Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g21820 Coffea canephora HOM05D005578 ORTHO05D006969 6.3e-185 650.6 322 100.0
Cc00_g24800 Coffea canephora HOM05D005578 ORTHO05D006969 1.6e-156 556.2 280 97.9
Cc03_g13760 Coffea canephora HOM05D005578 ORTHO05D006969 2.2e-129 466.1 230 100.0
Dinv33195 Davidia involucrata HOM05D005578 ORTHO05D006969 1.0e-102 377.5 316 59.8
Actinidia27108 Actinidia chinensis HOM05D005578 ORTHO05D006969 6.7e-102 374.8 316 58.9
Rhsim09G0010700 Rhododendron simsii HOM05D005578 ORTHO05D006969 1.5e-101 373.6 280 64.3
Hma1.2p1_0150F.1_g066670 Hydrangea macrophylla HOM05D005578 ORTHO05D006969 3.3e-101 372.5 316 57.9
GSVIVG01038127001 Vitis vinifera HOM05D005578 ORTHO05D006969 4.4e-101 372.1 316 59.2
vmacro00704 Vaccinium macrocarpon HOM05D005578 ORTHO05D006969 1.1e-99 367.5 317 57.7
CSS0020752 Camellia sinensis var. sinensis HOM05D005578 ORTHO05D006969 7.0e-99 364.8 316 57.9
Hund00394 Selenicereus undatus HOM05D005578 ORTHO05D006969 9.1e-99 364.4 281 64.1
CSS0036062 Camellia sinensis var. sinensis HOM05D005578 ORTHO05D006969 1.2e-98 364.0 316 57.9
CSS0022855 Camellia sinensis var. sinensis HOM05D005578 ORTHO05D006969 2.6e-98 362.8 296 61.5
CSS0000228 Camellia sinensis var. sinensis HOM05D005578 ORTHO05D006969 4.5e-98 362.1 316 57.6
DCAR_028436 Daucus carota HOM05D005578 ORTHO05D006969 5.9e-98 361.7 316 57.9
QL10p053362 Quercus lobata HOM05D005578 ORTHO05D006969 3.8e-97 359.0 280 63.2
QL10p054496 Quercus lobata HOM05D005578 ORTHO05D006969 3.8e-97 359.0 280 63.2
Atru.chr4.1387 Acer truncatum HOM05D005578 ORTHO05D006969 2.5e-96 356.3 316 58.2
Haze_01375 Corylus avellana HOM05D005578 ORTHO05D006969 4.2e-96 355.5 280 62.5
TWI63G0500 Tripterygium wilfordii HOM05D005578 ORTHO05D006969 5.5e-96 355.1 280 63.9
Manes.04G036900 Manihot esculenta HOM05D005578 ORTHO05D006969 2.7e-95 352.8 305 59.3
TAR365G0588 Trochodendron aralioides HOM05D005578 ORTHO05D006969 3.6e-95 352.4 321 56.1
Duzib084G0701 Durio zibethinus HOM05D005578 ORTHO05D006969 3.0e-94 349.4 316 58.9
PSO017G0139 Papaver somniferum HOM05D005578 ORTHO05D006969 4.0e-94 349.0 287 59.9
Sabra06G0097900 Salix brachista HOM05D005578 ORTHO05D006969 4.0e-94 349.0 316 57.0
CAN.G128.150 Capsicum annuum HOM05D005578 ORTHO05D006969 1.1e-93 347.4 280 61.4
HanXRQChr02g0059791 Helianthus annuus HOM05D005578 ORTHO05D006969 1.5e-93 347.1 280 63.6
Peaxi162Scf00568g00519 Petunia axillaris HOM05D005578 ORTHO05D006969 1.5e-93 347.1 280 60.4
Nitab4.5_0000387g0110 Nicotiana tabacum HOM05D005578 ORTHO05D006969 3.3e-93 345.9 282 61.3
Glyma.15G008200 Glycine max HOM05D005578 ORTHO05D006969 4.4e-93 345.5 318 56.9
SalBow4G1988 Salvia bowleyana HOM05D005578 ORTHO05D006969 4.4e-93 345.5 276 62.7
Lalb_Chr10g0096771 Lupinus albus HOM05D005578 ORTHO05D006969 7.5e-93 344.7 318 56.9
SalBow4G1580 Salvia bowleyana HOM05D005578 ORTHO05D006969 9.7e-93 344.4 276 63.0
MSTRG.28018 Avicennia marina HOM05D005578 ORTHO05D006969 1.7e-92 343.6 280 60.7
Nitab4.5_0002087g0070 Nicotiana tabacum HOM05D005578 ORTHO05D006969 1.7e-92 343.6 281 61.2
PGR083G2150 Punica granatum HOM05D005578 ORTHO05D006969 2.2e-92 343.2 278 62.9
Sopen10g032050 Solanum pennellii HOM05D005578 ORTHO05D006969 2.2e-92 343.2 280 58.9
EL10Ac9g22122 Beta vulgaris HOM05D005578 ORTHO05D006969 2.8e-92 342.8 281 59.4
Eucgr.A00019 Eucalyptus grandis HOM05D005578 ORTHO05D006969 2.8e-92 342.8 314 56.4
Phvul.005G177500 Phaseolus vulgaris HOM05D005578 ORTHO05D006969 3.7e-92 342.4 318 56.3
PSO675G5381 Papaver somniferum HOM05D005578 ORTHO05D006969 6.3e-92 341.7 287 59.2
Sc18g0007160 Simmondsia chinensis HOM05D005578 ORTHO05D006969 6.3e-92 341.7 316 56.6
Solyc10g081540.2 Solanum lycopersicum HOM05D005578 ORTHO05D006969 8.2e-92 341.3 280 58.6
Thecc.03G041600 Theobroma cacao HOM05D005578 ORTHO05D006969 8.2e-92 341.3 316 57.9
PGSC0003DMG400028219 Solanum tuberosum HOM05D005578 ORTHO05D006969 1.1e-91 340.9 280 58.6
MBI08_g25556_MAGBIO Magnolia biondii HOM05D005578 ORTHO05D006969 1.4e-91 340.5 335 54.6
Ah.01g024150 Amaranthus hybridus HOM05D005578 ORTHO05D006969 1.8e-91 340.1 281 59.8
Ciclev10020255m.g Citrus clementina HOM05D005578 ORTHO05D006969 3.1e-91 339.3 305 59.0
COL.COLO4_38536 Corchorus olitorius HOM05D005578 ORTHO05D006969 3.1e-91 339.3 315 57.8
MD04G1048400 Malus domestica HOM05D005578 ORTHO05D006969 4.1e-91 339.0 327 54.1
CANSAT35G1372 Cannabis sativa HOM05D005578 ORTHO05D006969 7.0e-91 338.2 305 56.4
CANSAT78G2511 Cannabis sativa HOM05D005578 ORTHO05D006969 9.1e-91 337.8 305 56.4
Psat6g034120 Pisum sativum HOM05D005578 ORTHO05D006969 9.1e-91 337.8 322 55.9
Prupe.1G080200 Prunus persica HOM05D005578 ORTHO05D006969 9.1e-91 337.8 317 54.6
Potri.006G123700 Populus trichocarpa HOM05D005578 ORTHO05D006969 1.2e-90 337.4 305 57.4
Ca_12803_v3 Cicer arietinum L. HOM05D005578 ORTHO05D006969 3.5e-90 335.9 322 55.6
Ca_12815_v3 Cicer arietinum L. HOM05D005578 ORTHO05D006969 3.5e-90 335.9 322 55.6
Gohir.D09G171900 Gossypium hirsutum HOM05D005578 ORTHO05D006969 1.0e-89 334.3 316 57.9
Gorai.006G193800 Gossypium raimondii HOM05D005578 ORTHO05D006969 1.0e-89 334.3 316 57.6
THA.LOC104802321 Tarenaya hassleriana HOM05D005578 ORTHO05D006969 1.0e-89 334.3 280 60.0
arahy.Tifrunner.gnm1.ann1.22GNET Arachis hypogaea HOM05D005578 ORTHO05D006969 1.3e-89 334.0 316 52.8
arahy.Tifrunner.gnm1.ann1.SET2JR Arachis hypogaea HOM05D005578 ORTHO05D006969 1.3e-89 334.0 316 52.8
CiPaw.02G101100 Carya illinoinensis HOM05D005578 ORTHO05D006969 1.3e-89 334.0 280 60.0
ECA232G2403 Erigeron canadensis HOM05D005578 ORTHO05D006969 1.3e-89 334.0 320 55.3
Lj1g0014139 Lotus japonicus HOM05D005578 ORTHO05D006969 1.3e-89 334.0 322 55.9
RcHm_v2.0_Chr4g0406211 Rosa chinensis HOM05D005578 ORTHO05D006969 1.7e-89 333.6 280 58.9
BcaC07g40493 Brassica carinata HOM05D005578 ORTHO05D006969 2.9e-89 332.8 280 58.9
C08p34620 Brassica napus HOM05D005578 ORTHO05D006969 2.9e-89 332.8 280 58.9
BolC8t51064H Brassica oleracea HOM05D005578 ORTHO05D006969 2.9e-89 332.8 280 58.9
PSO478G3531 Papaver somniferum HOM05D005578 ORTHO05D006969 2.9e-89 332.8 286 58.4
Gohir.A09G176200 Gossypium hirsutum HOM05D005578 ORTHO05D006969 3.8e-89 332.4 316 57.9
ClCG07G015240 Citrullus lanatus HOM05D005578 ORTHO05D006969 8.5e-89 331.3 283 59.4
MELO3C017758.2 Cucumis melo HOM05D005578 ORTHO05D006969 1.5e-88 330.5 283 59.7
Aa31LG10G13930 Aethionema arabicum HOM05D005578 ORTHO05D006969 1.9e-88 330.1 282 59.2
Migut.N01914 Erythranthe guttata HOM05D005578 ORTHO05D006969 2.5e-88 329.7 280 61.1
Lj2g0024445 Lotus japonicus HOM05D005578 ORTHO05D006969 3.2e-88 329.3 322 55.3
Lsat_1_v5_gn_2_34381 Lactuca sativa HOM05D005578 ORTHO05D006969 4.2e-88 328.9 316 54.7
FAN22G0827 Fragaria x ananassa HOM05D005578 ORTHO05D006969 5.5e-88 328.6 280 58.6
Sp5g03550 Schrenkiella parvula HOM05D005578 ORTHO05D006969 5.5e-88 328.6 305 56.1
Medtr1g008370 Medicago truncatula HOM05D005578 ORTHO05D006969 7.2e-88 328.2 316 54.1
AUR62027084 Chenopodium quinoa HOM05D005578 ORTHO05D006969 9.4e-88 327.8 281 58.4
FAN12G1674 Fragaria x ananassa HOM05D005578 ORTHO05D006969 9.4e-88 327.8 280 57.9
BcaC07g40470 Brassica carinata HOM05D005578 ORTHO05D006969 1.6e-87 327.0 280 57.5
Thhalv10005976m.g Eutrema salsugineum HOM05D005578 ORTHO05D006969 1.6e-87 327.0 281 59.1
FAN12G2406 Fragaria x ananassa HOM05D005578 ORTHO05D006969 2.7e-87 326.2 280 57.5
CsaV3_4G002830 Cucumis sativus L. HOM05D005578 ORTHO05D006969 4.7e-87 325.5 283 58.7
AT3G59630 Arabidopsis thaliana HOM05D005578 ORTHO05D006969 6.1e-87 325.1 280 57.9
AUR62030923 Chenopodium quinoa HOM05D005578 ORTHO05D006969 1.0e-86 324.3 284 58.1
FvH4_4g10580 Fragaria vesca HOM05D005578 ORTHO05D006969 1.0e-86 324.3 279 57.3
A09p51890 Brassica napus HOM05D005578 ORTHO05D006969 1.8e-86 323.6 280 57.1
BraA09t40625Z Brassica rapa HOM05D005578 ORTHO05D006969 4.0e-86 322.4 280 56.8
CDE08G0459 Ceratophyllum demersum HOM05D005578 ORTHO05D006969 8.8e-86 321.2 325 51.1
VMungo1080G0492 Vigna mungo HOM05D005578 ORTHO05D006969 2.6e-85 319.7 359 49.6
Thhalv10028620m.g Eutrema salsugineum HOM05D005578 ORTHO05D006969 4.4e-85 318.9 280 57.9
CARHR220950 Cardamine hirsuta HOM05D005578 ORTHO05D006969 7.5e-85 318.2 280 57.1
Cpa.g.sc9.352 Carica papaya HOM05D005578 ORTHO05D006969 2.8e-84 316.2 280 58.9
Aqoxy5G03977 Aquilegia oxysepala HOM05D005578 ORTHO05D006969 4.8e-84 315.5 305 56.1
FAN07G2607 Fragaria x ananassa HOM05D005578 ORTHO05D006969 1.1e-83 314.3 299 53.2
Carub.0005s2633 Capsella rubella HOM05D005578 ORTHO05D006969 1.4e-83 313.9 280 56.4
Lj3A157G51 Lonicera japonica HOM05D005578 ORTHO05D006969 1.4e-83 313.9 242 65.3
Zm00001eb064030 Zea mays HOM05D005578 ORTHO05D006969 8.5e-81 304.7 328 51.2
Nn3g18569 Nelumbo nucifera HOM05D005578 ORTHO05D006969 1.6e-79 300.4 288 54.9
HPP92_007603 Vanilla planifolia HOM05D005578 ORTHO05D006969 3.6e-79 299.3 293 53.2
Os11g0265600 Oryza sativa ssp. japonica HOM05D005578 ORTHO05D006969 2.3e-78 296.6 323 49.8
unitig_21.g20051 Utricularia gibba HOM05D005578 ORTHO05D006969 6.8e-78 295.0 310 50.6
SGA_v2.0_scaffold81G26092 Striga asiatica HOM05D005578 ORTHO05D006969 2.2e-76 290.0 282 53.2
TPR.G12104 Trifolium pratense HOM05D005578 ORTHO05D006969 8.6e-73 278.1 322 48.1
SEGI_35608 Sequoiadendron giganteum HOM05D005578 ORTHO05D006969 1.2e-71 274.2 301 48.5
AL5G41540 Arabidopsis lyrata HOM05D005578 ORTHO05D006969 1.2e-66 257.7 164 73.2
AL5G41610 Arabidopsis lyrata HOM05D005578 ORTHO05D006969 2.3e-65 253.4 164 72.0
Mapoly0065s0036 Marchantia polymorpha HOM05D005578 ORTHO05D006969 8.0e-63 245.0 325 40.9
AagrBONN_evm.TU.Sc2ySwM_117.2191 Anthoceros agrestis HOM05D005578 ORTHO05D006969 1.0e-62 244.6 298 44.3
Pp3c8_4090 Physcomitrium patens HOM05D005578 ORTHO05D006969 1.2e-61 241.1 313 41.9
CBR_g26331 Chara braunii HOM05D005578 ORTHO05D006969 1.4e-59 234.2 322 41.3
AL5G41640 Arabidopsis lyrata HOM05D005578 ORTHO05D006969 7.8e-58 228.4 280 45.0
Sed0004414 Sechium edule HOM05D005578 ORTHO05D006969 4.1e-51 206.1 210 51.9
SMO203G0280 Selaginella moellendorffii HOM05D005578 ORTHO05D006969 4.6e-50 202.6 310 40.0
SHI16665 Sapria himalayana HOM05D005578 ORTHO05D006969 1.6e-47 194.1 146 65.1
ATR0743G025 Amborella trichopoda HOM05D005578 ORTHO05D006969 1.9e-43 180.6 208 46.2
Glyma.13G365067 Glycine max HOM05D005578 ORTHO05D006969 3.4e-37 159.8 110 72.7
PRCOL_00000644 Prasinoderma coloniale HOM05D005578 ORTHO05D006969 9.3e-35 151.8 215 42.3
Cre08.g376150 Chlamydomonas reinhardtii HOM05D005578 ORTHO05D006969 2.8e-31 140.2 178 42.7
MCO11G524 Micromonas commoda HOM05D005578 ORTHO05D006969 3.2e-27 126.7 108 50.9
Phvul.L003146 Phaseolus vulgaris HOM05D005578 ORTHO05D006969 7.1e-27 125.6 70 80.0
SHI16666 Sapria himalayana HOM05D005578 ORTHO05D006969 3.9e-25 119.8 159 40.3
Gorai.009G416000 Gossypium raimondii HOM05D005578 ORTHO05D046863 2.7e-18 97.1 121 47.9
Cfa025460 Carpinus fangiana HOM05D005578 ORTHO05D006969 1.3e-17 94.7 106 41.5
Gohir.A04G073032 Gossypium hirsutum HOM05D005578 ORTHO05D046863 5.1e-17 92.8 120 47.5
Glyma.13G365133 Glycine max HOM05D005578 ORTHO05D006969 7.4e-16 89.0 115 43.5
unitig_748.g8133 Utricularia gibba HOM05D006423 ORTHO05D008233 4.3e-08 63.2 153 26.8
Sp2g25200 Schrenkiella parvula HOM05D006423 ORTHO05D008233 7.4e-08 62.4 160 25.6
A06p28730 Brassica napus HOM05D006423 ORTHO05D008233 9.6e-08 62.0 160 25.6
C03p65030 Brassica napus HOM05D006423 ORTHO05D008233 9.6e-08 62.0 160 25.6
BolC3t18761H Brassica oleracea HOM05D006423 ORTHO05D008233 9.6e-08 62.0 160 25.6
BraA06t25814Z Brassica rapa HOM05D006423 ORTHO05D008233 9.6e-08 62.0 160 25.6
CAN.G474.25 Capsicum annuum HOM05D006423 ORTHO05D008233 1.3e-07 61.6 146 26.7
Dinv06913 Davidia involucrata HOM05D006423 ORTHO05D008233 1.3e-07 61.6 161 27.3
EL10Ac4g08897 Beta vulgaris HOM05D006423 ORTHO05D008233 2.8e-07 60.5 150 26.0
BcaB02g09615 Brassica carinata HOM05D006423 ORTHO05D008233 4.8e-07 59.7 160 25.0
Thhalv10004160m.g Eutrema salsugineum HOM05D006423 ORTHO05D008233 4.8e-07 59.7 160 25.0
Lalb_Chr05g0211301 Lupinus albus HOM05D006423 ORTHO05D008233 4.8e-07 59.7 128 28.1
Aqoxy4G02654 Aquilegia oxysepala HOM05D006423 ORTHO05D008233 6.3e-07 59.3 129 29.5
CARHR275820 Cardamine hirsuta HOM05D006423 ORTHO05D008233 6.3e-07 59.3 160 25.0
Ciclev10001185m.g Citrus clementina HOM05D006423 ORTHO05D008233 6.3e-07 59.3 149 27.5
Solyc06g066300.1 Solanum lycopersicum HOM05D006423 ORTHO05D008233 6.3e-07 59.3 146 26.0
Psat6g092640 Pisum sativum HOM05D005578 ORTHO05D006969 8.2e-07 58.9 36 69.4
Sopen06g021720 Solanum pennellii HOM05D006423 ORTHO05D008233 8.2e-07 58.9 146 26.0
Carub.0008s2271 Capsella rubella HOM05D006423 ORTHO05D008233 1.1e-06 58.5 160 25.0
Atru.chr6.948 Acer truncatum HOM05D006423 ORTHO05D008233 1.4e-06 58.2 129 28.7
AL8G38790 Arabidopsis lyrata HOM05D006423 ORTHO05D008233 1.4e-06 58.2 160 25.0
MELO3C018682.2 Cucumis melo HOM05D006423 ORTHO05D008233 1.4e-06 58.2 129 28.7
AT5G62030 Arabidopsis thaliana HOM05D006423 ORTHO05D008233 1.8e-06 57.8 160 24.4
Glyma.12G035900 Glycine max HOM05D006423 ORTHO05D008233 1.8e-06 57.8 129 25.6
Peaxi162Scf00185g01125 Petunia axillaris HOM05D006423 ORTHO05D008233 1.8e-06 57.8 146 26.0
Potri.019G041300 Populus trichocarpa HOM05D006423 ORTHO05D008233 1.8e-06 57.8 160 25.6
FvH4_5g30480 Fragaria vesca HOM05D006423 ORTHO05D008233 2.4e-06 57.4 159 26.4
FAN08G0633 Fragaria x ananassa HOM05D006423 ORTHO05D008233 2.4e-06 57.4 159 26.4
FAN13G0653 Fragaria x ananassa HOM05D006423 ORTHO05D008233 2.4e-06 57.4 159 26.4
FAN18G4202 Fragaria x ananassa HOM05D006423 ORTHO05D008233 2.4e-06 57.4 159 26.4
Aa31LG11G1500 Aethionema arabicum HOM05D006423 ORTHO05D008233 3.1e-06 57.0 160 25.0
Gohir.A03G210100 Gossypium hirsutum HOM05D006423 ORTHO05D008233 3.1e-06 57.0 129 27.9
Gohir.D02G231700 Gossypium hirsutum HOM05D006423 ORTHO05D008233 3.1e-06 57.0 129 27.9
Gorai.005G259400 Gossypium raimondii HOM05D006423 ORTHO05D008233 3.1e-06 57.0 129 27.9
Psat0s769g0120 Pisum sativum HOM05D006423 ORTHO05D008233 3.1e-06 57.0 150 26.0
THA.LOC104798941 Tarenaya hassleriana HOM05D006423 ORTHO05D008233 3.1e-06 57.0 149 24.2
ClCG09G013540 Citrullus lanatus HOM05D006423 ORTHO05D008233 4.1e-06 56.6 129 28.7
Actinidia01333 Actinidia chinensis HOM05D006423 ORTHO05D008233 5.3e-06 56.2 118 28.8
Nn2g14478 Nelumbo nucifera HOM05D006423 ORTHO05D008233 5.3e-06 56.2 157 24.8
Prupe.1G561000 Prunus persica HOM05D006423 ORTHO05D008233 5.3e-06 56.2 312 22.8
CsaV3_7G006110 Cucumis sativus L. HOM05D006423 ORTHO05D008233 6.9e-06 55.8 129 27.9
ATR0564G315 Amborella trichopoda HOM05D006423 ORTHO05D008233 9.0e-06 55.5 129 26.4
COL.COLO4_17915 Corchorus olitorius HOM05D006423 ORTHO05D008233 9.0e-06 55.5 129 27.9
MD04G1037900 Malus domestica HOM05D006423 ORTHO05D008233 9.0e-06 55.5 118 28.8


User provided reference genes

Program Settings