Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g22840 Coffea canephora HOM05D003247 ORTHO05D019032 1.6e-67 259.2 122 100.0
Cc02_g32970 Coffea canephora HOM05D003247 ORTHO05D019032 1.2e-62 243.0 117 98.3
Cc00_g15000 Coffea canephora HOM05D003247 ORTHO05D019032 5.6e-41 171.0 130 70.0
Cc00_g29250 Coffea canephora HOM05D000343 ORTHO05D000975 4.3e-25 118.2 71 81.7
Cc00_g15010 Coffea canephora HOM05D003247 ORTHO05D019032 1.9e-17 92.8 63 76.2
Cc02_g32980 Coffea canephora HOM05D003247 ORTHO05D019032 1.9e-17 92.8 56 80.4
BraA06t25281Z Brassica rapa HOM05D003247 ORTHO05D003974 1.9e-12 76.3 63 61.9
Aa31LG2G950 Aethionema arabicum HOM05D003247 ORTHO05D003974 9.3e-12 73.9 41 90.2
AL2G11370 Arabidopsis lyrata HOM05D003247 ORTHO05D003974 9.3e-12 73.9 41 90.2
AT1G63770 Arabidopsis thaliana HOM05D003247 ORTHO05D003974 9.3e-12 73.9 41 90.2
BcaB07g31551 Brassica carinata HOM05D003247 ORTHO05D003974 9.3e-12 73.9 41 90.2
BcaC02g10366 Brassica carinata HOM05D003247 ORTHO05D003974 9.3e-12 73.9 41 90.2
A06p04610 Brassica napus HOM05D003247 ORTHO05D003974 9.3e-12 73.9 41 90.2
A06p21950 Brassica napus HOM05D003247 ORTHO05D003974 9.3e-12 73.9 41 90.2
C04p29680 Brassica napus HOM05D003247 ORTHO05D003974 9.3e-12 73.9 41 90.2
BolC4t24494H Brassica oleracea HOM05D003247 ORTHO05D003974 9.3e-12 73.9 41 90.2
BraA06t23665Z Brassica rapa HOM05D003247 ORTHO05D003974 9.3e-12 73.9 41 90.2
Carub.0002s0107 Capsella rubella HOM05D003247 ORTHO05D003974 9.3e-12 73.9 41 90.2
Thhalv10023233m.g Eutrema salsugineum HOM05D003247 ORTHO05D003974 9.3e-12 73.9 41 90.2
Sp2g00910 Schrenkiella parvula HOM05D003247 ORTHO05D003974 9.3e-12 73.9 41 90.2
Cc08_g14920 Coffea canephora HOM05D003247 ORTHO05D003974 2.1e-11 72.8 41 87.8
Eucgr.D01833 Eucalyptus grandis HOM05D003247 ORTHO05D003974 2.1e-11 72.8 41 87.8
Lj8A219G33 Lonicera japonica HOM05D003247 ORTHO05D003974 2.1e-11 72.8 41 87.8
THA.LOC104809378 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 2.7e-11 72.4 41 87.8
C06p02710 Brassica napus HOM05D003247 ORTHO05D003974 3.5e-11 72.0 39 89.7
Duzib205G1189 Durio zibethinus HOM05D003247 ORTHO05D003974 3.5e-11 72.0 41 87.8
Manes.02G020950 Manihot esculenta HOM05D003247 ORTHO05D003974 3.5e-11 72.0 41 87.8
Nn1g01570 Nelumbo nucifera HOM05D003247 ORTHO05D003974 3.5e-11 72.0 41 87.8
Oeu011040.2 Olea europaea HOM05D003247 ORTHO05D003974 3.5e-11 72.0 41 87.8
Hund14825 Selenicereus undatus HOM05D003247 ORTHO05D003974 3.5e-11 72.0 41 87.8
unitig_61.g26270 Utricularia gibba HOM05D003247 ORTHO05D003974 3.5e-11 72.0 41 87.8
BcaC08g43016 Brassica carinata HOM05D003247 ORTHO05D003974 4.6e-11 71.6 41 87.8
CANSAT35G0036 Cannabis sativa HOM05D003247 ORTHO05D003974 4.6e-11 71.6 41 85.4
Nn6g33377 Nelumbo nucifera HOM05D003247 ORTHO05D003974 4.6e-11 71.6 41 87.8
Nitab4.5_0001615g0030 Nicotiana tabacum HOM05D003247 ORTHO05D003974 4.6e-11 71.6 41 85.4
Nitab4.5_0002975g0050 Nicotiana tabacum HOM05D003247 ORTHO05D003974 4.6e-11 71.6 41 85.4
Phvul.002G290908 Phaseolus vulgaris HOM05D003247 ORTHO05D003974 4.6e-11 71.6 41 87.8
Atru.chr9.2165 Acer truncatum HOM05D003247 ORTHO05D003974 6.0e-11 71.2 41 87.8
CSS0019820 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 6.0e-11 71.2 41 87.8
CSS0047123 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 6.0e-11 71.2 41 87.8
CiPaw.11G133300 Carya illinoinensis HOM05D003247 ORTHO05D003974 6.0e-11 71.2 41 87.8
Ciclev10018808m.g Citrus clementina HOM05D003247 ORTHO05D003974 6.0e-11 71.2 41 87.8
Dinv37625 Davidia involucrata HOM05D003247 ORTHO05D003974 6.0e-11 71.2 41 87.8
Glyma.05G209200 Glycine max HOM05D003247 ORTHO05D003974 6.0e-11 71.2 41 87.8
Glyma.08G015900 Glycine max HOM05D003247 ORTHO05D003974 6.0e-11 71.2 41 87.8
Gohir.A03G018800 Gossypium hirsutum HOM05D003247 ORTHO05D003974 6.0e-11 71.2 41 87.8
Gohir.D03G150100 Gossypium hirsutum HOM05D003247 ORTHO05D003974 6.0e-11 71.2 41 87.8
Gorai.003G157400 Gossypium raimondii HOM05D003247 ORTHO05D003974 6.0e-11 71.2 41 87.8
MBI17_g42619_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 6.0e-11 71.2 41 87.8
Rhsim02G0233100 Rhododendron simsii HOM05D003247 ORTHO05D003974 6.0e-11 71.2 41 87.8
RhsimUnG0160000 Rhododendron simsii HOM05D003247 ORTHO05D003974 6.0e-11 71.2 41 87.8
Thecc.03G281500 Theobroma cacao HOM05D003247 ORTHO05D003974 6.0e-11 71.2 41 87.8
ATR0680G039 Amborella trichopoda HOM05D003247 ORTHO05D003974 7.9e-11 70.9 41 85.4
arahy.Tifrunner.gnm1.ann1.1Z7M3S Arachis hypogaea HOM05D003247 ORTHO05D003974 7.9e-11 70.9 41 85.4
arahy.Tifrunner.gnm1.ann1.5U7DNF Arachis hypogaea HOM05D003247 ORTHO05D003974 7.9e-11 70.9 41 85.4
Migut.A00742 Erythranthe guttata HOM05D003247 ORTHO05D003974 7.9e-11 70.9 41 85.4
SGA_v2.0_scaffold173G39167 Striga asiatica HOM05D003247 ORTHO05D003974 7.9e-11 70.9 45 80.0
BolC6t35397H Brassica oleracea HOM05D003247 ORTHO05D003974 1.0e-10 70.5 41 85.4
FvH4_5g02730 Fragaria vesca HOM05D003247 ORTHO05D003974 1.0e-10 70.5 41 85.4
FAN04G2168 Fragaria x ananassa HOM05D003247 ORTHO05D003974 1.0e-10 70.5 41 85.4
FAN08G0767 Fragaria x ananassa HOM05D003247 ORTHO05D003974 1.0e-10 70.5 41 85.4
FAN13G0605 Fragaria x ananassa HOM05D003247 ORTHO05D003974 1.0e-10 70.5 41 85.4
FAN18G0212 Fragaria x ananassa HOM05D003247 ORTHO05D003974 1.0e-10 70.5 41 85.4
HanXRQChr03g0086871 Helianthus annuus HOM05D003247 ORTHO05D003974 1.0e-10 70.5 41 85.4
RcHm_v2.0_Chr7g0197201 Rosa chinensis HOM05D003247 ORTHO05D003974 1.0e-10 70.5 41 85.4
Sed0003481 Sechium edule HOM05D003247 ORTHO05D003974 1.0e-10 70.5 41 85.4
Actinidia01994 Actinidia chinensis HOM05D003247 ORTHO05D003974 1.3e-10 70.1 41 85.4
CDE05G0892 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 1.3e-10 70.1 41 85.4
Haze_08801 Corylus avellana HOM05D003247 ORTHO05D003974 1.3e-10 70.1 41 85.4
DCAR_008371 Daucus carota HOM05D003247 ORTHO05D003974 1.3e-10 70.1 41 85.4
DCAR_008372 Daucus carota HOM05D003247 ORTHO05D003974 1.3e-10 70.1 41 85.4
Dinv38927 Davidia involucrata HOM05D003247 ORTHO05D003974 1.3e-10 70.1 41 85.4
Duzib084G1173 Durio zibethinus HOM05D003247 ORTHO05D003974 1.3e-10 70.1 41 85.4
QL12p032548 Quercus lobata HOM05D003247 ORTHO05D003974 1.3e-10 70.1 41 85.4
TAR636G0433 Trochodendron aralioides HOM05D003247 ORTHO05D003974 1.3e-10 70.1 41 85.4
HPP92_025967 Vanilla planifolia HOM05D003247 ORTHO05D003974 1.3e-10 70.1 41 85.4
GSVIVG01019730001 Vitis vinifera HOM05D003247 ORTHO05D003974 1.3e-10 70.1 41 85.4
MSTRG.1858 Avicennia marina HOM05D003247 ORTHO05D003974 1.8e-10 69.7 41 82.9
Psat7g031800 Pisum sativum HOM05D003247 ORTHO05D003974 1.8e-10 69.7 41 85.4
Zm00001eb038870 Zea mays HOM05D003247 ORTHO05D003974 1.8e-10 69.7 41 82.9
CAN.G774.62 Capsicum annuum HOM05D003247 ORTHO05D003974 2.3e-10 69.3 41 82.9
Medtr8g098525 Medicago truncatula HOM05D003247 ORTHO05D003974 2.3e-10 69.3 41 82.9
Peaxi162Scf00119g00138 Petunia axillaris HOM05D003247 ORTHO05D003974 2.3e-10 69.3 41 82.9
Potri.001G102051 Populus trichocarpa HOM05D003247 ORTHO05D003974 2.3e-10 69.3 41 85.4
Potri.003G129500 Populus trichocarpa HOM05D003247 ORTHO05D003974 2.3e-10 69.3 41 85.4
SalBow1G5596 Salvia bowleyana HOM05D003247 ORTHO05D003974 2.3e-10 69.3 41 85.4
Solyc08g081250.4 Solanum lycopersicum HOM05D003247 ORTHO05D003974 2.3e-10 69.3 41 82.9
Sopen08g029560 Solanum pennellii HOM05D003247 ORTHO05D003974 2.3e-10 69.3 41 82.9
PGSC0003DMG400012199 Solanum tuberosum HOM05D003247 ORTHO05D003974 2.3e-10 69.3 41 82.9
vmacro11386 Vaccinium macrocarpon HOM05D003247 ORTHO05D003974 2.3e-10 69.3 41 85.4
VMungo0251G1424 Vigna mungo HOM05D003247 ORTHO05D003974 2.3e-10 69.3 41 85.4
Ah.02g110410 Amaranthus hybridus HOM05D003247 ORTHO05D003974 3.0e-10 68.9 41 82.9
Lj4g0006056 Lotus japonicus HOM05D003247 ORTHO05D003974 3.0e-10 68.9 41 82.9
Mapoly0042s0035 Marchantia polymorpha HOM05D003247 ORTHO05D003974 3.0e-10 68.9 41 82.9
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 3.0e-10 68.9 41 85.4
Ca_17516_v3 Cicer arietinum L. HOM05D003247 ORTHO05D003974 3.9e-10 68.6 41 80.5
MBI18_g02832_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 3.9e-10 68.6 46 78.3
SalBow1G0073 Salvia bowleyana HOM05D003247 ORTHO05D003974 3.9e-10 68.6 39 87.2
ClCG01G002580 Citrullus lanatus HOM05D003247 ORTHO05D003974 5.1e-10 68.2 41 82.9
MELO3C005688.2 Cucumis melo HOM05D003247 ORTHO05D003974 5.1e-10 68.2 41 82.9
CsaV3_5G002680 Cucumis sativus L. HOM05D003247 ORTHO05D003974 5.1e-10 68.2 41 82.9
HanXRQChr13g0416311 Helianthus annuus HOM05D003247 ORTHO05D003974 5.1e-10 68.2 41 82.9
Lsat_1_v5_gn_6_86420 Lactuca sativa HOM05D003247 ORTHO05D003974 5.1e-10 68.2 41 82.9
Potri.001G101975 Populus trichocarpa HOM05D003247 ORTHO05D003974 5.1e-10 68.2 41 82.9
Sabra01G0077100 Salix brachista HOM05D003247 ORTHO05D003974 5.1e-10 68.2 41 82.9
Sabra01G0077200 Salix brachista HOM05D003247 ORTHO05D003974 5.1e-10 68.2 41 82.9
TPR.G12767 Trifolium pratense HOM05D003247 ORTHO05D003974 5.1e-10 68.2 41 82.9
AUR62010702 Chenopodium quinoa HOM05D003247 ORTHO05D003974 6.7e-10 67.8 41 82.9
AUR62017183 Chenopodium quinoa HOM05D003247 ORTHO05D003974 6.7e-10 67.8 41 82.9
MD14G1107600 Malus domestica HOM05D003247 ORTHO05D003974 6.7e-10 67.8 41 82.9
Os08g0562700 Oryza sativa ssp. japonica HOM05D003247 ORTHO05D003974 6.7e-10 67.8 41 80.5
Ah.12g051740 Amaranthus hybridus HOM05D003247 ORTHO05D003974 8.7e-10 67.4 41 80.5
Migut.E01080 Erythranthe guttata HOM05D003247 ORTHO05D003974 8.7e-10 67.4 41 80.5
Gohir.A08G183600 Gossypium hirsutum HOM05D003247 ORTHO05D003974 8.7e-10 67.4 42 81.0
PGR031G0275 Punica granatum HOM05D003247 ORTHO05D003974 8.7e-10 67.4 41 80.5
Sc01g0005530 Simmondsia chinensis HOM05D003247 ORTHO05D003974 8.7e-10 67.4 41 80.5
Sc01g0009690 Simmondsia chinensis HOM05D003247 ORTHO05D003974 8.7e-10 67.4 41 80.5
EL10Ac5g12795 Beta vulgaris HOM05D003247 ORTHO05D003974 1.5e-09 66.6 41 80.5
ECA240G1820 Erigeron canadensis HOM05D003247 ORTHO05D003974 1.5e-09 66.6 41 80.5
PSO063G5587 Papaver somniferum HOM05D003247 ORTHO05D003974 1.5e-09 66.6 41 80.5
PSO832G0897 Papaver somniferum HOM05D003247 ORTHO05D003974 1.5e-09 66.6 41 80.5
Prupe.5G103100 Prunus persica HOM05D003247 ORTHO05D003974 1.5e-09 66.6 41 80.5
TWI60G0271 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 1.5e-09 66.6 41 80.5
Actinidia14574 Actinidia chinensis HOM05D003247 ORTHO05D003974 2.5e-09 65.9 41 80.5
Cc02_g32990 Coffea canephora HOM05D003247 ORTHO05D019032 2.5e-09 65.9 50 68.0
HanXRQChr03g0086881 Helianthus annuus HOM05D003247 ORTHO05D003974 2.5e-09 65.9 41 80.5
Pp3c15_1150 Physcomitrium patens HOM05D003247 ORTHO05D003974 2.5e-09 65.9 41 78.0
Aqoxy5G04015 Aquilegia oxysepala HOM05D003247 ORTHO05D003974 3.3e-09 65.5 41 80.5
Pp3c26_1330 Physcomitrium patens HOM05D003247 ORTHO05D003974 3.3e-09 65.5 41 80.5
SHI07163 Sapria himalayana HOM05D003247 ORTHO05D003974 3.3e-09 65.5 42 73.8
AagrBONN_evm.TU.Sc2ySwM_228.2960 Anthoceros agrestis HOM05D003247 ORTHO05D003974 7.4e-09 64.3 41 78.0
PSO210G5648 Papaver somniferum HOM05D003247 ORTHO05D003974 7.4e-09 64.3 41 78.0
THA.LOC104817937 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 7.4e-09 64.3 41 78.0
EL10Ac9g20777 Beta vulgaris HOM05D003247 ORTHO05D003974 9.6e-09 63.9 41 78.0
TPR.G28250 Trifolium pratense HOM05D003247 ORTHO05D003974 9.6e-09 63.9 41 75.6
Oeu042332.3 Olea europaea HOM05D003247 ORTHO05D003974 1.3e-08 63.5 41 80.5
MD06G1086400 Malus domestica HOM05D003247 ORTHO05D003974 1.6e-08 63.2 41 78.0
Sed0014492 Sechium edule HOM05D003247 ORTHO05D003974 2.1e-08 62.8 41 78.0
Pp3c9_1240 Physcomitrium patens HOM05D003247 ORTHO05D003974 8.1e-08 60.8 41 78.0
MCO16G652 Micromonas commoda HOM05D003247 ORTHO05D003974 1.8e-07 59.7 41 70.7
THA.LOC104815066 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 1.8e-07 59.7 41 73.2
Lsat_1_v5_gn_6_86400 Lactuca sativa HOM05D003247 ORTHO05D003974 3.1e-07 58.9 39 76.9
PSO210G5645 Papaver somniferum HOM05D003247 ORTHO05D003974 3.1e-07 58.9 41 73.2
TWI81G0748 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 4.0e-07 58.5 41 75.6
PRCOL_00005594 Prasinoderma coloniale HOM05D003247 ORTHO05D003974 5.3e-07 58.2 41 65.9
SMO119G0190 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 5.3e-07 58.2 41 73.2
SMO119G0209 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 5.3e-07 58.2 41 73.2
SMO351G0363 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 5.3e-07 58.2 41 73.2
MCO13G113 Micromonas commoda HOM05D003247 ORTHO05D003974 6.9e-07 57.8 41 73.2
Lalb_Chr16g0390091 Lupinus albus HOM05D003247 ORTHO05D003974 2.6e-06 55.8 41 75.6
CBR_g951 Chara braunii HOM05D003247 ORTHO05D003974 4.5e-06 55.1 41 68.3
CBR_g30015 Chara braunii HOM05D003247 ORTHO05D003974 5.8e-06 54.7 41 65.9
PSO149G0001 Papaver somniferum HOM05D003247 ORTHO05D003974 7.6e-06 54.3 41 68.3


User provided reference genes

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