Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 1.6e-166 589.3 295 100.0
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 1.8e-154 549.3 299 93.3
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 7.4e-148 527.3 289 92.0
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 3.7e-123 445.3 294 73.8
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 1.1e-122 443.7 292 72.9
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 1.8e-122 443.0 293 73.0
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 1.1e-119 433.7 310 71.0
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 1.9e-119 433.0 309 69.6
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 3.3e-119 432.2 293 70.6
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 4.2e-119 431.8 295 70.8
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 5.5e-119 431.4 293 74.1
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 7.2e-119 431.0 294 71.8
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 9.5e-119 430.6 293 72.7
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 2.1e-118 429.5 292 71.6
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 2.1e-118 429.5 291 72.2
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 2.8e-118 429.1 292 71.2
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 3.6e-118 428.7 293 72.7
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 3.0e-117 425.6 292 71.9
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 8.9e-117 424.1 293 72.7
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 5.7e-116 421.4 292 70.2
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 1.3e-115 420.2 293 70.0
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 2.8e-115 419.1 292 69.2
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 3.7e-115 418.7 295 69.5
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 4.9e-115 418.3 293 69.3
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 1.4e-114 416.8 294 68.4
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 2.4e-114 416.0 297 67.7
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 4.1e-114 415.2 294 69.0
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 2.0e-113 412.9 294 68.4
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 3.8e-112 408.7 292 68.2
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 6.6e-112 407.9 295 67.8
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 1.9e-111 406.4 231 90.0
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 7.3e-111 404.4 292 67.1
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 7.3e-111 404.4 292 67.5
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 7.3e-111 404.4 290 67.9
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 3.6e-110 402.1 293 67.2
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 4.7e-110 401.7 293 67.2
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 6.1e-110 401.4 295 66.1
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 1.8e-109 399.8 293 65.5
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 1.8e-109 399.8 293 66.9
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 1.8e-109 399.8 296 68.2
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 5.2e-109 398.3 293 65.5
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 5.2e-109 398.3 295 68.1
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 5.8e-108 394.8 293 64.2
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 7.5e-108 394.4 293 63.1
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 2.9e-107 392.5 292 66.1
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 2.9e-107 392.5 290 64.8
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 4.9e-107 391.7 293 63.5
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 4.9e-107 391.7 293 63.5
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 6.4e-107 391.3 293 63.5
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 8.3e-107 391.0 294 64.3
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 1.9e-106 389.8 293 63.5
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 2.4e-106 389.4 293 63.8
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 4.1e-106 388.7 291 68.4
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 1.6e-105 386.7 293 66.2
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 2.7e-105 386.0 268 72.4
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 6.0e-105 384.8 294 62.9
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 6.0e-105 384.8 299 65.2
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 7.8e-105 384.4 294 66.3
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 2.3e-104 382.9 295 63.7
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 3.9e-104 382.1 310 60.3
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 6.6e-104 381.3 319 61.1
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 2.5e-103 379.4 293 64.2
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 4.7e-102 375.2 293 62.8
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 1.1e-101 374.0 296 64.5
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 1.5e-100 370.2 257 68.5
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 1.3e-99 367.1 291 62.9
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 2.9e-99 365.9 298 61.4
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 2.9e-99 365.9 296 61.1
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 3.2e-98 362.5 299 64.5
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 1.2e-97 360.5 361 51.5
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 1.6e-97 360.1 238 73.9
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 2.1e-97 359.8 290 60.3
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 2.3e-96 356.3 328 56.1
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 2.3e-96 356.3 295 59.0
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 3.0e-96 355.9 276 62.0
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 4.0e-93 345.5 294 58.2
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 2.6e-92 342.8 312 57.4
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 7.5e-92 341.3 292 58.2
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 7.5e-92 341.3 259 63.7
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 1.7e-91 340.1 273 61.2
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 1.7e-88 330.1 283 57.6
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 1.7e-88 330.1 294 54.8
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 2.3e-88 329.7 229 69.4
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.1e-85 320.9 201 75.6
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 1.7e-83 313.5 201 77.1
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 8.4e-83 311.2 229 69.9
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 1.7e-80 303.5 243 64.6
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 4.3e-79 298.9 257 56.4
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 2.8e-78 296.2 209 69.4
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 3.1e-77 292.7 200 70.0
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 2.0e-76 290.0 190 80.0
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 9.3e-74 281.2 291 47.8
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 1.2e-73 280.8 303 45.9
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 8.7e-72 274.6 294 46.9
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 1.9e-71 273.5 285 50.2
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 2.6e-68 263.1 175 69.7
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 7.6e-68 261.5 293 45.4
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 2.1e-65 253.4 198 61.6
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 1.8e-64 250.4 293 47.8
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 2.9e-59 233.0 201 56.7
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 1.9e-58 230.3 147 82.3
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 2.5e-58 229.9 186 62.4
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.1e-55 221.1 173 61.3
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 8.4e-51 204.9 209 52.2
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 1.4e-50 204.1 185 56.8
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 1.1e-45 188.0 221 41.2
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.1e-39 167.9 137 60.6
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 9.7e-39 164.9 124 62.9
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 8.2e-38 161.8 96 77.1
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 2.9e-35 153.3 95 75.8
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 1.4e-34 151.0 323 31.9
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 3.2e-34 149.8 96 77.1
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 1.7e-30 137.5 94 67.0
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 6.3e-30 135.6 125 55.2
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 1.4e-29 134.4 95 62.1
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 2.6e-28 130.2 68 89.7
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 5.9e-28 129.0 95 73.7
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 8.5e-27 125.2 93 62.4
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 9.4e-26 121.7 80 70.0
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 1.6e-25 120.9 108 53.7
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 2.3e-24 117.1 171 36.3
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 2.3e-24 117.1 123 51.2
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 2.0e-23 114.0 98 57.1
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 2.0e-23 114.0 60 96.7
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 4.8e-22 109.4 81 59.3
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 3.1e-21 106.7 214 30.8
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 2.2e-19 100.5 97 50.5
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 2.0e-15 87.4 55 65.5
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 4.8e-14 82.8 90 45.6
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 3.1e-13 80.1 70 55.7
Hund15669 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.6e-12 77.8 59 62.7
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 2.5e-10 70.5 53 58.5
Cc00_g28570 Coffea canephora HOM05D049865 ORTHO05D153318 8.3e-06 55.5 25 96.0


User provided reference genes

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