Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g22100 Coffea canephora HOM05D003190 ORTHO05D003745 1.4e-26 122.1 57 100.0
Ca_08071_v3 Cicer arietinum L. HOM05D003190 ORTHO05D003745 9.3e-15 82.8 40 92.5
Cc02_g25080 Coffea canephora HOM05D003190 ORTHO05D003745 1.2e-14 82.4 39 94.9
Cpa.g.sc101.14 Carica papaya HOM05D003190 ORTHO05D003745 1.6e-14 82.0 40 92.5
Manes.01G272900 Manihot esculenta HOM05D003190 ORTHO05D003745 1.6e-14 82.0 40 90.0
Manes.05G054500 Manihot esculenta HOM05D003190 ORTHO05D003745 1.6e-14 82.0 40 90.0
Potri.002G137400 Populus trichocarpa HOM05D003190 ORTHO05D003745 1.6e-14 82.0 40 90.0
Potri.014G047200 Populus trichocarpa HOM05D003190 ORTHO05D003745 1.6e-14 82.0 40 90.0
Ah.05g177860 Amaranthus hybridus HOM05D003190 ORTHO05D003745 2.1e-14 81.6 40 90.0
MELO3C022274.2 Cucumis melo HOM05D003190 ORTHO05D003745 2.7e-14 81.3 40 90.0
CsaV3_6G008580 Cucumis sativus L. HOM05D003190 ORTHO05D003745 2.7e-14 81.3 40 90.0
CiPaw.14G020800 Carya illinoinensis HOM05D003190 ORTHO05D003745 3.6e-14 80.9 40 90.0
Ciclev10021825m.g Citrus clementina HOM05D003190 ORTHO05D003745 3.6e-14 80.9 40 90.0
Gohir.A11G075600 Gossypium hirsutum HOM05D003190 ORTHO05D003745 3.6e-14 80.9 40 90.0
Gohir.A12G096900 Gossypium hirsutum HOM05D003190 ORTHO05D003745 3.6e-14 80.9 40 90.0
Gohir.D11G080200 Gossypium hirsutum HOM05D003190 ORTHO05D003745 3.6e-14 80.9 40 90.0
Gohir.D12G099800 Gossypium hirsutum HOM05D003190 ORTHO05D003745 3.6e-14 80.9 40 90.0
Gorai.007G085900 Gossypium raimondii HOM05D003190 ORTHO05D003745 3.6e-14 80.9 40 90.0
Gorai.008G108700 Gossypium raimondii HOM05D003190 ORTHO05D003745 3.6e-14 80.9 40 90.0
Lj1g0027839 Lotus japonicus HOM05D003190 ORTHO05D003745 3.6e-14 80.9 40 90.0
Medtr7g081735 Medicago truncatula HOM05D003190 ORTHO05D003745 3.6e-14 80.9 40 90.0
Nn1g00857 Nelumbo nucifera HOM05D003190 ORTHO05D003745 3.6e-14 80.9 40 87.5
Psat3g098680 Pisum sativum HOM05D003190 ORTHO05D003745 3.6e-14 80.9 40 90.0
QL02p060801 Quercus lobata HOM05D003190 ORTHO05D003745 3.6e-14 80.9 40 90.0
QL04p030379 Quercus lobata HOM05D003190 ORTHO05D003745 3.6e-14 80.9 40 90.0
Sabra14G0034200 Salix brachista HOM05D003190 ORTHO05D003745 3.6e-14 80.9 40 87.5
Thecc.01G394400 Theobroma cacao HOM05D003190 ORTHO05D003745 3.6e-14 80.9 40 90.0
CSS0044756 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D003745 4.6e-14 80.5 39 92.3
TPR.G14100 Trifolium pratense HOM05D003190 ORTHO05D003745 4.6e-14 80.5 40 90.0
Glyma.13G187200 Glycine max HOM05D003190 ORTHO05D003745 6.1e-14 80.1 40 90.0
TWI59G1064 Tripterygium wilfordii HOM05D003190 ORTHO05D003745 6.1e-14 80.1 40 85.0
vmacro21057 Vaccinium macrocarpon HOM05D003190 ORTHO05D003745 6.1e-14 80.1 39 89.7
VMungo1127G1897 Vigna mungo HOM05D003190 ORTHO05D003745 6.1e-14 80.1 40 90.0
Atru.chr5.131 Acer truncatum HOM05D003190 ORTHO05D003745 7.9e-14 79.7 40 87.5
Actinidia02786 Actinidia chinensis HOM05D003190 ORTHO05D003745 7.9e-14 79.7 40 90.0
Nn6g33831 Nelumbo nucifera HOM05D003190 ORTHO05D003745 7.9e-14 79.7 40 87.5
TWI14G0166 Tripterygium wilfordii HOM05D003190 ORTHO05D003745 7.9e-14 79.7 40 85.0
Actinidia12147 Actinidia chinensis HOM05D003190 ORTHO05D003745 1.0e-13 79.3 39 89.7
Actinidia26682 Actinidia chinensis HOM05D003190 ORTHO05D003745 1.0e-13 79.3 39 89.7
CSS0020681 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D003745 1.0e-13 79.3 39 89.7
ClCG06G002540 Citrullus lanatus HOM05D003190 ORTHO05D003745 1.0e-13 79.3 40 87.5
Duzib133G1461 Durio zibethinus HOM05D003190 ORTHO05D003745 1.0e-13 79.3 39 92.3
Eucgr.D01237 Eucalyptus grandis HOM05D003190 ORTHO05D003745 1.0e-13 79.3 40 87.5
Eucgr.L01589 Eucalyptus grandis HOM05D003190 ORTHO05D003745 1.0e-13 79.3 40 87.5
PGR042G3195 Punica granatum HOM05D003190 ORTHO05D003745 1.0e-13 79.3 40 87.5
Sp6g00030 Schrenkiella parvula HOM05D003190 ORTHO05D003745 1.0e-13 79.3 42 81.0
GSVIVG01018273001 Vitis vinifera HOM05D003190 ORTHO05D003745 1.0e-13 79.3 40 90.0
arahy.Tifrunner.gnm1.ann1.9AB492 Arachis hypogaea HOM05D003190 ORTHO05D003745 1.4e-13 79.0 40 87.5
arahy.Tifrunner.gnm1.ann1.WK7TVH Arachis hypogaea HOM05D003190 ORTHO05D003745 1.4e-13 79.0 40 87.5
CiPaw.13G026700 Carya illinoinensis HOM05D003190 ORTHO05D003745 1.4e-13 79.0 40 87.5
Dinv43620 Davidia involucrata HOM05D003190 ORTHO05D003745 1.4e-13 79.0 39 87.2
Migut.N01739 Erythranthe guttata HOM05D003190 ORTHO05D003745 1.4e-13 79.0 39 89.7
PSO063G4643 Papaver somniferum HOM05D003190 ORTHO05D003745 1.4e-13 79.0 40 90.0
SalBow5G0141 Salvia bowleyana HOM05D003190 ORTHO05D003745 1.4e-13 79.0 39 89.7
Hund27406 Selenicereus undatus HOM05D003190 ORTHO05D003745 1.4e-13 79.0 40 85.0
Aa31LG5G50 Aethionema arabicum HOM05D003190 ORTHO05D003745 1.8e-13 78.6 41 85.4
MSTRG.17130 Avicennia marina HOM05D003190 ORTHO05D003745 1.8e-13 78.6 39 87.2
EL10Ac1g00758 Beta vulgaris HOM05D003190 ORTHO05D003745 1.8e-13 78.6 40 87.5
CANSAT21G0456 Cannabis sativa HOM05D003190 ORTHO05D003745 1.8e-13 78.6 40 87.5
CANSAT21G1264 Cannabis sativa HOM05D003190 ORTHO05D003745 1.8e-13 78.6 40 87.5
Cfa011075 Carpinus fangiana HOM05D003190 ORTHO05D003745 1.8e-13 78.6 40 87.5
Haze_02841 Corylus avellana HOM05D003190 ORTHO05D003745 1.8e-13 78.6 40 87.5
Lsat_1_v5_gn_4_39820 Lactuca sativa HOM05D003190 ORTHO05D003745 1.8e-13 78.6 39 89.7
Lj7C545T16 Lonicera japonica HOM05D003190 ORTHO05D003745 1.8e-13 78.6 39 89.7
Duzib138G0899 Durio zibethinus HOM05D003190 ORTHO05D003745 2.3e-13 78.2 39 89.7
Glyma.15G224900 Glycine max HOM05D003190 ORTHO05D003745 2.3e-13 78.2 40 87.5
Phvul.011G190600 Phaseolus vulgaris HOM05D003190 ORTHO05D003745 2.3e-13 78.2 40 87.5
ECA234G0556 Erigeron canadensis HOM05D003190 ORTHO05D003745 3.0e-13 77.8 39 87.2
MD02G1211700 Malus domestica HOM05D003190 ORTHO05D003745 3.0e-13 77.8 40 85.0
Oeu020085.3 Olea europaea HOM05D003190 ORTHO05D003745 3.0e-13 77.8 39 87.2
Rhsim07G0035600 Rhododendron simsii HOM05D003190 ORTHO05D003745 3.0e-13 77.8 40 90.0
THA.LOC104814067 Tarenaya hassleriana HOM05D003190 ORTHO05D003745 3.0e-13 77.8 40 85.0
HanXRQChr06g0167931 Helianthus annuus HOM05D003190 ORTHO05D003745 3.9e-13 77.4 39 87.2
HanXRQChr13g0414471 Helianthus annuus HOM05D003190 ORTHO05D003745 3.9e-13 77.4 39 87.2
Nitab4.5_0012667g0010 Nicotiana tabacum HOM05D003190 ORTHO05D003745 3.9e-13 77.4 39 84.6
Solyc01g090290.4 Solanum lycopersicum HOM05D003190 ORTHO05D003745 3.9e-13 77.4 39 84.6
Sopen01g036080 Solanum pennellii HOM05D003190 ORTHO05D003745 3.9e-13 77.4 39 84.6
PGSC0003DMG400026050 Solanum tuberosum HOM05D003190 ORTHO05D003745 3.9e-13 77.4 39 84.6
BolC8t52924H Brassica oleracea HOM05D003190 ORTHO05D003745 5.1e-13 77.0 41 82.9
BraA09t42279Z Brassica rapa HOM05D003190 ORTHO05D003745 5.1e-13 77.0 41 82.9
Lalb_Chr03g0040361 Lupinus albus HOM05D003190 ORTHO05D003745 5.1e-13 77.0 40 85.0
Lalb_Chr19g0126531 Lupinus albus HOM05D003190 ORTHO05D003745 5.1e-13 77.0 40 85.0
AT1G02090 Arabidopsis thaliana HOM05D003190 ORTHO05D003745 6.7e-13 76.6 40 82.5
BcaC07g42340 Brassica carinata HOM05D003190 ORTHO05D003745 6.7e-13 76.6 40 82.5
BcaC07g42436 Brassica carinata HOM05D003190 ORTHO05D003745 6.7e-13 76.6 40 82.5
A09p69340 Brassica napus HOM05D003190 ORTHO05D003745 6.7e-13 76.6 40 82.5
PSO478G2298 Papaver somniferum HOM05D003190 ORTHO05D003745 6.7e-13 76.6 42 81.0
Sp1g00180 Schrenkiella parvula HOM05D003190 ORTHO05D003745 6.7e-13 76.6 40 82.5
TAR374G0382 Trochodendron aralioides HOM05D003190 ORTHO05D003745 6.7e-13 76.6 40 82.5
CARHR248010 Cardamine hirsuta HOM05D003190 ORTHO05D003745 8.8e-13 76.3 40 82.5
AUR62023404 Chenopodium quinoa HOM05D003190 ORTHO05D003745 8.8e-13 76.3 40 85.0
Sed0021185 Sechium edule HOM05D003190 ORTHO05D003745 8.8e-13 76.3 40 87.5
CAN.G1473.15 Capsicum annuum HOM05D003190 ORTHO05D003745 1.1e-12 75.9 39 82.1
Gohir.D08G040200 Gossypium hirsutum HOM05D003190 ORTHO05D003745 1.1e-12 75.9 40 85.0
Gorai.004G039100 Gossypium raimondii HOM05D003190 ORTHO05D003745 1.1e-12 75.9 40 85.0
Oeu000052.1 Olea europaea HOM05D003190 ORTHO05D003745 1.1e-12 75.9 39 84.6
Oeu063237.1 Olea europaea HOM05D003190 ORTHO05D003745 1.1e-12 75.9 39 84.6
THA.LOC104801488 Tarenaya hassleriana HOM05D003190 ORTHO05D003745 1.1e-12 75.9 39 84.6
TAR375G0928 Trochodendron aralioides HOM05D003190 ORTHO05D003745 1.1e-12 75.9 40 82.5
Actinidia12646 Actinidia chinensis HOM05D003190 ORTHO05D003745 1.5e-12 75.5 39 84.6
MSTRG.20693 Avicennia marina HOM05D003190 ORTHO05D003745 1.5e-12 75.5 39 84.6
CDE12G0792 Ceratophyllum demersum HOM05D003190 ORTHO05D003745 1.5e-12 75.5 40 82.5
DCAR_029466 Daucus carota HOM05D003190 ORTHO05D003745 1.5e-12 75.5 39 87.2
Pp3c15_22100 Physcomitrium patens HOM05D003190 ORTHO05D003745 1.5e-12 75.5 40 85.0
Migut.B01538 Erythranthe guttata HOM05D003190 ORTHO05D003745 1.9e-12 75.1 39 84.6
HanXRQChr02g0039161 Helianthus annuus HOM05D003190 ORTHO05D003745 1.9e-12 75.1 39 84.6
Hma1.2p1_0674F.1_g201530 Hydrangea macrophylla HOM05D003190 ORTHO05D003745 1.9e-12 75.1 39 84.6
MD07G1106400 Malus domestica HOM05D003190 ORTHO05D003745 1.9e-12 75.1 39 82.1
PSO782G2887 Papaver somniferum HOM05D003190 ORTHO05D003745 1.9e-12 75.1 40 87.5
Prupe.2G129800 Prunus persica HOM05D003190 ORTHO05D003745 1.9e-12 75.1 40 82.5
TWI23G0403 Tripterygium wilfordii HOM05D003190 ORTHO05D003745 1.9e-12 75.1 40 80.0
AL1G10140 Arabidopsis lyrata HOM05D003190 ORTHO05D003745 2.5e-12 74.7 40 80.0
BcaB03g14242 Brassica carinata HOM05D003190 ORTHO05D003745 2.5e-12 74.7 40 80.0
BcaC06g34922 Brassica carinata HOM05D003190 ORTHO05D003745 2.5e-12 74.7 40 80.0
A07p14830 Brassica napus HOM05D003190 ORTHO05D003745 2.5e-12 74.7 40 80.0
C07p21780 Brassica napus HOM05D003190 ORTHO05D003745 2.5e-12 74.7 40 80.0
BolC7t42709H Brassica oleracea HOM05D003190 ORTHO05D003745 2.5e-12 74.7 40 80.0
BraA07t29224Z Brassica rapa HOM05D003190 ORTHO05D003745 2.5e-12 74.7 40 80.0
ECA236G0031 Erigeron canadensis HOM05D003190 ORTHO05D003745 2.5e-12 74.7 39 84.6
MD07G1107100 Malus domestica HOM05D003190 ORTHO05D003745 2.5e-12 74.7 40 80.0
SEGI_01663 Sequoiadendron giganteum HOM05D003190 ORTHO05D003745 2.5e-12 74.7 40 82.5
Sc02g0003110 Simmondsia chinensis HOM05D003190 ORTHO05D003745 2.5e-12 74.7 40 82.5
CARHR000240 Cardamine hirsuta HOM05D003190 ORTHO05D003745 3.3e-12 74.3 40 80.0
Dinv44067 Davidia involucrata HOM05D003190 ORTHO05D003745 3.3e-12 74.3 39 84.6
Thhalv10008523m.g Eutrema salsugineum HOM05D003190 ORTHO05D003745 4.3e-12 73.9 40 77.5
RcHm_v2.0_Chr1g0347681 Rosa chinensis HOM05D003190 ORTHO05D003745 4.3e-12 73.9 40 82.5
Aqoxy3G02735 Aquilegia oxysepala HOM05D003190 ORTHO05D003745 5.7e-12 73.6 40 82.5
HanXRQChr13g0393921 Helianthus annuus HOM05D003190 ORTHO05D009990 5.7e-12 73.6 39 82.1
Pp3c9_18560 Physcomitrium patens HOM05D003190 ORTHO05D003745 5.7e-12 73.6 40 82.5
Carub.0001s0013 Capsella rubella HOM05D003190 ORTHO05D003745 7.4e-12 73.2 40 80.0
SMO239G0056 Selaginella moellendorffii HOM05D003190 ORTHO05D003745 7.4e-12 73.2 40 80.0
SGA_v2.0_scaffold52G19224 Striga asiatica HOM05D003190 ORTHO05D003745 7.4e-12 73.2 39 79.5
Thhalv10026057m.g Eutrema salsugineum HOM05D003190 ORTHO05D003745 9.7e-12 72.8 40 77.5
FvH4_7g10110 Fragaria vesca HOM05D003190 ORTHO05D003745 9.7e-12 72.8 40 80.0
FAN01G1555 Fragaria x ananassa HOM05D003190 ORTHO05D003745 9.7e-12 72.8 40 80.0
FAN06G0700 Fragaria x ananassa HOM05D003190 ORTHO05D003745 9.7e-12 72.8 40 80.0
FAN10G1008 Fragaria x ananassa HOM05D003190 ORTHO05D003745 9.7e-12 72.8 40 80.0
FAN10G1064 Fragaria x ananassa HOM05D003190 ORTHO05D003745 9.7e-12 72.8 40 80.0
Os07g0490800 Oryza sativa ssp. japonica HOM05D003190 ORTHO05D003745 9.7e-12 72.8 40 82.5
Peaxi162Scf00475g00516 Petunia axillaris HOM05D003190 ORTHO05D003745 9.7e-12 72.8 39 79.5
Zm00001eb105310 Zea mays HOM05D003190 ORTHO05D003745 9.7e-12 72.8 40 82.5
Aa31LG1G11460 Aethionema arabicum HOM05D003190 ORTHO05D003745 1.3e-11 72.4 39 82.1
CDE04G0635 Ceratophyllum demersum HOM05D003190 ORTHO05D003745 1.7e-11 72.0 40 80.0
Mapoly0041s0006 Marchantia polymorpha HOM05D003190 ORTHO05D003745 1.7e-11 72.0 40 80.0
HPP92_001540 Vanilla planifolia HOM05D000263 ORTHO05D000213 1.7e-11 72.0 40 80.0
Atru.chr9.1248 Acer truncatum HOM05D003190 ORTHO05D003745 2.2e-11 71.6 39 82.1
ATR0057G124 Amborella trichopoda HOM05D003190 ORTHO05D003745 2.2e-11 71.6 40 80.0
AUR62013747 Chenopodium quinoa HOM05D003190 ORTHO05D003745 2.2e-11 71.6 40 80.0
MD00G1221600 Malus domestica HOM05D003190 ORTHO05D003745 2.8e-11 71.2 40 77.5
MD02G1237200 Malus domestica HOM05D003190 ORTHO05D003745 2.8e-11 71.2 40 77.5
MD04G1057800 Malus domestica HOM05D003190 ORTHO05D003745 2.8e-11 71.2 40 77.5
Zm00001eb321750 Zea mays HOM05D003190 ORTHO05D003745 2.8e-11 71.2 40 80.0
Prupe.5G061700 Prunus persica HOM05D003190 ORTHO05D003745 3.7e-11 70.9 40 77.5
Gohir.A08G029500 Gossypium hirsutum HOM05D003190 ORTHO05D003745 6.3e-11 70.1 39 82.1
Lj9A558T43 Lonicera japonica HOM05D003190 ORTHO05D003745 6.3e-11 70.1 39 82.1
Ciclev10021722m.g Citrus clementina HOM05D003190 ORTHO05D003745 1.4e-10 68.9 39 76.9
HanXRQChr02g0046721 Helianthus annuus HOM05D003190 ORTHO05D003745 1.4e-10 68.9 39 79.5
QL12p009727 Quercus lobata HOM05D003190 ORTHO05D003745 1.4e-10 68.9 40 77.5
BcaB03g13632 Brassica carinata HOM05D003190 ORTHO05D003745 1.8e-10 68.6 39 76.9
C05p00090 Brassica napus HOM05D003190 ORTHO05D003745 2.4e-10 68.2 41 73.2
BolC5t28796H Brassica oleracea HOM05D003190 ORTHO05D003745 2.4e-10 68.2 41 73.2
Glyma.18G252100 Glycine max HOM05D003190 ORTHO05D003745 2.4e-10 68.2 40 77.5
SGA_v2.0_scaffold43G16535 Striga asiatica HOM05D003190 ORTHO05D003745 2.4e-10 68.2 56 60.7
GSVIVG01004797001 Vitis vinifera HOM05D003190 ORTHO05D003745 2.4e-10 68.2 40 72.5
C08p54150 Brassica napus HOM05D003190 ORTHO05D003745 6.9e-10 66.6 41 70.7
CBR_g6296 Chara braunii HOM05D000019 ORTHO05D000002 6.9e-10 66.6 40 72.5
Phvul.008G046600 Phaseolus vulgaris HOM05D003190 ORTHO05D003745 6.9e-10 66.6 40 72.5
HanXRQChr09g0239891 Helianthus annuus HOM05D003190 ORTHO05D003745 1.5e-09 65.5 37 78.4
FvH4_5g19860 Fragaria vesca HOM05D003190 ORTHO05D003745 2.6e-09 64.7 39 69.2
FAN04G2686 Fragaria x ananassa HOM05D003190 ORTHO05D003745 2.6e-09 64.7 39 69.2
FAN08G1565 Fragaria x ananassa HOM05D003190 ORTHO05D003745 2.6e-09 64.7 39 69.2
FAN13G1610 Fragaria x ananassa HOM05D003190 ORTHO05D003745 2.6e-09 64.7 39 69.2
vmacro13493 Vaccinium macrocarpon HOM05D003190 ORTHO05D003745 2.6e-09 64.7 39 74.4
RcHm_v2.0_Chr1g0355181 Rosa chinensis HOM05D003190 ORTHO05D003745 3.4e-09 64.3 39 66.7
RcHm_v2.0_Chr7g0204651 Rosa chinensis HOM05D003190 ORTHO05D003745 3.4e-09 64.3 39 66.7
BraA10t42290Z Brassica rapa HOM05D003190 ORTHO05D003745 4.5e-09 63.9 38 73.7
Carub.0006s3723 Capsella rubella HOM05D003190 ORTHO05D003745 4.5e-09 63.9 39 76.9
SGA_v2.0_scaffold153G36905 Striga asiatica HOM05D003190 ORTHO05D003745 5.9e-09 63.5 39 69.2
VMungo0534G0001 Vigna mungo HOM05D003190 ORTHO05D003745 3.8e-08 60.8 40 67.5
TAR629G0358 Trochodendron aralioides HOM05D003190 ORTHO05D003745 1.4e-07 58.9 40 75.0


User provided reference genes

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