Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 0.0e+00 2408.6 1385 100.0
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 4.7e-184 649.8 1623 40.1
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 4.7e-184 649.8 1623 40.1
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 4.7e-184 649.8 1623 40.1
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 5.3e-180 636.3 1495 39.7
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 1.5e-177 628.2 1535 38.6
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 1.0e-175 622.1 1474 39.9
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 3.3e-174 617.1 1697 39.8
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 1.6e-171 608.2 1505 37.5
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 3.4e-166 590.5 1616 36.8
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 1.1e-164 585.5 1506 38.2
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 3.4e-158 563.9 1479 38.3
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 7.3e-153 546.2 1434 37.6
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 1.4e-148 531.9 1546 39.4
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 2.4e-148 531.2 1602 37.7
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 1.6e-147 528.5 1501 37.7
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 9.5e-145 519.2 1459 38.0
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 8.0e-144 516.2 1535 36.2
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 4.1e-140 503.8 1521 35.6
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 7.0e-140 503.1 1523 36.6
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 1.5e-137 495.4 1540 36.4
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 4.3e-137 493.8 1588 35.3
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 2.8e-136 491.1 1521 35.6
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 8.9e-135 486.1 1211 39.8
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.2e-134 485.7 1515 36.4
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 1.1e-132 479.2 1441 36.6
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 1.1e-129 469.2 1581 36.8
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 1.4e-127 462.2 1615 36.1
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 1.5e-126 458.8 1564 36.4
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 1.2e-123 449.1 1636 34.6
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 2.7e-123 448.0 1526 37.6
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 7.8e-123 446.4 1492 36.7
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 3.0e-122 444.5 1162 38.9
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 6.6e-122 443.4 1490 36.8
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 1.1e-121 442.6 1625 36.3
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 1.9e-121 441.8 1517 33.7
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 2.8e-120 438.0 1551 33.6
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 1.1e-119 436.0 1504 34.4
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 6.9e-119 433.3 1463 35.5
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 5.8e-118 430.3 1510 33.4
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 5.8e-118 430.3 1737 35.1
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.3e-117 429.1 1494 34.9
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 6.0e-115 420.2 1552 35.8
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 3.9e-114 417.5 1566 36.8
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 1.3e-109 402.5 1501 36.0
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 1.7e-109 402.1 1570 35.0
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 7.1e-108 396.7 1771 34.0
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 3.9e-106 391.0 1803 34.1
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 4.3e-105 387.5 1430 34.2
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 9.6e-105 386.3 1254 38.8
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 1.6e-104 385.6 1536 35.5
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 3.7e-104 384.4 1447 35.2
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 1.8e-103 382.1 1434 34.9
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 9.9e-102 376.3 1457 33.1
CSS0035455 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 6.4e-101 373.6 1157 34.1
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 1.9e-100 372.1 1750 33.3
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 2.4e-100 371.7 1441 34.4
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 9.3e-100 369.8 1466 35.4
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 1.6e-99 369.0 1440 33.7
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 3.5e-99 367.9 1545 33.9
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 3.9e-98 364.4 1513 32.5
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 5.1e-98 364.0 1499 32.8
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 1.6e-96 359.0 1451 35.4
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 4.8e-96 357.5 1454 34.7
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 4.0e-95 354.4 1464 31.8
PGSC0003DMG400006701 Solanum tuberosum HOM05D005457 ORTHO05D006350 1.2e-94 352.8 1139 36.1
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 6.0e-91 340.5 1462 32.8
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 5.1e-90 337.4 1440 35.5
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 2.1e-88 332.0 1520 33.2
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 1.1e-84 319.7 1053 39.2
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 1.1e-81 309.7 1469 35.3
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 1.9e-81 308.9 1451 32.6
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 8.2e-80 303.5 1430 29.6
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 6.9e-79 300.4 1419 28.8
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 5.9e-78 297.4 1453 35.1
CSS0006949 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 5.0e-77 294.3 1049 32.0
Lj2A1073T53 Lonicera japonica HOM05D005457 ORTHO05D006350 1.4e-74 286.2 1128 31.9
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 3.0e-74 285.0 1430 36.6
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 1.1e-73 283.1 1544 31.5
Lj2C1073G13 Lonicera japonica HOM05D005457 ORTHO05D006350 1.8e-71 275.8 191 68.6
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 5.3e-71 274.2 1442 32.8
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 5.9e-70 270.8 1412 30.3
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 1.3e-69 269.6 1459 33.3
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 8.5e-69 266.9 1430 32.2
TAR623G1178 Trochodendron aralioides HOM05D005457 ORTHO05D006350 2.5e-68 265.4 176 69.9
MELO3C020581.2 Cucumis melo HOM05D005457 ORTHO05D006350 6.7e-66 257.3 1136 30.5
Cpa.g.sc112.89 Carica papaya HOM05D005457 ORTHO05D006350 2.0e-65 255.8 709 46.1
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 6.5e-61 240.7 178 64.6
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 6.5e-61 240.7 179 64.2
Oeu017421.1 Olea europaea HOM05D005457 ORTHO05D006350 2.1e-59 235.7 584 34.2
MBI14_g32924_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 1.8e-58 232.6 140 72.1
Potri.009G040500 Populus trichocarpa HOM05D005457 ORTHO05D006350 6.7e-58 230.7 1167 31.4
Actinidia25123 Actinidia chinensis HOM05D005457 ORTHO05D006350 2.7e-51 208.8 955 29.3
AUR62020069 Chenopodium quinoa HOM05D005457 ORTHO05D006350 2.7e-51 208.8 1046 29.2
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 4.0e-50 204.9 1720 28.3
RcHm_v2.0_Chr5g0067361 Rosa chinensis HOM05D005457 ORTHO05D006350 1.4e-47 196.4 411 37.2
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 1.4e-47 196.4 1688 29.2
A03p11920 Brassica napus HOM05D005457 ORTHO05D006350 2.3e-45 189.1 174 53.4
BolC3t13849H Brassica oleracea HOM05D005457 ORTHO05D006350 5.0e-45 188.0 186 52.7
Eucgr.B02283 Eucalyptus grandis HOM05D005457 ORTHO05D006350 1.0e-42 180.3 1182 28.2
CDE09G0137 Ceratophyllum demersum HOM05D000076 ORTHO05D001377 1.2e-41 176.8 102 69.6
Oeu002456.1 Olea europaea HOM05D005457 ORTHO05D006350 9.8e-41 173.7 728 40.0
Actinidia25125 Actinidia chinensis HOM05D005457 ORTHO05D006350 6.3e-40 171.0 91 79.1
Psat5g196760 Pisum sativum HOM05D005457 ORTHO05D002728 5.9e-38 164.5 149 56.4
Actinidia08557 Actinidia chinensis HOM05D005457 ORTHO05D006350 4.3e-36 158.3 509 30.6
BcaB08g36300 Brassica carinata HOM05D012589 ORTHO05D006350 5.6e-36 157.9 176 46.0
SEGI_21152 Sequoiadendron giganteum HOM05D005457 ORTHO05D006350 1.4e-34 153.3 153 52.9
MBI14_g32923_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 4.4e-33 148.3 613 30.8
BcaB01g04624 Brassica carinata HOM05D005457 ORTHO05D006350 9.8e-33 147.1 123 56.1
BraA03t10504Z Brassica rapa HOM05D005457 ORTHO05D006350 7.0e-31 141.0 190 42.6
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 7.0e-31 141.0 770 28.2
CSS0043795 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.8e-26 126.3 72 72.2
CSS0046602 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.8e-26 126.3 72 72.2
Cpa.g.sc112.91 Carica papaya HOM05D005457 ORTHO05D006350 1.8e-26 126.3 120 55.8
TAR623G1322 Trochodendron aralioides HOM05D005457 ORTHO05D006350 3.1e-26 125.6 393 33.8
Duzib170G0589 Durio zibethinus HOM05D005457 ORTHO05D006350 4.7e-19 101.7 311 32.2
CDE09G0768 Ceratophyllum demersum HOM05D005457 ORTHO05D006350 1.4e-18 100.1 137 46.0
CBR_g29779 Chara braunii HOM05D005457 ORTHO05D006350 2.6e-17 95.9 136 30.9
CBR_g49555 Chara braunii HOM05D005457 ORTHO05D006350 2.6e-17 95.9 140 29.3
CDE02G3816 Ceratophyllum demersum HOM05D034644 ORTHO05D006350 3.4e-17 95.5 490 27.1
Cpa.g.sc112.90 Carica papaya HOM05D005457 ORTHO05D006350 4.4e-17 95.1 668 26.3
unitig_27.g24807 Utricularia gibba HOM05D005457 ORTHO05D006350 1.7e-16 93.2 62 67.7
Actinidia08559 Actinidia chinensis HOM05D005457 ORTHO05D006350 3.2e-15 89.0 92 51.1
Prupe.6G064700 Prunus persica HOM05D005457 ORTHO05D006350 9.2e-15 87.4 507 33.7
CBR_g34581 Chara braunii HOM05D005457 ORTHO05D006350 3.0e-13 82.4 131 29.0
CBR_g34582 Chara braunii HOM05D005457 ORTHO05D006350 8.6e-13 80.9 97 37.1
CBR_g44392 Chara braunii HOM05D005457 ORTHO05D006350 1.5e-12 80.1 114 33.3
unitig_27.g24810 Utricularia gibba HOM05D005457 ORTHO05D006350 9.5e-12 77.4 56 62.5
PGSC0003DMG400009632 Solanum tuberosum HOM05D005457 ORTHO05D006350 1.2e-11 77.0 44 81.8
CBR_g34583 Chara braunii HOM05D005457 ORTHO05D006350 2.1e-11 76.3 96 35.4
Hund18872 Selenicereus undatus HOM05D005457 ORTHO05D006350 1.4e-10 73.6 426 26.5
TAR623G0390 Trochodendron aralioides HOM05D005457 ORTHO05D006350 1.4e-10 73.6 445 26.7


User provided reference genes

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