Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g22900 Coffea canephora HOM05D003946 ORTHO05D004485 1.8e-37 158.7 76 100.0
Cc00_g34860 Coffea canephora HOM05D003946 ORTHO05D004485 1.8e-37 158.7 76 100.0
Cc06_g14380 Coffea canephora HOM05D003946 ORTHO05D004485 3.1e-21 104.8 66 78.8
VMungo1383G2940 Vigna mungo HOM05D003946 ORTHO05D004485 3.1e-21 104.8 74 70.3
TAR625G1091 Trochodendron aralioides HOM05D003946 ORTHO05D004485 6.8e-21 103.6 74 71.6
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 8.9e-21 103.2 74 71.6
Phvul.008G125199 Phaseolus vulgaris HOM05D003946 ORTHO05D004485 8.9e-21 103.2 74 70.3
Gohir.D04G087100 Gossypium hirsutum HOM05D003946 ORTHO05D004485 1.5e-20 102.4 74 70.3
Gorai.012G097100 Gossypium raimondii HOM05D003946 ORTHO05D004485 1.5e-20 102.4 74 70.3
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 1.5e-20 102.4 74 67.6
PGR001G0003 Punica granatum HOM05D003946 ORTHO05D004485 1.5e-20 102.4 74 70.3
PGR044G0462 Punica granatum HOM05D003946 ORTHO05D004485 1.5e-20 102.4 74 70.3
CDE02G3171 Ceratophyllum demersum HOM05D003946 ORTHO05D004485 2.0e-20 102.1 74 70.3
CDE04G0594 Ceratophyllum demersum HOM05D003946 ORTHO05D004485 2.0e-20 102.1 74 70.3
PSO210G1136 Papaver somniferum HOM05D003946 ORTHO05D004485 2.0e-20 102.1 74 70.3
Peaxi162Scf00038g00224 Petunia axillaris HOM05D003946 ORTHO05D004485 2.0e-20 102.1 74 66.2
ECA234G2728 Erigeron canadensis HOM05D004005 ORTHO05D004876 3.4e-20 101.3 74 67.6
PSO063G3610 Papaver somniferum HOM05D003946 ORTHO05D004485 3.4e-20 101.3 74 67.6
Oeu024902.1 Olea europaea HOM05D003946 ORTHO05D004485 4.4e-20 100.9 69 73.9
PSO832G3676 Papaver somniferum HOM05D003946 ORTHO05D004485 4.4e-20 100.9 74 68.9
TAR636G0475 Trochodendron aralioides HOM05D003946 ORTHO05D004485 4.4e-20 100.9 74 70.3
arahy.Tifrunner.gnm1.ann1.69CB9U Arachis hypogaea HOM05D003946 ORTHO05D004485 7.5e-20 100.1 74 68.9
BcaB06g27947 Brassica carinata HOM05D003946 ORTHO05D004485 7.5e-20 100.1 74 67.6
CARHR238370 Cardamine hirsuta HOM05D003946 ORTHO05D004485 7.5e-20 100.1 74 67.6
Gohir.A05G345884 Gossypium hirsutum HOM05D003946 ORTHO05D004485 9.9e-20 99.8 74 68.9
Aa31LG2G20050 Aethionema arabicum HOM05D003946 ORTHO05D004485 1.3e-19 99.4 74 66.2
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 1.3e-19 99.4 74 67.6
Glyma.18G174600 Glycine max HOM05D003946 ORTHO05D004485 1.7e-19 99.0 74 67.6
MELO3C004108.2 Cucumis melo HOM05D003946 ORTHO05D004485 2.2e-19 98.6 74 66.2
CsaV3_2G007790 Cucumis sativus L. HOM05D003946 ORTHO05D004485 2.2e-19 98.6 74 66.2
FAN21G2611 Fragaria x ananassa HOM05D003946 ORTHO05D004485 2.2e-19 98.6 74 67.6
Carub.0007s1011 Capsella rubella HOM05D003946 ORTHO05D004485 2.9e-19 98.2 74 66.2
ClCG11G012680 Citrullus lanatus HOM05D003946 ORTHO05D004485 2.9e-19 98.2 74 66.2
Ciclev10010190m.g Citrus clementina HOM05D003946 ORTHO05D004485 2.9e-19 98.2 74 66.2
Eucgr.C00110 Eucalyptus grandis HOM05D003946 ORTHO05D004485 2.9e-19 98.2 72 68.1
SGA_v2.0_scaffold293G47418 Striga asiatica HOM05D003946 ORTHO05D004485 2.9e-19 98.2 65 75.4
C01p08570 Brassica napus HOM05D003946 ORTHO05D004485 6.4e-19 97.1 74 64.9
Gohir.A05G007100 Gossypium hirsutum HOM05D003946 ORTHO05D004485 6.4e-19 97.1 74 66.2
Gohir.D05G008000 Gossypium hirsutum HOM05D003946 ORTHO05D004485 6.4e-19 97.1 74 66.2
Medtr2g090135 Medicago truncatula HOM05D003946 ORTHO05D004485 6.4e-19 97.1 74 64.9
Nitab4.5_0002545g0010 Nicotiana tabacum HOM05D003946 ORTHO05D004485 6.4e-19 97.1 65 73.8
Peaxi162Scf00038g00222 Petunia axillaris HOM05D003946 ORTHO05D004485 6.4e-19 97.1 65 73.8
TPR.G35554 Trifolium pratense HOM05D003946 ORTHO05D004485 6.4e-19 97.1 74 64.9
AL7G21660 Arabidopsis lyrata HOM05D003946 ORTHO05D004485 8.3e-19 96.7 74 64.9
Migut.K00288 Erythranthe guttata HOM05D003946 ORTHO05D004485 8.3e-19 96.7 65 72.3
Psat3g143400 Pisum sativum HOM05D003946 ORTHO05D004485 8.3e-19 96.7 74 66.2
Sed0010600 Sechium edule HOM05D003946 ORTHO05D004485 8.3e-19 96.7 74 64.9
Solyc07g006180.3 Solanum lycopersicum HOM05D003946 ORTHO05D004485 1.4e-18 95.9 64 71.9
Sopen07g002290 Solanum pennellii HOM05D003946 ORTHO05D004485 1.4e-18 95.9 64 71.9
unitig_62.g23482 Utricularia gibba HOM05D003946 ORTHO05D004485 1.4e-18 95.9 65 73.8
CAN.G1190.24 Capsicum annuum HOM05D003946 ORTHO05D004485 1.9e-18 95.5 64 71.9
Nitab4.5_0003269g0040 Nicotiana tabacum HOM05D003946 ORTHO05D004485 1.9e-18 95.5 65 72.3
SalBow6G3589 Salvia bowleyana HOM05D003946 ORTHO05D004485 2.4e-18 95.1 65 73.8
PGSC0003DMG400011219 Solanum tuberosum HOM05D003946 ORTHO05D004485 2.4e-18 95.1 64 71.9
Ca_01517_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 4.1e-18 94.4 74 63.5
A01p07700 Brassica napus HOM05D003946 ORTHO05D004485 5.4e-18 94.0 74 63.5
BraA01t00713Z Brassica rapa HOM05D003946 ORTHO05D004485 5.4e-18 94.0 74 63.5
CSS0017975 Camellia sinensis var. sinensis HOM05D003946 ORTHO05D004485 5.4e-18 94.0 74 66.2
CSS0020287 Camellia sinensis var. sinensis HOM05D003946 ORTHO05D004485 5.4e-18 94.0 74 66.2
SEGI_31472 Sequoiadendron giganteum HOM05D003946 ORTHO05D004485 5.4e-18 94.0 74 63.5
CAN.G363.9 Capsicum annuum HOM05D003946 ORTHO05D004485 7.1e-18 93.6 64 71.9
Nn2g14258 Nelumbo nucifera HOM05D003946 ORTHO05D004485 7.1e-18 93.6 74 67.6
Gorai.009G008100 Gossypium raimondii HOM05D003946 ORTHO05D004485 9.2e-18 93.2 75 65.3
Atru.chr7.424 Acer truncatum HOM05D003946 ORTHO05D004485 2.1e-17 92.0 65 70.8
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 2.1e-17 92.0 74 63.5
Psat5g270480 Pisum sativum HOM05D003946 ORTHO05D004485 2.1e-17 92.0 73 63.0
EL10Ac8g18885 Beta vulgaris HOM05D003946 ORTHO05D004485 3.5e-17 91.3 65 72.3
CiPaw.10G166500 Carya illinoinensis HOM05D003946 ORTHO05D004485 3.5e-17 91.3 65 70.8
Cpa.g.sc37.157 Carica papaya HOM05D003946 ORTHO05D004485 4.6e-17 90.9 65 70.8
Duzib150G0638 Durio zibethinus HOM05D003946 ORTHO05D004485 4.6e-17 90.9 65 72.3
Cfa012892 Carpinus fangiana HOM05D003946 ORTHO05D004485 6.0e-17 90.5 65 70.8
AUR62028392 Chenopodium quinoa HOM05D003946 ORTHO05D004485 6.0e-17 90.5 65 70.8
Sc18g0003220 Simmondsia chinensis HOM05D003946 ORTHO05D004485 6.0e-17 90.5 65 70.8
Ciclev10009155m.g Citrus clementina HOM05D003946 ORTHO05D004485 7.8e-17 90.1 65 69.2
Haze_21259 Corylus avellana HOM05D003946 ORTHO05D004485 7.8e-17 90.1 65 70.8
Ah.14g084270 Amaranthus hybridus HOM05D003946 ORTHO05D004485 1.7e-16 89.0 65 70.8
QL02p094618 Quercus lobata HOM05D003946 ORTHO05D004485 1.7e-16 89.0 65 69.2
Thecc.09G157800 Theobroma cacao HOM05D003946 ORTHO05D004485 1.7e-16 89.0 65 70.8
Ah.09g228630 Amaranthus hybridus HOM05D003946 ORTHO05D004485 2.3e-16 88.6 63 71.4
PSO782G1270 Papaver somniferum HOM05D003946 ORTHO05D004485 2.3e-16 88.6 74 63.5
Aqoxy3G01561 Aquilegia oxysepala HOM05D003946 ORTHO05D004485 3.0e-16 88.2 65 69.2
FvH4_3g34740 Fragaria vesca HOM05D003946 ORTHO05D004485 3.0e-16 88.2 65 69.2
FAN11G0842 Fragaria x ananassa HOM05D003946 ORTHO05D004485 3.0e-16 88.2 65 69.2
FAN15G3651 Fragaria x ananassa HOM05D003946 ORTHO05D004485 3.0e-16 88.2 65 69.2
FAN16G0870 Fragaria x ananassa HOM05D003946 ORTHO05D004485 3.0e-16 88.2 65 69.2
Duzib187G0180 Durio zibethinus HOM05D003946 ORTHO05D004485 3.9e-16 87.8 63 71.4
Duzib187G0394 Durio zibethinus HOM05D003946 ORTHO05D004485 3.9e-16 87.8 63 71.4
Thhalv10025952m.g Eutrema salsugineum HOM05D003946 ORTHO05D004485 3.9e-16 87.8 65 69.2
FAN25G1583 Fragaria x ananassa HOM05D003946 ORTHO05D004485 3.9e-16 87.8 65 69.2
RcHm_v2.0_Chr4g0405181 Rosa chinensis HOM05D003946 ORTHO05D004485 3.9e-16 87.8 65 67.7
Sp7g28360 Schrenkiella parvula HOM05D003946 ORTHO05D004485 3.9e-16 87.8 65 69.2
THA.LOC104803531 Tarenaya hassleriana HOM05D003946 ORTHO05D004485 3.9e-16 87.8 65 69.2
FAN27G0955 Fragaria x ananassa HOM05D003946 ORTHO05D004485 5.1e-16 87.4 65 67.7
Lsat_1_v5_gn_5_88241 Lactuca sativa HOM05D003946 ORTHO05D004485 5.1e-16 87.4 65 67.7
Prupe.8G039000 Prunus persica HOM05D003946 ORTHO05D004485 5.1e-16 87.4 65 67.7
TWI63G1262 Tripterygium wilfordii HOM05D003946 ORTHO05D004485 5.1e-16 87.4 63 69.8
Zm00001eb060560 Zea mays HOM05D003946 ORTHO05D004485 5.1e-16 87.4 65 67.7
Thhalv10000290m.g Eutrema salsugineum HOM05D003946 ORTHO05D004485 6.6e-16 87.0 65 69.2
Os10g0486900 Oryza sativa ssp. japonica HOM05D003946 ORTHO05D004485 6.6e-16 87.0 63 68.3
Prupe.1G099700 Prunus persica HOM05D003946 ORTHO05D004485 6.6e-16 87.0 65 67.7
TWI34G0749 Tripterygium wilfordii HOM05D003946 ORTHO05D004485 6.6e-16 87.0 63 69.8
Hma1.2p1_2732F.1_g327665 Hydrangea macrophylla HOM05D003946 ORTHO05D004485 8.6e-16 86.7 70 65.7
BcaC02g08518 Brassica carinata HOM05D003946 ORTHO05D004485 1.1e-15 86.3 65 67.7
C04p53510 Brassica napus HOM05D003946 ORTHO05D004485 1.1e-15 86.3 65 67.7
COL.COLO4_10067 Corchorus olitorius HOM05D003946 ORTHO05D004485 1.1e-15 86.3 63 69.8
Lj9A725T27 Lonicera japonica HOM05D003946 ORTHO05D004485 1.1e-15 86.3 62 69.4
MD04G1009600 Malus domestica HOM05D003946 ORTHO05D004485 1.1e-15 86.3 63 68.3
HPP92_017289 Vanilla planifolia HOM05D003946 ORTHO05D004485 1.1e-15 86.3 67 65.7
HanXRQChr09g0244711 Helianthus annuus HOM05D003946 ORTHO05D004485 1.5e-15 85.9 65 67.7
Potri.006G178900 Populus trichocarpa HOM05D003946 ORTHO05D004485 1.5e-15 85.9 63 69.8
Sed0007467 Sechium edule HOM05D003946 ORTHO05D004485 2.5e-15 85.1 65 66.2
Zm00001eb365370 Zea mays HOM05D003946 ORTHO05D004485 2.5e-15 85.1 62 69.4
Actinidia18308 Actinidia chinensis HOM05D003946 ORTHO05D004485 3.3e-15 84.7 62 69.4
HanXRQChr03g0065991 Helianthus annuus HOM05D003946 ORTHO05D004485 3.3e-15 84.7 65 66.2
C07p57950 Brassica napus HOM05D003946 ORTHO05D004485 4.3e-15 84.3 65 66.2
BolC7t46253H Brassica oleracea HOM05D003946 ORTHO05D004485 4.3e-15 84.3 65 66.2
Sabra06G0135900 Salix brachista HOM05D003946 ORTHO05D004485 4.3e-15 84.3 63 68.3
DCAR_014726 Daucus carota HOM05D003946 ORTHO05D004485 5.6e-15 84.0 74 55.4
MD16G1260600 Malus domestica HOM05D003946 ORTHO05D004485 5.6e-15 84.0 63 66.7
Rhsim03G0261300 Rhododendron simsii HOM05D003946 ORTHO05D004485 5.6e-15 84.0 67 65.7
vmacro06046 Vaccinium macrocarpon HOM05D003946 ORTHO05D004485 5.6e-15 84.0 67 65.7
AL4G13950 Arabidopsis lyrata HOM05D003946 ORTHO05D004485 7.3e-15 83.6 63 68.3
BraA04t17439Z Brassica rapa HOM05D003946 ORTHO05D004485 7.3e-15 83.6 65 66.2
Mapoly0119s0026 Marchantia polymorpha HOM05D003946 ORTHO05D004485 7.3e-15 83.6 72 61.1
Sp4g02820 Schrenkiella parvula HOM05D003946 ORTHO05D004485 9.5e-15 83.2 65 66.2
A04p18280 Brassica napus HOM05D003946 ORTHO05D004485 1.6e-14 82.4 65 64.6
Lsat_1_v5_gn_7_51160 Lactuca sativa HOM05D003946 ORTHO05D004485 2.1e-14 82.0 62 64.5
Potri.018G100700 Populus trichocarpa HOM05D003946 ORTHO05D004485 2.1e-14 82.0 63 66.7
CBR_g12383 Chara braunii HOM05D003946 ORTHO05D004485 2.8e-14 81.6 74 54.1
Actinidia38658 Actinidia chinensis HOM05D003946 ORTHO05D004485 4.7e-14 80.9 62 66.1
Dinv42798 Davidia involucrata HOM05D003946 ORTHO05D004485 6.2e-14 80.5 62 67.7
Dinv43303 Davidia involucrata HOM05D003946 ORTHO05D004485 6.2e-14 80.5 62 67.7
Nn8g40208 Nelumbo nucifera HOM05D003946 ORTHO05D004485 1.1e-13 79.7 55 72.7
GSVIVG01023716001 Vitis vinifera HOM05D003946 ORTHO05D004485 1.8e-13 79.0 65 63.1
Glyma.13G354200 Glycine max HOM05D003946 ORTHO05D004485 5.2e-13 77.4 74 56.8
Dinv41322 Davidia involucrata HOM05D003946 ORTHO05D004485 1.5e-12 75.9 61 63.9
SMO361G0476 Selaginella moellendorffii HOM05D003946 ORTHO05D004485 5.8e-12 73.9 62 56.5
Pp3c8_13040 Physcomitrium patens HOM05D003946 ORTHO05D004485 1.3e-11 72.8 59 57.6
Cre02.g075100 Chlamydomonas reinhardtii HOM05D003946 ORTHO05D004485 3.8e-11 71.2 72 47.2
PRCOL_00003553 Prasinoderma coloniale HOM05D003946 ORTHO05D004485 1.2e-09 66.2 61 52.5
MCO12G083 Micromonas commoda HOM05D003946 ORTHO05D004485 6.0e-09 63.9 72 45.8
Glyma.08G356700 Glycine max HOM05D003946 ORTHO05D004485 1.0e-08 63.2 65 55.4
AUR62039767 Chenopodium quinoa HOM05D003946 ORTHO05D004485 2.3e-08 62.0 73 46.6
CAN.G346.10 Capsicum annuum HOM05D003946 ORTHO05D013825 3.0e-08 61.6 37 78.4
BolC4t26905H Brassica oleracea HOM05D003946 ORTHO05D004485 5.1e-08 60.8 51 62.7
CAN.G14.20 Capsicum annuum HOM05D001503 ORTHO05D013825 7.3e-07 57.0 37 70.3
ATR0763G121 Amborella trichopoda HOM05D003946 ORTHO05D004485 9.6e-07 56.6 33 75.8
BcaNung02985 Brassica carinata HOM05D003946 ORTHO05D004485 9.6e-07 56.6 51 52.9
arahy.Tifrunner.gnm1.ann1.43EHF4 Arachis hypogaea HOM05D003946 ORTHO05D004485 6.2e-06 53.9 65 49.2
BcaNung00558 Brassica carinata HOM05D003946 ORTHO05D004485 6.2e-06 53.9 61 54.1


User provided reference genes

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