Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g22940 Coffea canephora HOM05D006963 ORTHO05D008783 0.0e+00 1241.5 615 100.0
Cc01_g10290 Coffea canephora HOM05D006963 ORTHO05D008783 0.0e+00 1212.6 615 98.0
CSS0000606 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 4.0e-188 662.1 629 56.9
Thecc.09G298600 Theobroma cacao HOM05D006963 ORTHO05D008783 9.3e-185 651.0 615 55.4
QL01p015018 Quercus lobata HOM05D006963 ORTHO05D008783 1.3e-181 640.6 622 54.8
Gohir.A13G223800 Gossypium hirsutum HOM05D006963 ORTHO05D008783 6.2e-181 638.3 618 54.7
PGSC0003DMG400007133 Solanum tuberosum HOM05D006963 ORTHO05D008783 5.3e-180 635.2 612 54.9
Atru.chr3.3511 Acer truncatum HOM05D006963 ORTHO05D008783 6.9e-180 634.8 607 54.7
Atru.chr3.3517 Acer truncatum HOM05D006963 ORTHO05D008783 6.9e-180 634.8 607 54.7
Sopen06g031250 Solanum pennellii HOM05D006963 ORTHO05D008783 2.0e-179 633.3 611 54.8
Gohir.D13G228600 Gossypium hirsutum HOM05D006963 ORTHO05D008783 4.9e-178 628.6 618 54.0
Gorai.013G259300 Gossypium raimondii HOM05D006963 ORTHO05D008783 8.4e-178 627.9 618 54.2
Solyc06g074810.3 Solanum lycopersicum HOM05D006963 ORTHO05D008783 1.1e-177 627.5 609 54.2
Lj2A1007T38 Lonicera japonica HOM05D006963 ORTHO05D008783 2.4e-177 626.3 612 55.4
Cfa010289 Carpinus fangiana HOM05D006963 ORTHO05D008783 1.6e-176 623.6 611 54.3
CiPaw.13G122900 Carya illinoinensis HOM05D006963 ORTHO05D008783 4.6e-176 622.1 614 54.2
Haze_23703 Corylus avellana HOM05D006963 ORTHO05D008783 2.3e-175 619.8 607 54.0
vmacro14391 Vaccinium macrocarpon HOM05D006963 ORTHO05D008783 5.1e-175 618.6 614 53.9
Peaxi162Scf00114g00812 Petunia axillaris HOM05D006963 ORTHO05D008783 9.6e-174 614.4 611 53.2
Ciclev10027698m.g Citrus clementina HOM05D006963 ORTHO05D008783 1.3e-173 614.0 611 52.4
Nitab4.5_0001163g0050 Nicotiana tabacum HOM05D006963 ORTHO05D008783 3.7e-173 612.5 657 51.0
MSTRG.18703 Avicennia marina HOM05D006963 ORTHO05D008783 1.8e-172 610.1 610 53.8
Rhsim01G0210700 Rhododendron simsii HOM05D006963 ORTHO05D008783 5.8e-171 605.1 610 53.1
Duzib168G1517 Durio zibethinus HOM05D006963 ORTHO05D008783 1.9e-169 600.1 618 52.6
Manes.04G012900 Manihot esculenta HOM05D006963 ORTHO05D008783 1.9e-169 600.1 617 52.2
Nitab4.5_0003155g0020 Nicotiana tabacum HOM05D006963 ORTHO05D008783 3.2e-169 599.4 658 50.3
TWI79G0599 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 1.2e-168 597.4 614 50.5
DCAR_018766 Daucus carota HOM05D006963 ORTHO05D008783 1.6e-168 597.0 613 52.4
FvH4_3g30640 Fragaria vesca HOM05D006963 ORTHO05D008783 6.7e-167 591.7 613 50.6
Prupe.6G112700 Prunus persica HOM05D006963 ORTHO05D008783 1.6e-165 587.0 611 50.6
FAN21G1782 Fragaria x ananassa HOM05D006963 ORTHO05D008783 2.8e-165 586.3 611 51.2
RcHm_v2.0_Chr5g0056861 Rosa chinensis HOM05D006963 ORTHO05D008783 2.4e-164 583.2 610 50.2
FAN16G1993 Fragaria x ananassa HOM05D006963 ORTHO05D008783 9.0e-164 581.3 606 51.2
Potri.009G005300 Populus trichocarpa HOM05D006963 ORTHO05D008783 1.0e-162 577.8 615 51.7
CANSAT64G0534 Cannabis sativa HOM05D006963 ORTHO05D008783 1.7e-162 577.0 616 51.5
Aqoxy1G01103 Aquilegia oxysepala HOM05D006963 ORTHO05D008783 1.2e-160 570.9 613 50.2
FAN11G1352 Fragaria x ananassa HOM05D006963 ORTHO05D008783 1.4e-159 567.4 665 46.6
MD03G1129000 Malus domestica HOM05D006963 ORTHO05D008783 1.8e-159 567.0 616 50.2
Sabra09G0002400 Salix brachista HOM05D006963 ORTHO05D008783 3.0e-159 566.2 610 51.1
Sabra04G0147300 Salix brachista HOM05D006963 ORTHO05D008783 1.1e-158 564.3 618 51.1
arahy.Tifrunner.gnm1.ann1.10EEU4 Arachis hypogaea HOM05D006963 ORTHO05D008783 1.5e-158 563.9 618 50.3
arahy.Tifrunner.gnm1.ann1.5C5N68 Arachis hypogaea HOM05D006963 ORTHO05D008783 1.5e-158 563.9 626 50.3
FAN25G3586 Fragaria x ananassa HOM05D006963 ORTHO05D008783 1.9e-158 563.5 676 46.6
Medtr2g084285 Medicago truncatula HOM05D006963 ORTHO05D008783 3.3e-158 562.8 618 49.4
Psat5g253040 Pisum sativum HOM05D006963 ORTHO05D008783 2.8e-157 559.7 618 50.0
Lj3g0023334 Lotus japonicus HOM05D006963 ORTHO05D008783 1.8e-156 557.0 623 49.8
TPR.G21046 Trifolium pratense HOM05D006963 ORTHO05D008783 2.4e-156 556.6 618 50.2
PSO339G1013 Papaver somniferum HOM05D006963 ORTHO05D008783 4.1e-156 555.8 603 49.6
SGA_v2.0_scaffold27G11571 Striga asiatica HOM05D006963 ORTHO05D008783 4.1e-156 555.8 610 49.2
Lalb_Chr24g0394941 Lupinus albus HOM05D006963 ORTHO05D008783 1.2e-155 554.3 624 48.2
Phvul.005G130400 Phaseolus vulgaris HOM05D006963 ORTHO05D008783 4.5e-155 552.4 617 49.8
PSO063G0444 Papaver somniferum HOM05D006963 ORTHO05D008783 1.3e-154 550.8 612 48.9
VMungo1080G0719 Vigna mungo HOM05D006963 ORTHO05D008783 5.0e-154 548.9 621 48.8
Glyma.13G322000 Glycine max HOM05D006963 ORTHO05D008783 1.4e-153 547.4 618 48.9
Ca_01706_v3 Cicer arietinum L. HOM05D006963 ORTHO05D008783 7.2e-153 545.0 606 49.2
MELO3C026954.2 Cucumis melo HOM05D006963 ORTHO05D008783 2.1e-152 543.5 618 47.4
Migut.D02292 Erythranthe guttata HOM05D006963 ORTHO05D008783 2.1e-152 543.5 608 51.5
CsaV3_6G014380 Cucumis sativus L. HOM05D006963 ORTHO05D008783 1.1e-150 537.7 618 46.9
MBI13_g24960_MAGBIO Magnolia biondii HOM05D006963 ORTHO05D008783 5.7e-150 535.4 615 47.6
Lsat_1_v5_gn_1_64681 Lactuca sativa HOM05D006963 ORTHO05D008783 1.7e-149 533.9 611 48.4
ECA248G2820 Erigeron canadensis HOM05D006963 ORTHO05D008783 8.2e-149 531.6 607 48.8
Sed0000311 Sechium edule HOM05D006963 ORTHO05D008783 1.8e-148 530.4 613 46.3
HanXRQChr11g0346501 Helianthus annuus HOM05D006963 ORTHO05D008783 6.9e-148 528.5 618 48.4
Sc06g0010790 Simmondsia chinensis HOM05D006963 ORTHO05D008783 3.8e-146 522.7 616 47.6
COL.COLO4_19194 Corchorus olitorius HOM05D006963 ORTHO05D008783 6.5e-146 521.9 539 52.7
Aa31LG5G7960 Aethionema arabicum HOM05D006963 ORTHO05D008783 2.7e-144 516.5 614 48.0
Ah.01g003350 Amaranthus hybridus HOM05D006963 ORTHO05D008783 1.3e-141 507.7 628 47.0
AL4G21950 Arabidopsis lyrata HOM05D006963 ORTHO05D008783 4.8e-141 505.8 612 47.7
AUR62029159 Chenopodium quinoa HOM05D006963 ORTHO05D008783 4.8e-141 505.8 623 46.2
EL10Ac9g22623 Beta vulgaris HOM05D006963 ORTHO05D008783 1.6e-139 500.7 623 46.7
CARHR121070 Cardamine hirsuta HOM05D006963 ORTHO05D008783 2.0e-139 500.4 611 47.0
ClCG02G021610 Citrullus lanatus HOM05D006963 ORTHO05D008783 3.0e-135 486.5 677 43.3
AUR62014974 Chenopodium quinoa HOM05D006963 ORTHO05D008783 4.0e-135 486.1 609 45.3
PGR119G1224 Punica granatum HOM05D006963 ORTHO05D008783 9.7e-134 481.5 621 46.5
TAR369G1146 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.0e-130 471.5 624 45.8
CAN.G1432.10 Capsicum annuum HOM05D006963 ORTHO05D008783 2.2e-130 470.3 517 50.3
Eucgr.J00389 Eucalyptus grandis HOM05D006963 ORTHO05D008783 5.5e-129 465.7 609 45.5
Zm00001eb190880 Zea mays HOM05D006963 ORTHO05D008783 1.7e-125 454.1 613 42.7
ATR0329G003 Amborella trichopoda HOM05D006963 ORTHO05D008783 6.3e-125 452.2 628 41.9
Os02g0823800 Oryza sativa ssp. japonica HOM05D006963 ORTHO05D008783 1.4e-124 451.1 611 42.9
Hund08356 Selenicereus undatus HOM05D006963 ORTHO05D008783 1.2e-123 448.0 625 43.2
Dinv16223 Davidia involucrata HOM05D006963 ORTHO05D008783 2.0e-118 430.6 387 57.9
Cpa.g.sc1.5 Carica papaya HOM05D006963 ORTHO05D008783 2.8e-117 426.8 620 44.4
HPP92_025769 Vanilla planifolia HOM05D006963 ORTHO05D008783 5.6e-113 412.5 609 39.4
GSVIVG01031463001 Vitis vinifera HOM05D006963 ORTHO05D008783 1.1e-108 398.3 611 39.6
Oeu008360.1 Olea europaea HOM05D006963 ORTHO05D008783 3.5e-107 393.3 604 38.4
Glyma.12G178600 Glycine max HOM05D006963 ORTHO05D008783 1.5e-97 361.3 398 49.5
unitig_899.g15359 Utricularia gibba HOM05D006963 ORTHO05D008783 7.3e-97 359.0 602 38.4
Mapoly0011s0199 Marchantia polymorpha HOM05D006963 ORTHO05D008783 1.3e-82 311.6 654 33.2
SEGI_09379 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 2.0e-78 297.7 531 37.3
SEGI_31087 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 5.4e-76 289.7 529 36.5
Pp3c19_6480 Physcomitrium patens HOM05D006963 ORTHO05D008783 5.8e-70 269.6 658 30.9
Dinv16225 Davidia involucrata HOM05D006963 ORTHO05D008783 4.9e-69 266.5 207 63.3
CDE04G0208 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 2.4e-63 247.7 395 38.7
TWI79G0699 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 3.1e-55 220.7 195 52.8
AagrBONN_evm.TU.Sc2ySwM_344.4789 Anthoceros agrestis HOM05D006963 ORTHO05D008783 6.9e-55 219.5 564 31.7
Glyma.12G178700 Glycine max HOM05D006963 ORTHO05D008783 1.1e-49 202.2 186 53.8
CBR_g8254 Chara braunii HOM05D006963 ORTHO05D008783 3.6e-43 180.6 806 25.3
TAR623G1253 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.1e-36 159.1 213 45.5
arahy.Tifrunner.gnm1.ann1.WJC7CQ Arachis hypogaea HOM05D006963 ORTHO05D008783 4.8e-32 143.7 263 38.0
CAN.G1432.11 Capsicum annuum HOM05D006963 ORTHO05D008783 1.1e-28 132.5 79 74.7
TAR623G0981 Trochodendron aralioides HOM05D006963 ORTHO05D008783 3.2e-28 131.0 86 66.3
SEGI_19036 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 1.1e-25 122.5 116 49.1
arahy.Tifrunner.gnm1.ann1.YZCM4H Arachis hypogaea HOM05D006963 ORTHO05D008783 1.2e-22 112.5 265 30.6
CDE04G1589 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 5.0e-13 80.5 51 70.6


User provided reference genes

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