Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g23030 Coffea canephora HOM05D000729 ORTHO05D001063 3.7e-13 77.0 41 100.0
CiPaw.03G002000 Carya illinoinensis HOM05D000729 ORTHO05D001063 3.2e-09 63.9 39 84.6
arahy.Tifrunner.gnm1.ann1.M13VEQ Arachis hypogaea HOM05D000729 ORTHO05D001063 5.5e-09 63.2 39 82.1
Migut.F01470 Erythranthe guttata HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQChr00c0214g0572641 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQChr00c0264g0572891 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQChr00c0434g0574661 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQChr00c0747g0577151 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQChr00c0780g0577311 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQChr01g0020151 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQChr02g0059631 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQChr05g0152351 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQChr05g0152491 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQChr07g0194901 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQChr10g0284481 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQChr10g0317951 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQChr11g0321181 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQChr11g0327111 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQChr11g0333791 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQChr12g0369921 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQChr13g0413721 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQChr13g0413871 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQChr15g0489701 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQChr16g0530791 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQChr17g0569661 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQCPg0580271 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
HanXRQCPg0580451 Helianthus annuus HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
Peaxi162Scf00014g00287 Petunia axillaris HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
Phvul.003G089802 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
Phvul.009G090272 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
SalBow1G3941 Salvia bowleyana HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
SalBow1G4562 Salvia bowleyana HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
SalBow1G6647 Salvia bowleyana HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
SalBow6G4786 Salvia bowleyana HOM05D000729 ORTHO05D001063 9.4e-09 62.4 39 82.1
BraSC143t45669Z Brassica rapa HOM05D000729 ORTHO05D001063 1.2e-08 62.0 39 82.1
arahy.Tifrunner.gnm1.ann1.B0WG4N Arachis hypogaea HOM05D000729 ORTHO05D001063 1.6e-08 61.6 39 79.5
arahy.Tifrunner.gnm1.ann1.E8A372 Arachis hypogaea HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
C06p21330 Brassica napus HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
C06p23140 Brassica napus HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
BolC2t10586H Brassica oleracea HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
BolSC29t60627H Brassica oleracea HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
BolSC35t60718H Brassica oleracea HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
BolSC37t60784H Brassica oleracea HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
BolSC49t61156H Brassica oleracea HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
BolSC49t61215H Brassica oleracea HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
BraSC103t45493Z Brassica rapa HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
BraSC138t45543Z Brassica rapa HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
BraSC58t46449Z Brassica rapa HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
CAN.G1298.16 Capsicum annuum HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
CAN.G1738.18 Capsicum annuum HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
CAN.G612.3 Capsicum annuum HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
Eucgr.I01854 Eucalyptus grandis HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
Gohir.A03G043250 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
Gohir.A04G039450 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
Gohir.A05G306433 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
Gohir.A09G045500 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
Gohir.D02G117466 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
Gohir.D08G147600 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 76.9
Hma1.2p1_0052F.1_g030753 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
Hma1.2p1_0052F.1_g030756 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
Hma1.2p1_1244F.1_g270050 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
Hma1.2p1_1244F.1_g270060 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
LjContig00319g0001918 Lotus japonicus HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
Lalb_Chr07g0191631 Lupinus albus HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
PGR111G0104 Punica granatum HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
PGR111G0125 Punica granatum HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
RcHm_v2.0_CPg0501741 Rosa chinensis HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
RcHm_v2.0_CPg0502671 Rosa chinensis HOM05D000729 ORTHO05D001063 2.7e-08 60.8 39 79.5
arahy.Tifrunner.gnm1.ann1.NY619X Arachis hypogaea HOM05D000729 ORTHO05D001063 3.6e-08 60.5 39 76.9
Gohir.A11G180330 Gossypium hirsutum HOM05D000729 ORTHO05D001063 3.6e-08 60.5 39 76.9
RcHm_v2.0_Chr5g0051091 Rosa chinensis HOM05D000729 ORTHO05D001063 3.6e-08 60.5 39 76.9
Nitab4.5_0003957g0020 Nicotiana tabacum HOM05D000729 ORTHO05D002596 4.7e-08 60.1 37 83.8
Solyc09g061460.3 Solanum lycopersicum HOM05D000729 ORTHO05D001063 4.7e-08 60.1 39 79.5
arahy.Tifrunner.gnm1.ann1.6Q4XIG Arachis hypogaea HOM05D000729 ORTHO05D001063 6.1e-08 59.7 39 76.9
arahy.Tifrunner.gnm1.ann1.984MHU Arachis hypogaea HOM05D000729 ORTHO05D001063 6.1e-08 59.7 39 74.4
CSS0034759 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 6.1e-08 59.7 39 76.9
CAN.G1167.12 Capsicum annuum HOM05D000729 ORTHO05D001063 6.1e-08 59.7 39 79.5
DCAR_032530 Daucus carota HOM05D000729 ORTHO05D001063 6.1e-08 59.7 39 79.5
DCAR_032546 Daucus carota HOM05D000729 ORTHO05D001063 6.1e-08 59.7 39 79.5
HanXRQChr13g0413651 Helianthus annuus HOM05D000729 ORTHO05D001063 6.1e-08 59.7 39 79.5
MD01G1004600 Malus domestica HOM05D000729 ORTHO05D001063 6.1e-08 59.7 39 79.5
Potri.013G139112 Populus trichocarpa HOM05D000729 ORTHO05D001063 6.1e-08 59.7 39 76.9
HanXRQChr00c0379g0574301 Helianthus annuus HOM05D000729 ORTHO05D001063 8.0e-08 59.3 38 78.9
HanXRQChr09g0249681 Helianthus annuus HOM05D000729 ORTHO05D001063 8.0e-08 59.3 39 79.5
Gohir.D02G152152 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.0e-07 58.9 39 79.5
Nitab4.5_0004920g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.0e-07 58.9 39 79.5
Solyc11g021120.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 1.0e-07 58.9 39 79.5
Gohir.A05G307266 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.4e-07 58.5 39 76.9
Gohir.D01G101826 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.4e-07 58.5 39 76.9
Sed0008128 Sechium edule HOM05D000729 ORTHO05D001063 1.4e-07 58.5 39 76.9
Sed0019191 Sechium edule HOM05D000729 ORTHO05D001063 1.4e-07 58.5 39 76.9
Hund07988 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-07 58.5 39 76.9
Hund08790 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-07 58.5 39 76.9
Hund22780 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-07 58.5 39 76.9
Hund27635 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-07 58.5 39 76.9
Hund27858 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-07 58.5 39 76.9
Hund27885 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-07 58.5 39 76.9
Hund27921 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-07 58.5 39 76.9
Hund27951 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-07 58.5 39 76.9
Hund28172 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-07 58.5 39 76.9
Hund28540 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-07 58.5 39 76.9
Hund28970 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-07 58.5 39 76.9
Hund29048 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-07 58.5 39 76.9
Hund29105 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-07 58.5 39 76.9
Hund29118 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-07 58.5 39 76.9
Hund29149 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-07 58.5 39 76.9
Hund29155 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-07 58.5 39 76.9
HanXRQChr02g0059781 Helianthus annuus HOM05D000729 ORTHO05D001063 1.8e-07 58.2 38 76.3
Nn029s41588 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.8e-07 58.2 39 76.9
Nn031s41603 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.8e-07 58.2 39 76.9
Nn206s45069 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.8e-07 58.2 39 76.9
Nn219s45284 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.8e-07 58.2 39 76.9
Nn233s45561 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.8e-07 58.2 39 76.9
Nn269s46005 Nelumbo nucifera HOM05D000729 ORTHO05D001063 1.8e-07 58.2 39 76.9
Hund03965 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.8e-07 58.2 39 74.4
CAN.G398.11 Capsicum annuum HOM05D000729 ORTHO05D001063 2.3e-07 57.8 39 76.9
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 2.3e-07 57.8 39 74.4
PSO548G0058 Papaver somniferum HOM05D000729 ORTHO05D001063 2.3e-07 57.8 39 74.4
PSO548G0065 Papaver somniferum HOM05D000729 ORTHO05D001063 2.3e-07 57.8 39 74.4
Gohir.A10G100333 Gossypium hirsutum HOM05D000729 ORTHO05D001063 3.0e-07 57.4 39 76.9
Gohir.D01G134200 Gossypium hirsutum HOM05D000729 ORTHO05D001063 3.0e-07 57.4 39 74.4
CSS0018773 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 4.0e-07 57.0 36 80.6
CsaV3_UNG208970 Cucumis sativus L. HOM05D000729 ORTHO05D001063 4.0e-07 57.0 36 80.6
Thhalv10011731m.g Eutrema salsugineum HOM05D000729 ORTHO05D001063 4.0e-07 57.0 39 74.4
Gohir.A09G093100 Gossypium hirsutum HOM05D000729 ORTHO05D001063 4.0e-07 57.0 39 76.9
Nitab4.5_0007979g0050 Nicotiana tabacum HOM05D000729 ORTHO05D001063 4.0e-07 57.0 36 83.3
CAN.G30.9 Capsicum annuum HOM05D000729 ORTHO05D001063 5.2e-07 56.6 39 74.4
Medtr4g103280 Medicago truncatula HOM05D000729 ORTHO05D002596 5.2e-07 56.6 39 74.4
Nitab4.5_0006542g0040 Nicotiana tabacum HOM05D000729 ORTHO05D001063 5.2e-07 56.6 36 80.6
Nitab4.5_0000729g0070 Nicotiana tabacum HOM05D000729 ORTHO05D001063 6.7e-07 56.2 36 80.6
Hund01554 Selenicereus undatus HOM05D000729 ORTHO05D001063 6.7e-07 56.2 39 74.4
Lalb_Chr07g0191591 Lupinus albus HOM05D000729 ORTHO05D001063 8.8e-07 55.8 39 74.4
Sc20g0001970 Simmondsia chinensis HOM05D000680 ORTHO05D000738 8.8e-07 55.8 39 71.8
Gohir.A06G098106 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.1e-06 55.5 39 76.9
Nitab4.5_0004929g0040 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.1e-06 55.5 39 74.4
BolSC56t61238H Brassica oleracea HOM05D000729 ORTHO05D001063 1.5e-06 55.1 39 76.9
CAN.G1185.9 Capsicum annuum HOM05D000729 ORTHO05D001063 1.5e-06 55.1 39 71.8
Medtr3g035660 Medicago truncatula HOM05D000729 ORTHO05D001063 1.5e-06 55.1 39 71.8
Sed0012918 Sechium edule HOM05D000729 ORTHO05D001063 2.0e-06 54.7 36 77.8
Peaxi162Scf00005g04915 Petunia axillaris HOM05D000729 ORTHO05D001063 3.3e-06 53.9 39 74.4
Lalb_Chr25g0281801 Lupinus albus HOM05D000729 ORTHO05D001063 4.4e-06 53.5 39 69.2
Nitab4.5_0012558g0020 Nicotiana tabacum HOM05D000729 ORTHO05D002596 5.7e-06 53.1 36 75.0
Nitab4.5_0004533g0060 Nicotiana tabacum HOM05D000729 ORTHO05D001063 7.5e-06 52.8 39 69.2


User provided reference genes

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