Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g23060 Coffea canephora HOM05D006336 ORTHO05D007819 1.6e-79 299.3 145 100.0
Cc08_g04540 Coffea canephora HOM05D006336 ORTHO05D007819 1.7e-76 289.3 145 97.2
Cc08_g04510 Coffea canephora HOM05D006336 ORTHO05D007819 3.7e-76 288.1 145 95.9
Cc08_g04580 Coffea canephora HOM05D006336 ORTHO05D007819 1.2e-74 283.1 145 94.5
Cc08_g04560 Coffea canephora HOM05D006336 ORTHO05D007819 2.0e-74 282.3 145 93.8
Lj8C369G2 Lonicera japonica HOM05D006336 ORTHO05D007819 4.0e-62 241.5 143 75.5
MSTRG.11848 Avicennia marina HOM05D006336 ORTHO05D007819 5.4e-59 231.1 145 71.0
SalBow4G0695 Salvia bowleyana HOM05D006336 ORTHO05D007819 5.4e-59 231.1 143 70.6
Oeu047793.1 Olea europaea HOM05D006336 ORTHO05D007819 1.6e-58 229.6 143 73.4
SGA_v2.0_scaffold89G27365 Striga asiatica HOM05D006336 ORTHO05D007819 4.6e-58 228.0 145 67.6
Hma1.2p1_0262F.1_g105216 Hydrangea macrophylla HOM05D006336 ORTHO05D007819 1.0e-57 226.9 143 73.4
Dinv09419 Davidia involucrata HOM05D006336 ORTHO05D007819 1.3e-57 226.5 143 73.4
vmacro07660 Vaccinium macrocarpon HOM05D006336 ORTHO05D007819 1.3e-57 226.5 142 70.4
unitig_32.g10956 Utricularia gibba HOM05D006336 ORTHO05D007819 1.7e-57 226.1 144 70.8
Migut.A00484 Erythranthe guttata HOM05D006336 ORTHO05D007819 1.5e-56 223.0 143 68.5
Ciclev10009629m.g Citrus clementina HOM05D006336 ORTHO05D007819 5.6e-56 221.1 143 68.5
Rhsim03G0050100 Rhododendron simsii HOM05D006336 ORTHO05D007819 1.6e-55 219.5 142 69.0
TWI32G0525 Tripterygium wilfordii HOM05D006336 ORTHO05D007819 2.1e-55 219.2 143 67.8
Atru.chr7.1812 Acer truncatum HOM05D006336 ORTHO05D007819 2.8e-55 218.8 143 69.2
PGR044G0762 Punica granatum HOM05D006336 ORTHO05D007819 2.8e-55 218.8 143 69.2
Nn6g35635 Nelumbo nucifera HOM05D006336 ORTHO05D007819 4.7e-55 218.0 142 66.9
TAR624G1124 Trochodendron aralioides HOM05D006336 ORTHO05D007819 1.4e-54 216.5 142 67.6
GSVIVG01035507001 Vitis vinifera HOM05D006336 ORTHO05D007819 1.4e-54 216.5 143 68.5
Sabra06G0167900 Salix brachista HOM05D006336 ORTHO05D007819 1.8e-54 216.1 143 67.1
Lsat_1_v5_gn_6_74301 Lactuca sativa HOM05D006336 ORTHO05D007819 2.4e-54 215.7 143 67.1
Potri.006G217700 Populus trichocarpa HOM05D006336 ORTHO05D007819 5.2e-54 214.5 143 67.1
COL.COLO4_21171 Corchorus olitorius HOM05D006336 ORTHO05D007819 8.9e-54 213.8 143 65.7
Duzib187G1166 Durio zibethinus HOM05D006336 ORTHO05D007819 1.5e-53 213.0 143 66.4
HanXRQChr03g0084651 Helianthus annuus HOM05D006336 ORTHO05D007819 1.5e-53 213.0 142 66.2
DCAR_002185 Daucus carota HOM05D006336 ORTHO05D007819 2.6e-53 212.2 140 67.9
Sopen08g023730 Solanum pennellii HOM05D006336 ORTHO05D007819 2.6e-53 212.2 143 65.7
PGSC0003DMG400020818 Solanum tuberosum HOM05D006336 ORTHO05D007819 5.8e-53 211.1 143 65.7
Glyma.17G220200 Glycine max HOM05D006336 ORTHO05D007819 7.6e-53 210.7 140 67.1
Nitab4.5_0008763g0010 Nicotiana tabacum HOM05D006336 ORTHO05D007819 7.6e-53 210.7 143 65.0
TAR636G2611 Trochodendron aralioides HOM05D006336 ORTHO05D007819 7.6e-53 210.7 142 66.2
VMungo0647G1288 Vigna mungo HOM05D006336 ORTHO05D007819 9.9e-53 210.3 144 65.3
Eucgr.C03178 Eucalyptus grandis HOM05D006336 ORTHO05D007819 1.3e-52 209.9 145 64.8
PSO135G0459 Papaver somniferum HOM05D006336 ORTHO05D007819 1.7e-52 209.5 139 66.2
arahy.Tifrunner.gnm1.ann1.6DI6VD Arachis hypogaea HOM05D006336 ORTHO05D007819 2.2e-52 209.1 145 62.8
CAN.G22.30 Capsicum annuum HOM05D006336 ORTHO05D007819 3.8e-52 208.4 143 63.6
Cpa.g.sc82.21 Carica papaya HOM05D006336 ORTHO05D007819 3.8e-52 208.4 143 65.0
CANSAT25G0260 Cannabis sativa HOM05D006336 ORTHO05D007819 6.4e-52 207.6 145 64.8
Lj5g0013864 Lotus japonicus HOM05D006336 ORTHO05D007819 1.4e-51 206.5 143 65.0
MBI13_g01670_MAGBIO Magnolia biondii HOM05D006336 ORTHO05D007819 1.4e-51 206.5 143 65.7
Cfa017842 Carpinus fangiana HOM05D006336 ORTHO05D007819 2.4e-51 205.7 143 64.3
Gohir.D06G080900 Gossypium hirsutum HOM05D006336 ORTHO05D007819 4.1e-51 204.9 143 63.6
arahy.Tifrunner.gnm1.ann1.YUGK7S Arachis hypogaea HOM05D006336 ORTHO05D007819 5.4e-51 204.5 145 61.4
Gorai.010G094300 Gossypium raimondii HOM05D006336 ORTHO05D007819 5.4e-51 204.5 143 63.6
MD08G1047000 Malus domestica HOM05D006336 ORTHO05D007819 9.2e-51 203.8 143 65.7
Ca_13088_v3 Cicer arietinum L. HOM05D006336 ORTHO05D007819 1.2e-50 203.4 143 62.9
EL10Ac5g11099 Beta vulgaris HOM05D006336 ORTHO05D007819 2.1e-50 202.6 143 62.9
Medtr1g014730 Medicago truncatula HOM05D006336 ORTHO05D007819 2.1e-50 202.6 138 65.2
Phvul.001G044100 Phaseolus vulgaris HOM05D006336 ORTHO05D007819 2.1e-50 202.6 138 64.5
Sed0027870 Sechium edule HOM05D006336 ORTHO05D007819 2.1e-50 202.6 145 62.1
Actinidia27818 Actinidia chinensis HOM05D006336 ORTHO05D007819 3.5e-50 201.8 152 62.5
ECA240G3698 Erigeron canadensis HOM05D006336 ORTHO05D007819 4.6e-50 201.4 142 61.3
FAN27G0198 Fragaria x ananassa HOM05D006336 ORTHO05D007819 6.0e-50 201.1 143 61.5
Sc04g0003070 Simmondsia chinensis HOM05D006336 ORTHO05D007819 6.0e-50 201.1 170 55.3
THA.LOC104799597 Tarenaya hassleriana HOM05D006336 ORTHO05D007819 6.0e-50 201.1 142 62.7
AT3G43540 Arabidopsis thaliana HOM05D006336 ORTHO05D007819 7.8e-50 200.7 144 62.5
AL5G21500 Arabidopsis lyrata HOM05D006336 ORTHO05D007819 1.0e-49 200.3 142 62.7
Lalb_Chr24g0393711 Lupinus albus HOM05D006336 ORTHO05D007819 1.0e-49 200.3 143 62.9
Aa31LG4G13380 Aethionema arabicum HOM05D006336 ORTHO05D007819 1.7e-49 199.5 142 63.4
MELO3C016932.2 Cucumis melo HOM05D006336 ORTHO05D007819 1.7e-49 199.5 145 62.1
Prupe.1G401200 Prunus persica HOM05D006336 ORTHO05D007819 1.7e-49 199.5 143 65.0
CiPaw.13G138600 Carya illinoinensis HOM05D006336 ORTHO05D007819 2.3e-49 199.1 143 64.3
BcaC01g02096 Brassica carinata HOM05D006336 ORTHO05D007819 3.0e-49 198.7 144 61.8
A06p22570 Brassica napus HOM05D006336 ORTHO05D007819 3.0e-49 198.7 144 61.8
C03p68560 Brassica napus HOM05D006336 ORTHO05D007819 3.0e-49 198.7 144 61.8
BolC3t19114H Brassica oleracea HOM05D006336 ORTHO05D007819 3.0e-49 198.7 144 61.8
BraA06t25331Z Brassica rapa HOM05D006336 ORTHO05D007819 3.0e-49 198.7 144 61.8
AUR62021599 Chenopodium quinoa HOM05D006336 ORTHO05D007819 3.0e-49 198.7 143 61.5
FvH4_2g37050 Fragaria vesca HOM05D006336 ORTHO05D007819 3.0e-49 198.7 143 60.8
BcaB01g01223 Brassica carinata HOM05D006336 ORTHO05D007819 3.9e-49 198.4 144 61.8
Aqoxy7G04150 Aquilegia oxysepala HOM05D006336 ORTHO05D007819 5.1e-49 198.0 173 56.1
CARHR098720 Cardamine hirsuta HOM05D006336 ORTHO05D007819 8.7e-49 197.2 138 60.9
RcHm_v2.0_Chr6g0304731 Rosa chinensis HOM05D006336 ORTHO05D007819 1.5e-48 196.4 143 60.8
Sp5g17620 Schrenkiella parvula HOM05D006336 ORTHO05D007819 1.5e-48 196.4 142 62.0
CsaV3_4G036230 Cucumis sativus L. HOM05D006336 ORTHO05D007819 1.9e-48 196.1 145 59.3
TPR.G38941 Trifolium pratense HOM05D006336 ORTHO05D007819 2.5e-48 195.7 136 63.2
FAN15G0772 Fragaria x ananassa HOM05D006336 ORTHO05D007819 3.3e-48 195.3 143 60.1
Gohir.A06G081300 Gossypium hirsutum HOM05D006336 ORTHO05D007819 3.3e-48 195.3 143 61.5
ClCG05G015960 Citrullus lanatus HOM05D006336 ORTHO05D007819 5.6e-48 194.5 145 60.0
Carub.0005s0929 Capsella rubella HOM05D006336 ORTHO05D007819 7.3e-48 194.1 144 61.1
Carub.0251s0001 Capsella rubella HOM05D006336 ORTHO05D007819 7.3e-48 194.1 144 61.1
Thhalv10002575m.g Eutrema salsugineum HOM05D006336 ORTHO05D007819 1.2e-47 193.4 142 59.9
ATR0681G177 Amborella trichopoda HOM05D006336 ORTHO05D007819 2.8e-47 192.2 142 59.9
Hund02606 Selenicereus undatus HOM05D006336 ORTHO05D007819 4.7e-47 191.4 142 59.2
Ah.11g048000 Amaranthus hybridus HOM05D006336 ORTHO05D007819 2.4e-46 189.1 134 61.9
CDE05G3418 Ceratophyllum demersum HOM05D006336 ORTHO05D007819 9.0e-46 187.2 141 60.3
HPP92_019316 Vanilla planifolia HOM05D006336 ORTHO05D007819 8.7e-41 170.6 128 57.0
CSS0028971 Camellia sinensis var. sinensis HOM05D006336 ORTHO05D007819 4.0e-38 161.8 100 71.0
Solyc08g075100.4 Solanum lycopersicum HOM05D006336 ORTHO05D007819 1.3e-36 156.8 146 51.4
AagrBONN_evm.TU.Sc2ySwM_362.2113 Anthoceros agrestis HOM05D006336 ORTHO05D007819 2.2e-36 156.0 141 52.5
Pp3c1_38250 Physcomitrium patens HOM05D006336 ORTHO05D007819 3.8e-36 155.2 131 53.4
Dinv37442 Davidia involucrata HOM05D006336 ORTHO05D007819 2.4e-35 152.5 100 70.0
Nitab4.5_0008291g0020 Nicotiana tabacum HOM05D006336 ORTHO05D007819 7.1e-35 151.0 143 51.7
SMO351G0262 Selaginella moellendorffii HOM05D006336 ORTHO05D007819 2.1e-34 149.4 140 48.6
Zm00001eb313900 Zea mays HOM05D006336 ORTHO05D007819 3.0e-33 145.6 142 47.9
Psat6g024200 Pisum sativum HOM05D006336 ORTHO05D007819 9.6e-32 140.6 95 66.3
Cc00_g35650 Coffea canephora HOM05D006336 ORTHO05D007819 1.4e-30 136.7 68 95.6
Mapoly0124s0049 Marchantia polymorpha HOM05D006336 ORTHO05D007819 2.6e-29 132.5 131 48.1
Peaxi162Scf00014g01816 Petunia axillaris HOM05D006336 ORTHO05D007819 2.6e-29 132.5 98 65.3
Manes.03G055500 Manihot esculenta HOM05D006336 ORTHO05D007819 3.4e-29 132.1 93 63.4
CDE05G3496 Ceratophyllum demersum HOM05D006336 ORTHO05D007819 2.2e-28 129.4 141 45.4
CBR_g30757 Chara braunii HOM05D006336 ORTHO05D007819 2.9e-20 102.4 123 38.2
Cre06.g278264 Chlamydomonas reinhardtii HOM05D006336 ORTHO05D007819 7.4e-16 87.8 126 34.9
Ah.01g016210 Amaranthus hybridus HOM05D006336 ORTHO05D007819 1.6e-15 86.7 123 37.4
Psat6g117360 Pisum sativum HOM05D002321 ORTHO05D007292 4.5e-13 78.6 59 61.0
PGSC0003DMG400020816 Solanum tuberosum HOM05D006336 ORTHO05D007819 1.6e-10 70.1 42 71.4
CDE02G3075 Ceratophyllum demersum HOM05D005986 ORTHO05D007467 4.3e-08 62.0 102 38.2
Medtr8g070480 Medicago truncatula HOM05D005986 ORTHO05D007467 7.4e-08 61.2 126 32.5
Thecc.09G066700 Theobroma cacao HOM05D006336 ORTHO05D007819 4.8e-07 58.5 41 65.9
Atru.chr12.1489 Acer truncatum HOM05D005986 ORTHO05D007467 8.2e-07 57.8 101 33.7
Pp3c24_14070 Physcomitrium patens HOM05D005986 ORTHO05D007467 8.2e-07 57.8 99 33.3
Potri.003G158400 Populus trichocarpa HOM05D005986 ORTHO05D007467 1.1e-06 57.4 101 32.7
Aqoxy1G00505 Aquilegia oxysepala HOM05D005986 ORTHO05D007467 1.8e-06 56.6 99 35.4
Ca_22545_v3 Cicer arietinum L. HOM05D005986 ORTHO05D007467 1.8e-06 56.6 126 31.7
CDE06G1414 Ceratophyllum demersum HOM05D005986 ORTHO05D007467 2.4e-06 56.2 86 40.7
Manes.08G097800 Manihot esculenta HOM05D005986 ORTHO05D007467 3.1e-06 55.8 101 33.7
Cc11_g14820 Coffea canephora HOM05D005986 ORTHO05D007467 4.1e-06 55.5 101 31.7
Lj4g0000342 Lotus japonicus HOM05D005986 ORTHO05D007467 4.1e-06 55.5 73 37.0
Sed0000271 Sechium edule HOM05D005986 ORTHO05D007467 4.1e-06 55.5 73 37.0
AT5G47860 Arabidopsis thaliana HOM05D005986 ORTHO05D007467 5.3e-06 55.1 96 34.4
AUR62042784 Chenopodium quinoa HOM05D005986 ORTHO05D007467 5.3e-06 55.1 126 30.2
Sabra03G0114800 Salix brachista HOM05D005986 ORTHO05D007467 5.3e-06 55.1 103 35.0
AL8G19850 Arabidopsis lyrata HOM05D005986 ORTHO05D007467 6.9e-06 54.7 96 34.4
A06p39510 Brassica napus HOM05D005986 ORTHO05D007467 6.9e-06 54.7 96 34.4
C07p38760 Brassica napus HOM05D005986 ORTHO05D007467 6.9e-06 54.7 96 34.4
BolC7t44395H Brassica oleracea HOM05D005986 ORTHO05D007467 6.9e-06 54.7 96 34.4
BraA06t26866Z Brassica rapa HOM05D005986 ORTHO05D007467 6.9e-06 54.7 96 34.4
CiPaw.05G096500 Carya illinoinensis HOM05D005986 ORTHO05D007467 6.9e-06 54.7 71 35.2
ClCG10G013170 Citrullus lanatus HOM05D005986 ORTHO05D007467 9.1e-06 54.3 73 37.0
Thhalv10004270m.g Eutrema salsugineum HOM05D005986 ORTHO05D007467 9.1e-06 54.3 96 34.4
HanXRQChr06g0175331 Helianthus annuus HOM05D005986 ORTHO05D007467 9.1e-06 54.3 101 30.7
Lalb_Chr16g0391881 Lupinus albus HOM05D005986 ORTHO05D007467 9.1e-06 54.3 123 30.1


User provided reference genes

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