Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 1.2e-46 189.5 95 100.0
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 5.2e-26 120.9 91 65.9
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 8.8e-26 120.2 93 63.4
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 3.3e-25 118.2 95 61.1
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 3.7e-24 114.8 95 61.1
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 3.7e-24 114.8 94 61.7
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 8.2e-24 113.6 90 61.1
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 1.1e-23 113.2 96 62.5
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.4e-23 112.8 95 60.0
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 1.2e-22 109.8 86 65.1
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 1.2e-22 109.8 86 64.0
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 1.6e-22 109.4 86 65.1
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 5.9e-22 107.5 91 60.4
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 3.8e-21 104.8 89 59.6
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 3.8e-21 104.8 95 56.8
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 5.0e-21 104.4 97 58.8
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 8.5e-21 103.6 93 55.9
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 1.9e-20 102.4 93 59.1
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 2.5e-20 102.1 95 56.8
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 7.2e-20 100.5 95 55.8
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 9.4e-20 100.1 96 57.3
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 2.1e-19 99.0 96 56.2
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 2.7e-19 98.6 94 57.4
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 6.1e-19 97.4 96 55.2
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 6.8e-18 94.0 96 54.2
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 8.8e-18 93.6 96 55.2
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 2.0e-17 92.4 88 56.8
Gorai.008G193000 Gossypium raimondii HOM05D007096 ORTHO05D008288 2.6e-17 92.0 97 53.6
Lalb_Chr12g0196861 Lupinus albus HOM05D007096 ORTHO05D008288 2.6e-17 92.0 98 57.1
Dinv19962 Davidia involucrata HOM05D007096 ORTHO05D008288 3.4e-17 91.7 77 64.9
Gohir.D12G179900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 4.4e-17 91.3 97 52.6
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 7.5e-17 90.5 95 49.5
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 9.8e-17 90.1 96 52.1
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 1.3e-16 89.7 87 54.0
Gohir.A12G177500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.2e-16 89.0 90 52.2
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 2.2e-16 89.0 88 56.8
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 4.8e-16 87.8 92 51.1
FAN04G0033 Fragaria x ananassa HOM05D007096 ORTHO05D008288 6.3e-16 87.4 80 57.5
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 7.0e-15 84.0 95 50.5
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 1.6e-14 82.8 90 50.0
arahy.Tifrunner.gnm1.ann1.2U9IP4 Arachis hypogaea HOM05D007096 ORTHO05D008288 4.5e-14 81.3 81 55.6
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 5.9e-14 80.9 94 48.9
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 5.9e-14 80.9 94 51.1
CsaV3_1G005510 Cucumis sativus L. HOM05D007096 ORTHO05D008288 7.7e-14 80.5 96 46.9
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 1.3e-13 79.7 94 48.9
Sed0025401 Sechium edule HOM05D007096 ORTHO05D008288 3.8e-13 78.2 88 46.6
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 5.0e-13 77.8 95 46.3
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 6.5e-13 77.4 95 47.4
Glyma.05G026700 Glycine max HOM05D007096 ORTHO05D008288 8.6e-13 77.0 93 48.4
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 1.5e-12 76.3 88 48.9
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.9e-12 75.9 94 46.8
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 1.9e-12 75.9 96 46.9
MELO3C001984.2 Cucumis melo HOM05D007096 ORTHO05D008288 2.5e-12 75.5 87 46.0
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.2e-12 75.1 95 42.1
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 1.2e-11 73.2 87 41.4
FvH4_5g14931 Fragaria vesca HOM05D007096 ORTHO05D008288 1.2e-11 73.2 81 53.1
Migut.D01817 Erythranthe guttata HOM05D007096 ORTHO05D008288 1.6e-11 72.8 86 45.3
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.8e-11 72.0 92 47.8
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.8e-11 72.0 92 47.8
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 2.8e-11 72.0 96 46.9
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 3.6e-11 71.6 95 46.3
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.6e-11 71.6 93 45.2
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 3.6e-11 71.6 93 45.2
Migut.I00178 Erythranthe guttata HOM05D007096 ORTHO05D008288 4.7e-11 71.2 88 44.3
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 6.1e-11 70.9 94 43.6
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 6.1e-11 70.9 95 46.3
Lsat_1_v5_gn_4_108521 Lactuca sativa HOM05D007096 ORTHO05D008288 8.0e-11 70.5 87 46.0
Medtr3g037730 Medicago truncatula HOM05D007096 ORTHO05D008288 8.0e-11 70.5 93 41.9
SalBow7G4253 Salvia bowleyana HOM05D007096 ORTHO05D008288 8.0e-11 70.5 85 48.2
Sed0019012 Sechium edule HOM05D007096 ORTHO05D008288 8.0e-11 70.5 104 41.3
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.0e-10 70.1 95 40.0
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 1.0e-10 70.1 73 53.4
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.4e-10 69.7 93 44.1
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.4e-10 69.7 95 40.0
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 1.4e-10 69.7 94 44.7
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 1.4e-10 69.7 94 43.6
Sed0011431 Sechium edule HOM05D007096 ORTHO05D008288 3.0e-10 68.6 96 44.8
Thhalv10009347m.g Eutrema salsugineum HOM05D011140 ORTHO05D013248 1.5e-09 66.2 94 48.9
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 2.6e-09 65.5 95 46.3
Migut.L01293 Erythranthe guttata HOM05D007096 ORTHO05D008288 5.7e-09 64.3 86 41.9
Rhsim12G0063900 Rhododendron simsii HOM05D007096 ORTHO05D008288 9.8e-09 63.5 99 42.4
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 1.7e-08 62.8 96 42.7
CARHR019480 Cardamine hirsuta HOM05D011140 ORTHO05D013248 2.2e-08 62.4 89 44.9
Lalb_Chr04g0256051 Lupinus albus HOM05D015099 ORTHO05D008288 2.2e-08 62.4 88 40.9
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 2.2e-08 62.4 95 41.1
Oeu054876.1 Olea europaea HOM05D007096 ORTHO05D008288 2.8e-08 62.0 88 42.0
ClCG11G009950 Citrullus lanatus HOM05D007096 ORTHO05D008288 3.7e-08 61.6 94 40.4
Sed0013252 Sechium edule HOM05D007096 ORTHO05D008288 3.7e-08 61.6 93 40.9
MELO3C017172.2 Cucumis melo HOM05D007096 ORTHO05D008288 4.9e-08 61.2 88 45.5
Gohir.A11G031151 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.1e-07 60.1 93 38.7
Gohir.D02G125800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.1e-07 60.1 94 39.4
Gorai.005G141500 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.8e-07 59.3 94 38.3
Gohir.D04G191800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 4.1e-07 58.2 94 37.2
COL.COLO4_23015 Corchorus olitorius HOM05D007096 ORTHO05D008288 5.4e-07 57.8 75 49.3
CsaV3_2G010680 Cucumis sativus L. HOM05D007096 ORTHO05D008288 5.4e-07 57.8 95 42.1
BcaB03g14477 Brassica carinata HOM05D011140 ORTHO05D013248 7.0e-07 57.4 94 44.7
Eucgr.B03446 Eucalyptus grandis HOM05D007096 ORTHO05D008288 7.0e-07 57.4 94 39.4
Gohir.A04G147500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 7.0e-07 57.4 94 37.2
Gohir.D11G034500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 7.0e-07 57.4 96 37.5
Gorai.012G187200 Gossypium raimondii HOM05D007096 ORTHO05D008288 7.0e-07 57.4 94 37.2
Peaxi162Scf00222g00814 Petunia axillaris HOM05D007096 ORTHO05D008288 7.0e-07 57.4 73 46.6
A08p30150 Brassica napus HOM05D011140 ORTHO05D013248 9.2e-07 57.0 91 44.0
BraA08t34949Z Brassica rapa HOM05D011140 ORTHO05D013248 9.2e-07 57.0 91 44.0
CsaV3_1G002320 Cucumis sativus L. HOM05D007096 ORTHO05D008288 1.2e-06 56.6 92 42.4
Glyma.02G107400 Glycine max HOM05D015099 ORTHO05D008288 1.2e-06 56.6 107 38.3
BcaB05g24463 Brassica carinata HOM05D009494 ORTHO05D011604 2.0e-06 55.8 120 35.0
BcaB07g31901 Brassica carinata HOM05D011140 ORTHO05D013248 2.0e-06 55.8 92 43.5
BcaC07g38953 Brassica carinata HOM05D011140 ORTHO05D013248 2.7e-06 55.5 92 41.3
C08p18990 Brassica napus HOM05D011140 ORTHO05D013248 2.7e-06 55.5 92 41.3
BolC8t49523H Brassica oleracea HOM05D011140 ORTHO05D013248 2.7e-06 55.5 92 41.3
Eucgr.G02504 Eucalyptus grandis HOM05D007096 ORTHO05D008288 3.5e-06 55.1 88 37.5
Sed0002990 Sechium edule HOM05D007096 ORTHO05D008288 3.5e-06 55.1 93 37.6
Ah.03g135070 Amaranthus hybridus HOM05D007096 ORTHO05D008288 4.5e-06 54.7 70 41.4
BcaB03g12952 Brassica carinata HOM05D011140 ORTHO05D013248 7.8e-06 53.9 92 42.4
Carub.0001s1848 Capsella rubella HOM05D011140 ORTHO05D013248 7.8e-06 53.9 91 38.5


User provided reference genes

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