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Haze_25936 Corylus avellana HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
MELO3C004631.2 Cucumis melo HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
CsaV3_2G001390 Cucumis sativus L. HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
DCAR_028270 Daucus carota HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Dinv04012 Davidia involucrata HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Dinv42337 Davidia involucrata HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Duzib192G0092 Durio zibethinus HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Duzib235G1288 Durio zibethinus HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
ECA234G3571 Erigeron canadensis HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
ECA236G0622 Erigeron canadensis HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Migut.L01510 Erythranthe guttata HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Eucgr.C03421 Eucalyptus grandis HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Eucgr.J02844 Eucalyptus grandis HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
FvH4_1g07860 Fragaria vesca HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
FvH4_6g34010 Fragaria vesca HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
FAN02G3753 Fragaria x ananassa HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
FAN05G0588 Fragaria x ananassa HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
FAN09G3267 Fragaria x ananassa HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
FAN14G3689 Fragaria x ananassa HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
FAN19G2342 Fragaria x ananassa HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
FAN23G1735 Fragaria x ananassa HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
FAN26G0943 Fragaria x ananassa HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
FAN26G1301 Fragaria x ananassa HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
FAN28G2992 Fragaria x ananassa HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Glyma.09G065200 Glycine max HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Glyma.13G105900 Glycine max HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Glyma.17G053500 Glycine max HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Gohir.A05G136200 Gossypium hirsutum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Gohir.D05G138200 Gossypium hirsutum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Gorai.009G142600 Gossypium raimondii HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
HanXRQChr04g0126131 Helianthus annuus HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
HanXRQChr12g0360491 Helianthus annuus HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Hma1.2p1_0496F.1_g165950 Hydrangea macrophylla HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Hma1.2p1_0672F.1_g201030 Hydrangea macrophylla HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Lj7A679G75 Lonicera japonica HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Lj3g0015123 Lotus japonicus HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Lj4g0017138 Lotus japonicus HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Lalb_Chr04g0263281 Lupinus albus HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Lalb_Chr11g0074541 Lupinus albus HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Lalb_Chr12g0199871 Lupinus albus HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Lalb_Chr13g0299611 Lupinus albus HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Lalb_Chr23g0276481 Lupinus albus HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
MBI01_g21124_MAGBIO Magnolia biondii HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
MD02G1082400 Malus domestica HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
MD09G1190100 Malus domestica HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
MD15G1210300 Malus domestica HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
MD17G1173000 Malus domestica HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Manes.04G141300 Manihot esculenta HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Medtr4g126010 Medicago truncatula HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Nitab4.5_0000024g0050 Nicotiana tabacum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Nitab4.5_0001519g0050 Nicotiana tabacum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Nitab4.5_0002795g0040 Nicotiana tabacum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Nitab4.5_0002945g0030 Nicotiana tabacum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Nitab4.5_0003606g0050 Nicotiana tabacum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Nitab4.5_0005003g0160 Nicotiana tabacum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Nitab4.5_0005918g0070 Nicotiana tabacum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Nitab4.5_0007622g0070 Nicotiana tabacum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Oeu033948.1 Olea europaea HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
PSO063G1053 Papaver somniferum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
PSO832G2411 Papaver somniferum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Peaxi162Scf00038g01715 Petunia axillaris HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Peaxi162Scf00563g00009 Petunia axillaris HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Peaxi162Scf00724g00117 Petunia axillaris HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Phvul.003G135100 Phaseolus vulgaris HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Phvul.009G230800 Phaseolus vulgaris HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Phvul.010G136500 Phaseolus vulgaris HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Psat7g044120 Pisum sativum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Potri.001G197600 Populus trichocarpa HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Prupe.3G046000 Prunus persica HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Prupe.7G206400 Prunus persica HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
PGR102G2797 Punica granatum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
PGR119G1082 Punica granatum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
QL02p062153 Quercus lobata HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
QL05p009695 Quercus lobata HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Rhsim03G0231400 Rhododendron simsii HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Rhsim08G0235500 Rhododendron simsii HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Rhsim12G0207900 Rhododendron simsii HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
RcHm_v2.0_Chr2g0093731 Rosa chinensis HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
RcHm_v2.0_Chr2g0143831 Rosa chinensis HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
RcHm_v2.0_Chr2g0143921 Rosa chinensis HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
RcHm_v2.0_Chr2g0143961 Rosa chinensis HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
RcHm_v2.0_Chr2g0144121 Rosa chinensis HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
RcHm_v2.0_Chr2g0144141 Rosa chinensis HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
RcHm_v2.0_Chr2g0144181 Rosa chinensis HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
RcHm_v2.0_Chr2g0144221 Rosa chinensis HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
RcHm_v2.0_Chr2g0144271 Rosa chinensis HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Sabra01G0143800 Salix brachista HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
SalBow1G0280 Salvia bowleyana HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
SHI19387 Sapria himalayana HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Sed0013014 Sechium edule HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
SEGI_28016 Sequoiadendron giganteum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Solyc03g121820.3 Solanum lycopersicum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Solyc05g016410.3 Solanum lycopersicum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Solyc07g040720.3 Solanum lycopersicum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Sopen03g040630 Solanum pennellii HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Sopen05g013680 Solanum pennellii HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Sopen07g019460 Solanum pennellii HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
PGSC0003DMG400002577 Solanum tuberosum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
PGSC0003DMG400032791 Solanum tuberosum HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
SGA_v2.0_scaffold21G09404 Striga asiatica HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
SGA_v2.0_scaffold4G02050 Striga asiatica HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Thecc.06G114800 Theobroma cacao HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
TPR.G9455 Trifolium pratense HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
unitig_62.g23753 Utricularia gibba HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
vmacro06301 Vaccinium macrocarpon HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
vmacro17036 Vaccinium macrocarpon HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
HPP92_005504 Vanilla planifolia HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
VMungo0331G0250 Vigna mungo HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
VMungo1215G2392 Vigna mungo HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
VMungo1309G2991 Vigna mungo HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
GSVIVG01016807001 Vitis vinifera HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Zm00001eb155250 Zea mays HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
Zm00001eb361220 Zea mays HOM05D000411 ORTHO05D000310 7.0e-06 53.1 32 81.2
BraA07t31440Z Brassica rapa HOM05D000411 ORTHO05D000310 9.1e-06 52.8 32 81.2


User provided reference genes

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