Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g23540 Coffea canephora HOM05D002892 ORTHO05D003224 1.7e-70 269.2 141 100.0
Cc10_g04220 Coffea canephora HOM05D002892 ORTHO05D003224 1.0e-33 147.1 156 59.0
Phvul.009G064600 Phaseolus vulgaris HOM05D002892 ORTHO05D003224 3.2e-24 115.5 121 55.4
Glyma.04G038400 Glycine max HOM05D002892 ORTHO05D003224 7.2e-24 114.4 121 56.2
Manes.18G036600 Manihot esculenta HOM05D002892 ORTHO05D003224 7.2e-24 114.4 138 57.2
Glyma.06G039500 Glycine max HOM05D002892 ORTHO05D003224 1.6e-23 113.2 121 55.4
QL02p004922 Quercus lobata HOM05D002892 ORTHO05D003224 2.1e-23 112.8 148 52.7
QL02p005020 Quercus lobata HOM05D002892 ORTHO05D003224 2.1e-23 112.8 148 52.7
Lj4A773G40 Lonicera japonica HOM05D002892 ORTHO05D003224 2.7e-23 112.5 149 53.0
CSS0027640 Camellia sinensis var. sinensis HOM05D002892 ORTHO05D003224 4.6e-23 111.7 166 47.0
CSS0039112 Camellia sinensis var. sinensis HOM05D002892 ORTHO05D003224 4.6e-23 111.7 164 47.6
Dinv39321 Davidia involucrata HOM05D002892 ORTHO05D003224 1.0e-22 110.5 155 48.4
MSTRG.25096 Avicennia marina HOM05D002892 ORTHO05D003224 1.4e-22 110.2 138 52.9
Haze_17530 Corylus avellana HOM05D002892 ORTHO05D003224 1.4e-22 110.2 141 54.6
VMungo1309G0289 Vigna mungo HOM05D002892 ORTHO05D003224 1.4e-22 110.2 121 53.7
Migut.C00585 Erythranthe guttata HOM05D002892 ORTHO05D003224 1.8e-22 109.8 134 53.7
Manes.05G173500 Manihot esculenta HOM05D002892 ORTHO05D003224 3.9e-22 108.6 136 52.2
Actinidia29869 Actinidia chinensis HOM05D002892 ORTHO05D003224 5.1e-22 108.2 150 50.7
arahy.Tifrunner.gnm1.ann1.N5DCQN Arachis hypogaea HOM05D002892 ORTHO05D003224 1.1e-21 107.1 126 54.8
Nitab4.5_0000287g0370 Nicotiana tabacum HOM05D002892 ORTHO05D003224 1.1e-21 107.1 142 52.8
Nitab4.5_0003427g0080 Nicotiana tabacum HOM05D002892 ORTHO05D003224 1.1e-21 107.1 140 53.6
arahy.Tifrunner.gnm1.ann1.WGY2X0 Arachis hypogaea HOM05D002892 ORTHO05D003224 2.0e-21 106.3 126 54.8
MD08G1102400 Malus domestica HOM05D002892 ORTHO05D003224 2.0e-21 106.3 148 52.0
MD15G1083800 Malus domestica HOM05D002892 ORTHO05D003224 2.6e-21 105.9 131 52.7
Cfa018545 Carpinus fangiana HOM05D002892 ORTHO05D003224 3.3e-21 105.5 141 53.9
Potri.002G126800 Populus trichocarpa HOM05D002892 ORTHO05D003224 4.4e-21 105.1 137 50.4
Actinidia38055 Actinidia chinensis HOM05D002892 ORTHO05D003224 7.4e-21 104.4 151 48.3
C07p59580 Brassica napus HOM05D000526 ORTHO05D000956 9.7e-21 104.0 131 50.4
BolC7t46403H Brassica oleracea HOM05D000526 ORTHO05D000956 9.7e-21 104.0 131 50.4
SGA_v2.0_scaffold345G49491 Striga asiatica HOM05D002892 ORTHO05D003224 9.7e-21 104.0 133 54.9
FvH4_2g34490 Fragaria vesca HOM05D002892 ORTHO05D003224 1.3e-20 103.6 143 49.7
Atru.chr13.686 Acer truncatum HOM05D002892 ORTHO05D003224 1.7e-20 103.2 142 50.7
Lj1g0017795 Lotus japonicus HOM05D002892 ORTHO05D003224 1.7e-20 103.2 127 50.4
THA.LOC104804433 Tarenaya hassleriana HOM05D002892 ORTHO05D003224 1.7e-20 103.2 133 50.4
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 2.8e-20 102.4 128 49.2
Aa31sc807G10 Aethionema arabicum HOM05D002892 ORTHO05D003224 3.7e-20 102.1 131 49.6
RcHm_v2.0_Chr6g0307851 Rosa chinensis HOM05D002892 ORTHO05D003224 4.8e-20 101.7 143 49.0
BraA03t15231Z Brassica rapa HOM05D000526 ORTHO05D000956 8.2e-20 100.9 131 49.6
FAN20G0094 Fragaria x ananassa HOM05D002892 ORTHO05D003224 8.2e-20 100.9 144 50.0
TWI36G1436 Tripterygium wilfordii HOM05D002892 ORTHO05D003224 8.2e-20 100.9 131 51.1
Thhalv10025972m.g Eutrema salsugineum HOM05D002892 ORTHO05D003224 1.1e-19 100.5 131 49.6
MELO3C016748.2 Cucumis melo HOM05D002892 ORTHO05D003224 1.4e-19 100.1 142 45.8
Peaxi162Scf00252g00918 Petunia axillaris HOM05D002892 ORTHO05D003224 1.4e-19 100.1 143 49.0
Gohir.A01G119300 Gossypium hirsutum HOM05D002892 ORTHO05D003224 2.4e-19 99.4 139 48.2
Gohir.D01G107500 Gossypium hirsutum HOM05D002892 ORTHO05D003224 2.4e-19 99.4 139 48.2
Gorai.002G131900 Gossypium raimondii HOM05D002892 ORTHO05D003224 2.4e-19 99.4 139 48.2
Sabra14G0020900 Salix brachista HOM05D002892 ORTHO05D003224 2.4e-19 99.4 132 50.0
CARHR241390 Cardamine hirsuta HOM05D002892 ORTHO05D003224 3.1e-19 99.0 130 50.0
FAN15G3236 Fragaria x ananassa HOM05D002892 ORTHO05D003224 3.1e-19 99.0 143 49.0
Sed0005111 Sechium edule HOM05D002892 ORTHO05D003224 3.1e-19 99.0 135 48.9
Solyc04g079000.4 Solanum lycopersicum HOM05D002892 ORTHO05D003224 3.1e-19 99.0 150 48.0
Sopen04g032580 Solanum pennellii HOM05D002892 ORTHO05D003224 3.1e-19 99.0 150 48.0
Ca_15952_v3 Cicer arietinum L. HOM05D002892 ORTHO05D003224 5.3e-19 98.2 121 48.8
Potri.014G030000 Populus trichocarpa HOM05D002892 ORTHO05D003224 5.3e-19 98.2 137 48.9
Prupe.1G436300 Prunus persica HOM05D002892 ORTHO05D003224 5.3e-19 98.2 135 48.9
BcaC09g52141 Brassica carinata HOM05D002892 ORTHO05D003224 6.9e-19 97.8 131 51.1
CiPaw.15G057700 Carya illinoinensis HOM05D002892 ORTHO05D003224 6.9e-19 97.8 141 46.8
Ciclev10002150m.g Citrus clementina HOM05D002892 ORTHO05D003224 6.9e-19 97.8 141 49.6
Sp7g31050 Schrenkiella parvula HOM05D002892 ORTHO05D003224 6.9e-19 97.8 133 49.6
BcaNung02166 Brassica carinata HOM05D002892 ORTHO05D003224 9.1e-19 97.4 130 46.9
ClCG05G019830 Citrullus lanatus HOM05D002892 ORTHO05D003224 9.1e-19 97.4 126 50.0
vmacro04453 Vaccinium macrocarpon HOM05D002892 ORTHO05D003224 9.1e-19 97.4 144 47.2
CsaV3_4G034280 Cucumis sativus L. HOM05D002892 ORTHO05D003224 1.2e-18 97.1 129 46.5
AT4G33350 Arabidopsis thaliana HOM05D002892 ORTHO05D003224 1.5e-18 96.7 131 48.1
CAN.G371.14 Capsicum annuum HOM05D002892 ORTHO05D003224 1.5e-18 96.7 157 42.7
PGSC0003DMG400008017 Solanum tuberosum HOM05D002892 ORTHO05D003224 2.0e-18 96.3 145 49.0
SalBow7G0706 Salvia bowleyana HOM05D002892 ORTHO05D003224 2.6e-18 95.9 133 50.4
Nn5g30336 Nelumbo nucifera HOM05D002892 ORTHO05D003224 3.4e-18 95.5 132 47.7
PGR031G1294 Punica granatum HOM05D002892 ORTHO05D003224 3.4e-18 95.5 150 45.3
Duzib116G0950 Durio zibethinus HOM05D002892 ORTHO05D003224 5.9e-18 94.7 136 48.5
COL.COLO4_26502 Corchorus olitorius HOM05D000987 ORTHO05D000831 7.7e-18 94.4 141 47.5
Psat5g042920 Pisum sativum HOM05D002892 ORTHO05D003224 1.3e-17 93.6 121 47.1
Hund17571 Selenicereus undatus HOM05D002892 ORTHO05D003224 1.3e-17 93.6 139 48.2
AL7G18220 Arabidopsis lyrata HOM05D002892 ORTHO05D003224 1.7e-17 93.2 127 47.2
Medtr3g101630 Medicago truncatula HOM05D002892 ORTHO05D003224 1.7e-17 93.2 121 48.8
TAR628G0976 Trochodendron aralioides HOM05D002892 ORTHO05D003224 1.7e-17 93.2 146 45.9
TPR.G28112 Trifolium pratense HOM05D002892 ORTHO05D003224 2.2e-17 92.8 121 47.9
Carub.0007s0714 Capsella rubella HOM05D002892 ORTHO05D003224 2.9e-17 92.4 128 47.7
Duzib093G1832 Durio zibethinus HOM05D002892 ORTHO05D003224 2.9e-17 92.4 134 47.8
Thecc.08G008400 Theobroma cacao HOM05D002892 ORTHO05D003224 2.9e-17 92.4 127 48.8
BraA01t00473Z Brassica rapa HOM05D002892 ORTHO05D003224 3.8e-17 92.0 128 47.7
BcaC09g52146 Brassica carinata HOM05D002892 ORTHO05D003224 5.0e-17 91.7 124 46.8
BolC1t00511H Brassica oleracea HOM05D002892 ORTHO05D003224 5.0e-17 91.7 124 46.8
A01p04910 Brassica napus HOM05D002892 ORTHO05D003224 6.5e-17 91.3 128 47.7
Lalb_Chr08g0245311 Lupinus albus HOM05D002892 ORTHO05D003224 6.5e-17 91.3 125 49.6
unitig_578.g16531 Utricularia gibba HOM05D003291 ORTHO05D003923 6.5e-17 91.3 120 47.5
DCAR_012771 Daucus carota HOM05D002892 ORTHO05D003224 1.4e-16 90.1 141 43.3
Duzib041G0039 Durio zibethinus HOM05D002892 ORTHO05D003224 1.4e-16 90.1 137 46.7
C01p05310 Brassica napus HOM05D002892 ORTHO05D003224 1.9e-16 89.7 89 57.3
Lsat_1_v5_gn_4_125040 Lactuca sativa HOM05D002892 ORTHO05D003224 1.9e-16 89.7 146 44.5
MBI02_g02986_MAGBIO Magnolia biondii HOM05D002892 ORTHO05D003224 1.9e-16 89.7 133 45.1
GSVIVG01009503001 Vitis vinifera HOM05D002892 ORTHO05D003224 2.5e-16 89.4 60 73.3
AUR62039898 Chenopodium quinoa HOM05D002892 ORTHO05D003224 4.2e-16 88.6 137 47.4
HanXRQChr09g0267661 Helianthus annuus HOM05D002892 ORTHO05D003224 4.2e-16 88.6 141 46.1
AUR62036810 Chenopodium quinoa HOM05D002892 ORTHO05D003224 5.5e-16 88.2 144 46.5
Cpa.g.sc49.11 Carica papaya HOM05D002892 ORTHO05D003224 7.2e-16 87.8 121 47.1
Glyma.18G140900 Glycine max HOM05D002892 ORTHO05D003224 2.7e-15 85.9 56 75.0
Sc15g0006160 Simmondsia chinensis HOM05D002892 ORTHO05D003224 2.7e-15 85.9 148 43.2
Oeu043560.1 Olea europaea HOM05D002892 ORTHO05D003224 3.6e-15 85.5 138 45.7
Sc15g0006240 Simmondsia chinensis HOM05D002892 ORTHO05D003224 3.6e-15 85.5 148 43.2
HPP92_016722 Vanilla planifolia HOM05D002892 ORTHO05D003224 6.1e-15 84.7 123 47.2
CDE04G3524 Ceratophyllum demersum HOM05D002892 ORTHO05D003224 7.9e-15 84.3 78 59.0
Aqoxy6G01338 Aquilegia oxysepala HOM05D002892 ORTHO05D003224 1.0e-14 84.0 134 44.0
Ah.15g091750 Amaranthus hybridus HOM05D002892 ORTHO05D003224 1.4e-14 83.6 131 45.0
Eucgr.F02353 Eucalyptus grandis HOM05D002892 ORTHO05D003224 1.8e-14 83.2 149 39.6
ATR0100G028 Amborella trichopoda HOM05D002892 ORTHO05D003224 1.5e-13 80.1 80 56.2
EL10Ac7g17212 Beta vulgaris HOM05D002892 ORTHO05D003224 2.6e-13 79.3 128 46.9
ECA232G3804 Erigeron canadensis HOM05D002892 ORTHO05D003224 5.7e-13 78.2 149 43.0
Rhsim07G0228600 Rhododendron simsii HOM05D002892 ORTHO05D003224 2.6e-10 69.3 109 47.7
SMO367G0099 Selaginella moellendorffii HOM05D002892 ORTHO05D003224 6.5e-09 64.7 57 54.4
Pp3c6_7780 Physcomitrium patens HOM05D002892 ORTHO05D003224 1.9e-08 63.2 57 54.4
Zm00001eb373200 Zea mays HOM05D002892 ORTHO05D003224 5.5e-08 61.6 118 35.6
Manes.05G199300 Manihot esculenta HOM05D002892 ORTHO05D003224 7.2e-08 61.2 90 38.9
Mapoly0066s0055 Marchantia polymorpha HOM05D002892 ORTHO05D003224 9.4e-08 60.8 122 34.4
Cpa.g.sc157.14 Carica papaya HOM05D002892 ORTHO05D003224 2.7e-07 59.3 93 38.7
Cpa.g.sc157.20 Carica papaya HOM05D002892 ORTHO05D003224 2.7e-07 59.3 93 38.7
SEGI_14149 Sequoiadendron giganteum HOM05D002892 ORTHO05D003224 2.7e-07 59.3 78 48.7
Potri.002G236000 Populus trichocarpa HOM05D002892 ORTHO05D003224 3.6e-07 58.9 56 46.4
CBR_g39650 Chara braunii HOM05D002892 ORTHO05D003224 4.7e-07 58.5 59 49.2
CARHR099700 Cardamine hirsuta HOM05D002892 ORTHO05D003224 8.0e-07 57.8 119 31.1
Nn1g08127 Nelumbo nucifera HOM05D002892 ORTHO05D003224 8.0e-07 57.8 88 40.9
HanXRQChr14g0436511 Helianthus annuus HOM05D002892 ORTHO05D003224 1.0e-06 57.4 55 45.5
CDE02G0252 Ceratophyllum demersum HOM05D009336 ORTHO05D003224 1.4e-06 57.0 55 43.6
Thecc.04G191900 Theobroma cacao HOM05D002892 ORTHO05D003224 1.4e-06 57.0 90 36.7
ECA238G4530 Erigeron canadensis HOM05D007777 ORTHO05D007255 1.8e-06 56.6 55 43.6
Gohir.A10G130100 Gossypium hirsutum HOM05D002892 ORTHO05D003224 1.8e-06 56.6 95 35.8
Ciclev10005278m.g Citrus clementina HOM05D002892 ORTHO05D003224 2.3e-06 56.2 76 36.8
Lsat_1_v5_gn_3_85381 Lactuca sativa HOM05D002892 ORTHO05D003224 3.0e-06 55.8 55 43.6
AL3G38580 Arabidopsis lyrata HOM05D002892 ORTHO05D003224 4.0e-06 55.5 64 45.3
Cfa008658 Carpinus fangiana HOM05D002892 ORTHO05D003224 4.0e-06 55.5 87 33.3
Haze_11679 Corylus avellana HOM05D002892 ORTHO05D003224 4.0e-06 55.5 87 34.5
Dinv32165 Davidia involucrata HOM05D002892 ORTHO05D003224 4.0e-06 55.5 67 40.3
Sc25g0005750 Simmondsia chinensis HOM05D002892 ORTHO05D003224 4.0e-06 55.5 115 33.0
Lsat_1_v5_gn_2_47761 Lactuca sativa HOM05D002892 ORTHO05D003224 5.2e-06 55.1 58 43.1
Sabra02G0179800 Salix brachista HOM05D002892 ORTHO05D003224 5.2e-06 55.1 116 34.5
COL.COLO4_04284 Corchorus olitorius HOM05D002892 ORTHO05D003224 6.7e-06 54.7 90 35.6
CsaV3_6G003080 Cucumis sativus L. HOM05D002892 ORTHO05D003224 6.7e-06 54.7 136 34.6
Duzib268G0514 Durio zibethinus HOM05D002892 ORTHO05D003224 6.7e-06 54.7 90 35.6
Gohir.D10G136200 Gossypium hirsutum HOM05D002892 ORTHO05D003224 6.7e-06 54.7 90 34.4
Hma1.2p1_1457F.1_g284670 Hydrangea macrophylla HOM05D002892 ORTHO05D003224 6.7e-06 54.7 60 41.7
Lsat_1_v5_gn_8_140160 Lactuca sativa HOM05D002892 ORTHO05D003224 6.7e-06 54.7 55 43.6
Pp3c16_18870 Physcomitrium patens HOM05D002892 ORTHO05D003224 6.7e-06 54.7 54 46.3
FAN07G0904 Fragaria x ananassa HOM05D002892 ORTHO05D003224 8.8e-06 54.3 55 41.8
RcHm_v2.0_Chr4g0412551 Rosa chinensis HOM05D002892 ORTHO05D003224 8.8e-06 54.3 55 41.8
TPR.G11829 Trifolium pratense HOM05D002892 ORTHO05D003224 8.8e-06 54.3 60 41.7


User provided reference genes

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