Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g21840 Coffea canephora HOM05D007159 ORTHO05D009068 6.1e-129 464.2 234 100.0
GSVIVG01004028001 Vitis vinifera HOM05D007159 ORTHO05D009068 5.3e-56 221.9 175 63.4
Medtr3g011770 Medicago truncatula HOM05D007159 ORTHO05D009068 3.4e-55 219.2 166 68.1
Solyc06g061130.4 Solanum lycopersicum HOM05D007159 ORTHO05D009068 3.4e-55 219.2 224 56.2
Manes.11G009800 Manihot esculenta HOM05D007159 ORTHO05D009068 4.5e-55 218.8 166 67.5
PGSC0003DMG402002094 Solanum tuberosum HOM05D007159 ORTHO05D009068 1.0e-54 217.6 224 56.2
Sopen06g021330 Solanum pennellii HOM05D007159 ORTHO05D009068 6.5e-54 214.9 224 55.4
Duzib128G1689 Durio zibethinus HOM05D007159 ORTHO05D009068 1.4e-53 213.8 185 61.1
SalBow5G2583 Salvia bowleyana HOM05D007159 ORTHO05D009068 1.4e-53 213.8 170 66.5
GSVIVG01012409001 Vitis vinifera HOM05D007159 ORTHO05D009068 1.4e-53 213.8 149 69.8
Ciclev10002366m.g Citrus clementina HOM05D007159 ORTHO05D009068 1.9e-53 213.4 173 61.8
Lj3g0023531 Lotus japonicus HOM05D007159 ORTHO05D009068 1.9e-53 213.4 161 70.2
Phvul.005G013300 Phaseolus vulgaris HOM05D007159 ORTHO05D009068 2.5e-53 213.0 166 66.9
COL.COLO4_32863 Corchorus olitorius HOM05D007159 ORTHO05D009068 5.5e-53 211.8 136 75.0
VMungo1080G1031 Vigna mungo HOM05D007159 ORTHO05D009068 5.5e-53 211.8 155 69.7
GSVIVG01012445001 Vitis vinifera HOM05D007159 ORTHO05D009068 5.5e-53 211.8 149 69.1
arahy.Tifrunner.gnm1.ann1.XLH660 Arachis hypogaea HOM05D007159 ORTHO05D009068 7.2e-53 211.5 136 75.7
QL04p022349 Quercus lobata HOM05D007159 ORTHO05D009068 7.2e-53 211.5 136 75.0
CiPaw.13G018000 Carya illinoinensis HOM05D007159 ORTHO05D009068 9.3e-53 211.1 167 66.5
TPR.G30403 Trifolium pratense HOM05D007159 ORTHO05D009068 9.3e-53 211.1 161 68.9
Glyma.04G126100 Glycine max HOM05D007159 ORTHO05D009068 2.7e-52 209.5 166 65.7
GSVIVG01004020001 Vitis vinifera HOM05D007159 ORTHO05D009068 2.7e-52 209.5 149 68.5
Thecc.10G133500 Theobroma cacao HOM05D007159 ORTHO05D009068 3.6e-52 209.1 136 72.1
TWI63G1065 Tripterygium wilfordii HOM05D007159 ORTHO05D009068 1.3e-51 207.2 177 59.3
MD02G1270600 Malus domestica HOM05D007159 ORTHO05D009068 1.8e-51 206.8 162 66.0
Nitab4.5_0000256g0440 Nicotiana tabacum HOM05D007159 ORTHO05D009068 1.8e-51 206.8 225 54.7
Nitab4.5_0006066g0020 Nicotiana tabacum HOM05D007159 ORTHO05D009068 1.8e-51 206.8 130 77.7
RcHm_v2.0_Chr3g0462781 Rosa chinensis HOM05D007159 ORTHO05D009068 1.8e-51 206.8 160 66.2
Potri.003G190101 Populus trichocarpa HOM05D007159 ORTHO05D009068 3.0e-51 206.1 173 63.0
Hund06845 Selenicereus undatus HOM05D007159 ORTHO05D009068 8.7e-51 204.5 173 59.0
Psat5g224840 Pisum sativum HOM05D007159 ORTHO05D009068 1.5e-50 203.8 180 61.7
Lalb_Chr18g0048161 Lupinus albus HOM05D007159 ORTHO05D009068 3.3e-50 202.6 161 67.7
Migut.B01174 Erythranthe guttata HOM05D007159 ORTHO05D009068 4.3e-50 202.2 227 53.7
Eucgr.G03186 Eucalyptus grandis HOM05D007159 ORTHO05D009068 5.7e-50 201.8 166 62.7
MSTRG.20491 Avicennia marina HOM05D007159 ORTHO05D009068 9.7e-50 201.1 170 63.5
Gohir.D10G199566 Gossypium hirsutum HOM05D007159 ORTHO05D009068 4.8e-49 198.7 124 76.6
Gohir.A10G191800 Gossypium hirsutum HOM05D007159 ORTHO05D009068 6.3e-49 198.4 154 66.9
SGA_v2.0_scaffold141G35535 Striga asiatica HOM05D007159 ORTHO05D009068 6.3e-49 198.4 148 67.6
THA.LOC104824199 Tarenaya hassleriana HOM05D007159 ORTHO05D009068 6.3e-49 198.4 177 60.5
BcaNung04831 Brassica carinata HOM05D007159 ORTHO05D009068 8.2e-49 198.0 127 74.0
A03p21540 Brassica napus HOM05D007159 ORTHO05D009068 1.4e-48 197.2 133 72.2
BraA03t11390Z Brassica rapa HOM05D007159 ORTHO05D009068 1.8e-48 196.8 133 71.4
FAN14G5227 Fragaria x ananassa HOM05D007159 ORTHO05D009068 1.8e-48 196.8 148 70.9
C03p25530 Brassica napus HOM05D007159 ORTHO05D009068 4.1e-48 195.7 210 51.4
BolC3t14940H Brassica oleracea HOM05D007159 ORTHO05D009068 4.1e-48 195.7 133 70.7
FAN02G0787 Fragaria x ananassa HOM05D007159 ORTHO05D009068 4.1e-48 195.7 223 52.0
CARHR133370 Cardamine hirsuta HOM05D007159 ORTHO05D009068 5.3e-48 195.3 136 69.1
Rhsim08G0052600 Rhododendron simsii HOM05D007159 ORTHO05D009068 6.9e-48 194.9 190 55.3
Gorai.011G223700 Gossypium raimondii HOM05D007159 ORTHO05D009068 9.1e-48 194.5 142 66.9
Sp4g21050 Schrenkiella parvula HOM05D007159 ORTHO05D009068 1.5e-47 193.7 172 58.7
Carub.0004s2069 Capsella rubella HOM05D007159 ORTHO05D009068 2.0e-47 193.4 188 56.9
FvH4_6g11251 Fragaria vesca HOM05D007159 ORTHO05D009068 2.6e-47 193.0 223 52.5
HPP92_004369 Vanilla planifolia HOM05D007159 ORTHO05D009068 2.6e-47 193.0 170 58.8
ATR0598G156 Amborella trichopoda HOM05D007159 ORTHO05D009068 4.5e-47 192.2 163 61.3
TAR623G0509 Trochodendron aralioides HOM05D007159 ORTHO05D009068 4.5e-47 192.2 200 52.5
Nn2g14588 Nelumbo nucifera HOM05D007159 ORTHO05D009068 5.9e-47 191.8 180 57.2
AT2G38695 Arabidopsis thaliana HOM05D007159 ORTHO05D009068 7.7e-47 191.4 162 60.5
AUR62035525 Chenopodium quinoa HOM05D007159 ORTHO05D009068 7.7e-47 191.4 174 56.9
PGR031G3393 Punica granatum HOM05D007159 ORTHO05D009068 7.7e-47 191.4 213 50.2
Thhalv10017229m.g Eutrema salsugineum HOM05D007159 ORTHO05D009068 1.3e-46 190.7 159 61.6
FAN14G2984 Fragaria x ananassa HOM05D007159 ORTHO05D009068 1.3e-46 190.7 229 51.1
Zm00001eb314250 Zea mays HOM05D007159 ORTHO05D009068 2.2e-46 189.9 159 62.9
AL4G35990 Arabidopsis lyrata HOM05D007159 ORTHO05D009068 3.8e-46 189.1 173 57.2
Aqoxy1G00016 Aquilegia oxysepala HOM05D007159 ORTHO05D009068 1.9e-45 186.8 126 69.0
PSO339G3610 Papaver somniferum HOM05D007159 ORTHO05D009068 4.2e-45 185.7 169 56.2
Actinidia35758 Actinidia chinensis HOM05D007159 ORTHO05D009068 6.1e-44 181.8 167 56.9
Aa31sc689G20 Aethionema arabicum HOM05D007159 ORTHO05D009068 1.1e-42 177.6 162 58.0
Aa31sc26G60 Aethionema arabicum HOM05D007159 ORTHO05D009068 1.5e-42 177.2 143 64.3
ClCG11G012910 Citrullus lanatus HOM05D007159 ORTHO05D009068 1.5e-42 177.2 120 71.7
Lsat_1_v5_gn_7_31321 Lactuca sativa HOM05D007159 ORTHO05D009068 1.7e-41 173.7 117 69.2
EL10Ac4g08838 Beta vulgaris HOM05D007159 ORTHO05D009068 1.8e-40 170.2 142 62.7
SEGI_36712 Sequoiadendron giganteum HOM05D007159 ORTHO05D009068 3.1e-40 169.5 164 58.5
CsaV3_5G029340 Cucumis sativus L. HOM05D007159 ORTHO05D009068 2.6e-39 166.4 146 61.6
AagrBONN_evm.TU.Sc2ySwM_344.1718 Anthoceros agrestis HOM05D007159 ORTHO05D009068 6.5e-38 161.8 130 60.8
arahy.Tifrunner.gnm1.ann1.T46YUH Arachis hypogaea HOM05D007159 ORTHO05D009068 6.5e-38 161.8 139 59.7
Dinv23933 Davidia involucrata HOM05D007159 ORTHO05D009068 4.2e-37 159.1 151 59.6
ECA236G3649 Erigeron canadensis HOM05D007159 ORTHO05D009068 7.2e-37 158.3 161 51.6
Mapoly0102s0032 Marchantia polymorpha HOM05D007159 ORTHO05D009068 2.1e-36 156.8 162 53.7
Peaxi162Scf00615g00514 Petunia axillaris HOM05D007159 ORTHO05D009068 4.7e-36 155.6 91 82.4
SMO137G0134 Selaginella moellendorffii HOM05D007159 ORTHO05D009068 1.0e-35 154.5 121 62.0
HanXRQChr15g0480981 Helianthus annuus HOM05D007159 ORTHO05D009068 1.1e-34 151.0 135 55.6
Ah.06g191300 Amaranthus hybridus HOM05D007159 ORTHO05D009068 1.7e-33 147.1 195 45.6
CBR_g8263 Chara braunii HOM05D007159 ORTHO05D009068 8.2e-33 144.8 121 61.2
DCAR_001925 Daucus carota HOM05D007159 ORTHO05D009068 2.4e-32 143.3 98 68.4
Actinidia39400 Actinidia chinensis HOM05D007159 ORTHO05D009068 4.5e-31 139.0 136 54.4
Sc09g0004690 Simmondsia chinensis HOM05D007159 ORTHO05D009068 4.5e-31 139.0 92 73.9
GSVIVG01012423001 Vitis vinifera HOM05D007159 ORTHO05D009068 1.3e-30 137.5 83 79.5
AUR62041642 Chenopodium quinoa HOM05D007159 ORTHO05D009068 2.5e-29 133.3 124 55.6
GSVIVG01012347001 Vitis vinifera HOM05D007159 ORTHO05D009068 2.7e-28 129.8 94 68.1
GSVIVG01012437001 Vitis vinifera HOM05D007159 ORTHO05D009068 1.4e-27 127.5 149 48.3
Prupe.2G049700 Prunus persica HOM05D007159 ORTHO05D009068 1.8e-27 127.1 109 59.6
MELO3C034053.2 Cucumis melo HOM05D007159 ORTHO05D009068 4.0e-27 125.9 165 48.5
FAN05G1155 Fragaria x ananassa HOM05D007159 ORTHO05D009068 2.0e-26 123.6 168 47.0
Aa31sc19G60 Aethionema arabicum HOM05D007159 ORTHO05D009068 7.5e-26 121.7 83 72.3
Oeu058665.1 Olea europaea HOM05D007159 ORTHO05D009068 2.2e-25 120.2 70 77.1
Sed0014969 Sechium edule HOM05D007159 ORTHO05D009068 3.1e-24 116.3 104 60.6
unitig_749.g13795 Utricularia gibba HOM05D007159 ORTHO05D009068 1.7e-22 110.5 80 68.8
QL04p022306 Quercus lobata HOM05D007159 ORTHO05D009068 1.2e-20 104.4 92 59.8
FAN09G0838 Fragaria x ananassa HOM05D007159 ORTHO05D009068 1.2e-18 97.8 147 44.2
Atru.chr12.1193 Acer truncatum HOM05D007159 ORTHO05D009068 7.0e-16 88.6 49 85.7
Sed0016161 Sechium edule HOM05D007159 ORTHO05D009068 2.9e-14 83.2 70 62.9
PRCOL_00002415 Prasinoderma coloniale HOM05D007159 ORTHO05D009068 5.0e-14 82.4 124 43.5
CANSAT78G1490 Cannabis sativa HOM05D007159 ORTHO05D009068 1.5e-13 80.9 116 43.1
Glyma.06G312500 Glycine max HOM05D007159 ORTHO05D009068 5.5e-13 79.0 63 58.7
MCO13G186 Micromonas commoda HOM05D007159 ORTHO05D009068 1.0e-11 74.7 124 38.7
Haze_02958 Corylus avellana HOM05D007159 ORTHO05D009068 3.4e-10 69.7 90 50.0
Mapoly0065s0044 Marchantia polymorpha HOM05D009116 ORTHO05D011299 7.0e-08 62.0 156 30.1
Os04g0600100 Oryza sativa ssp. japonica HOM05D009116 ORTHO05D011299 1.2e-07 61.2 121 32.2
Ciclev10012634m.g Citrus clementina HOM05D009116 ORTHO05D011299 7.8e-07 58.5 166 26.5
Nitab4.5_0000115g0230 Nicotiana tabacum HOM05D009116 ORTHO05D011299 7.8e-07 58.5 167 28.1
QL04p022221 Quercus lobata HOM05D000002 ORTHO05D000001 1.7e-06 57.4 96 43.8
CAN.G65.136 Capsicum annuum HOM05D009116 ORTHO05D011299 2.3e-06 57.0 141 30.5
MSTRG.26944 Avicennia marina HOM05D009116 ORTHO05D011299 3.8e-06 56.2 173 27.7
Nitab4.5_0003012g0090 Nicotiana tabacum HOM05D009116 ORTHO05D011299 3.8e-06 56.2 159 28.9
Oeu038114.2 Olea europaea HOM05D002675 ORTHO05D003322 5.0e-06 55.8 155 28.4
unitig_52.g17699 Utricularia gibba HOM05D009116 ORTHO05D011299 5.0e-06 55.8 117 29.9


User provided reference genes

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