Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 5.2e-166 587.8 332 100.0
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.6e-114 416.8 334 66.2
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 2.8e-111 406.0 332 65.1
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 5.9e-109 398.3 332 68.4
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 1.6e-106 390.2 330 62.1
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 2.3e-105 386.3 331 64.4
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 3.0e-105 386.0 332 62.3
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 5.1e-105 385.2 332 63.0
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 8.7e-105 384.4 326 63.8
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 8.7e-105 384.4 332 61.4
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 2.2e-103 379.8 330 65.2
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 2.8e-103 379.4 330 60.9
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 3.7e-103 379.0 328 60.7
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 3.7e-103 379.0 330 65.2
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 4.8e-103 378.6 332 65.1
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 1.8e-102 376.7 332 60.8
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 9.1e-102 374.4 331 59.2
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 3.4e-101 372.5 326 60.4
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 3.4e-101 372.5 332 64.5
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 4.5e-101 372.1 330 65.8
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 5.0e-100 368.6 330 64.2
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.1e-99 367.5 332 60.5
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 9.4e-99 364.4 332 58.1
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 1.0e-97 360.9 332 63.3
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 2.3e-97 359.8 384 53.9
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.0e-96 356.7 330 60.0
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 3.3e-96 355.9 334 59.0
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 5.7e-96 355.1 330 62.4
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 2.8e-95 352.8 332 59.3
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 4.8e-95 352.1 332 62.0
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 8.2e-95 351.3 333 59.8
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.1e-94 350.9 332 57.8
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.1e-94 350.9 324 57.1
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 1.4e-94 350.5 326 58.9
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 6.9e-94 348.2 333 58.0
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 6.9e-94 348.2 324 56.8
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 6.9e-94 348.2 324 56.8
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 2.6e-93 346.3 333 59.2
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 5.9e-93 345.1 333 63.7
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 7.7e-93 344.7 332 61.1
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.1e-91 340.9 333 63.7
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.1e-91 340.9 333 63.7
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 5.5e-91 338.6 332 60.2
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 1.8e-89 333.6 333 60.7
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 3.0e-89 332.8 332 60.8
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 9.7e-88 327.8 338 60.7
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 2.2e-87 326.6 339 61.7
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 2.8e-87 326.2 327 61.8
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 2.8e-87 326.2 339 56.3
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 1.8e-86 323.6 332 59.3
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 4.1e-86 322.4 333 59.5
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 1.2e-85 320.9 332 57.8
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.3e-84 317.4 332 59.0
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.3e-84 317.4 329 55.0
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 3.8e-84 315.8 332 59.0
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 5.0e-84 315.5 331 52.0
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 3.6e-82 309.3 332 56.9
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 3.6e-82 309.3 334 56.9
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 4.7e-82 308.9 395 45.8
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 8.0e-82 308.1 332 54.2
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.4e-81 307.4 332 54.5
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 1.2e-80 304.3 320 59.4
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 5.7e-80 302.0 337 52.2
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.7e-79 300.4 332 52.4
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 3.1e-78 296.2 332 48.5
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 5.9e-77 292.0 319 52.7
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 1.0e-76 291.2 395 44.3
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 2.2e-76 290.0 332 52.7
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.2e-76 290.0 309 57.9
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 3.8e-76 289.3 286 61.2
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 3.2e-75 286.2 389 50.9
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 5.5e-75 285.4 340 51.8
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 7.2e-75 285.0 332 48.5
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 1.6e-74 283.9 332 48.5
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 3.6e-74 282.7 404 46.3
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 6.1e-74 282.0 332 52.7
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.4e-73 280.8 323 51.4
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 3.0e-73 279.6 331 49.8
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 8.8e-73 278.1 269 58.4
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 4.4e-72 275.8 332 50.9
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 4.4e-72 275.8 348 50.3
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 5.7e-72 275.4 332 53.3
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 1.7e-71 273.9 332 56.3
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 3.7e-71 272.7 332 47.3
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 3.1e-70 269.6 322 49.7
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 4.5e-69 265.8 332 46.1
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 5.9e-69 265.4 332 52.1
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 3.3e-67 259.6 308 50.3
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 7.2e-67 258.5 332 50.9
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 9.5e-67 258.1 332 44.0
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 1.5e-64 250.8 275 51.6
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.3e-63 247.7 324 45.7
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 2.8e-63 246.5 370 42.4
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 3.7e-63 246.1 336 49.4
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 3.7e-63 246.1 320 48.4
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 4.1e-62 242.7 320 50.0
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 3.5e-61 239.6 329 47.1
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 4.5e-61 239.2 324 47.8
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 2.3e-60 236.9 389 40.4
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 1.1e-59 234.6 341 42.8
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 1.1e-59 234.6 358 43.0
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 2.1e-58 230.3 267 48.3
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 3.6e-58 229.6 339 43.4
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 8.0e-58 228.4 311 49.8
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.0e-57 228.0 263 55.9
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 1.4e-57 227.6 277 46.2
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.3e-57 226.9 329 46.2
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 6.8e-57 225.3 332 42.5
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 4.4e-56 222.6 331 47.7
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 4.4e-56 222.6 354 41.2
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 9.8e-56 221.5 311 48.9
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 4.9e-55 219.2 262 54.6
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 7.0e-54 215.3 312 46.2
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 2.0e-53 213.8 332 47.0
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 1.3e-52 211.1 333 47.1
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 2.3e-52 210.3 301 45.2
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 1.1e-51 208.0 333 45.3
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 2.5e-51 206.8 335 46.9
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 2.8e-50 203.4 305 42.0
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 6.2e-50 202.2 296 45.6
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 8.0e-50 201.8 296 41.6
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 1.8e-49 200.7 363 43.8
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 3.1e-49 199.9 296 46.6
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 3.1e-49 199.9 364 37.9
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 7.5e-48 195.3 196 54.1
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.2e-47 193.7 312 45.8
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 2.2e-47 193.7 299 45.5
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 1.1e-46 191.4 329 40.4
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 1.1e-46 191.4 329 40.4
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 4.1e-46 189.5 177 58.2
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.6e-45 187.6 181 56.9
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 2.1e-45 187.2 333 40.5
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 3.5e-45 186.4 313 44.4
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 3.5e-45 186.4 304 39.5
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.8e-41 174.1 183 56.3
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 3.1e-41 173.3 210 45.7
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 5.8e-40 169.1 156 55.8
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 2.9e-39 166.8 123 65.9
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 7.1e-38 162.2 318 38.7
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 9.2e-38 161.8 370 32.4
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 1.2e-37 161.4 328 35.7
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 8.6e-36 155.2 263 46.0
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 3.3e-35 153.3 112 70.5
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 4.3e-35 152.9 277 43.0
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 4.0e-33 146.4 127 61.4
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.3e-31 141.4 112 61.6
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 1.4e-30 137.9 135 60.0
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 4.2e-30 136.3 175 48.0
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 5.4e-30 136.0 225 39.1
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 5.4e-30 136.0 124 58.9
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 2.7e-29 133.7 136 58.8
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.0e-28 130.2 168 42.9
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.0e-28 130.2 168 42.9
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.9e-27 127.5 374 28.6
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 2.5e-27 127.1 311 31.5
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 4.3e-27 126.3 125 53.6
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 2.1e-26 124.0 154 40.3
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 9.0e-25 118.6 291 35.4
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 3.4e-24 116.7 265 33.6
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.7e-20 104.4 292 32.5
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 1.1e-19 101.7 295 32.9
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 3.3e-19 100.1 193 38.3
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 6.2e-18 95.9 48 91.7
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 6.2e-18 95.9 282 33.0
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 5.3e-17 92.8 106 51.9
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 1.5e-16 91.3 325 28.3
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 2.6e-16 90.5 77 57.1
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 3.4e-16 90.1 125 40.8
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 3.4e-16 90.1 125 40.8
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 1.6e-13 81.3 84 51.2
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.1e-11 75.1 113 39.8
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 1.6e-10 71.2 100 52.0
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 2.4e-09 67.4 51 60.8
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 9.0e-09 65.5 123 37.4
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 9.0e-09 65.5 123 37.4
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 1.5e-08 64.7 195 29.2
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 3.4e-08 63.5 60 53.3
RcHm_v2.0_Chr5g0049341 Rosa chinensis HOM05D003707 ORTHO05D004309 9.9e-08 62.0 91 47.3
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 2.9e-07 60.5 221 28.5
MBI12_g20562_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.2e-06 57.0 34 79.4
Mapoly0003s0015 Marchantia polymorpha HOM05D019185 ORTHO05D030113 9.3e-06 55.5 89 39.3


User provided reference genes

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