Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 0.0e+00 1456.0 767 100.0
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 8.3e-284 980.3 767 66.8
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 1.6e-274 949.5 767 64.7
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.9e-272 942.6 768 65.4
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 9.6e-272 940.3 763 64.5
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 2.0e-269 932.6 771 64.5
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 2.9e-268 928.7 763 64.6
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 5.3e-262 907.9 767 61.8
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 7.6e-261 904.0 768 61.2
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 7.1e-259 897.5 770 60.6
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 1.2e-258 896.7 768 59.6
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 2.1e-258 896.0 763 61.7
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 2.1e-258 896.0 809 59.5
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 7.9e-258 894.0 784 60.2
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 3.0e-257 892.1 763 62.0
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 3.6e-255 885.2 740 62.8
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 6.2e-255 884.4 766 61.4
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 8.1e-255 884.0 767 60.8
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.1e-254 883.6 764 60.6
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 1.8e-254 882.9 766 60.1
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 9.0e-254 880.6 769 62.0
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 3.4e-253 878.6 769 59.6
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 2.2e-252 875.9 767 59.8
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 1.2e-250 870.2 769 59.0
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 3.3e-248 862.1 768 58.3
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 3.7e-247 858.6 761 59.4
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 6.2e-247 857.8 748 60.3
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.8e-246 856.3 764 59.2
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 1.5e-245 853.2 764 59.0
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 1.5e-245 853.2 767 59.2
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 1.0e-244 850.5 767 60.1
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 1.3e-244 850.1 768 58.7
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 1.7e-244 849.7 761 58.9
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 2.9e-244 849.0 788 57.7
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 4.9e-244 848.2 767 58.5
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 4.9e-244 848.2 762 58.9
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 4.9e-244 848.2 763 60.0
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 1.4e-243 846.7 767 57.9
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 1.4e-243 846.7 766 58.4
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 5.5e-243 844.7 770 60.3
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 5.5e-243 844.7 767 58.7
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 4.6e-242 841.6 778 57.8
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.3e-241 840.1 764 58.2
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 3.0e-241 839.0 762 57.7
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 1.4e-238 830.1 770 59.7
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 5.3e-238 828.2 767 57.4
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 6.9e-238 827.8 765 58.2
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 1.5e-237 826.6 765 57.9
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.6e-237 825.9 776 57.0
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 4.5e-237 825.1 763 57.7
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 5.9e-237 824.7 767 55.7
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 7.6e-237 824.3 776 55.8
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 7.6e-237 824.3 765 57.8
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 1.7e-236 823.2 763 57.3
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 3.8e-236 822.0 765 57.6
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 1.9e-235 819.7 779 56.5
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 2.5e-235 819.3 765 57.4
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 7.2e-235 817.8 763 57.0
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 1.0e-233 813.9 764 55.2
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 1.3e-233 813.5 760 57.2
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 1.3e-233 813.5 765 57.5
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 1.8e-233 813.1 762 56.4
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 1.8e-233 813.1 788 56.0
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 6.7e-233 811.2 787 56.0
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 1.9e-232 809.7 762 56.6
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 9.7e-232 807.4 716 59.6
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 1.0e-228 797.3 780 54.6
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 1.7e-228 796.6 715 59.0
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 2.9e-228 795.8 747 58.8
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 1.4e-227 793.5 771 55.9
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 1.4e-225 786.9 780 54.7
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 2.3e-225 786.2 739 57.4
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 7.4e-224 781.2 771 54.6
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 1.8e-222 776.5 785 54.4
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 1.1e-219 767.3 740 58.9
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 9.4e-219 764.2 809 52.5
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 1.0e-217 760.8 763 54.1
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 2.4e-214 749.6 692 58.2
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 5.0e-212 741.9 768 53.8
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 8.5e-212 741.1 734 55.3
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 3.2e-211 739.2 733 55.3
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 6.7e-209 731.5 573 66.5
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 2.0e-208 729.9 733 56.2
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 4.8e-207 725.3 573 65.3
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.8e-206 723.4 576 64.8
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 3.1e-206 722.6 767 51.8
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 1.0e-204 717.6 768 51.4
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 1.6e-202 710.3 769 51.4
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 6.3e-199 698.4 656 55.2
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 5.4e-198 695.3 746 52.7
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 6.5e-196 688.3 569 62.6
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 7.2e-195 684.9 764 50.0
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 3.6e-194 682.6 569 62.4
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 1.4e-193 680.6 766 51.4
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 5.2e-193 678.7 529 67.7
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 2.6e-192 676.4 569 62.7
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 9.8e-192 674.5 516 67.8
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 9.8e-192 674.5 569 62.4
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 2.0e-189 666.8 570 62.1
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 3.5e-189 666.0 639 56.5
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.2e-181 641.0 461 71.1
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 2.0e-181 640.2 767 48.5
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.0e-177 627.9 529 64.1
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 2.3e-177 626.7 710 50.6
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 4.0e-169 599.4 584 55.1
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 5.8e-168 595.5 769 45.6
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 1.1e-158 564.7 771 42.8
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 6.6e-148 528.9 618 47.6
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 4.0e-145 519.6 527 53.9
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 2.6e-144 516.9 509 53.6
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 7.6e-120 435.6 434 52.3
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 3.2e-118 430.3 291 74.9
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 7.2e-118 429.1 333 65.8
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 9.1e-113 412.1 387 58.4
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 3.9e-108 396.7 480 49.2
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 8.8e-108 395.6 326 63.5
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 9.7e-107 392.1 817 33.2
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 1.7e-103 381.3 489 46.4
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 2.2e-98 364.4 284 66.2
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 7.0e-97 359.4 542 41.9
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 7.2e-94 349.4 284 62.7
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 3.8e-87 327.0 741 31.6
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 1.9e-86 324.7 284 62.0
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 4.5e-80 303.5 775 29.7
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 2.9e-79 300.8 230 67.8
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 1.1e-78 298.9 347 45.5
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 4.9e-66 256.9 177 72.3
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 7.8e-64 249.6 206 61.2
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 1.0e-55 222.6 218 52.3
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 4.1e-49 200.7 639 24.7
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.4e-44 184.9 420 33.6
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.1e-44 184.5 420 33.3
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 1.1e-41 176.0 141 64.5
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 2.3e-39 168.3 189 48.7
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 4.3e-38 164.1 249 43.8
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 1.4e-33 149.1 299 34.4
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 4.0e-28 131.0 111 61.3
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 4.5e-27 127.5 190 39.5
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 4.3e-22 110.9 291 29.9
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 6.2e-21 107.1 88 61.4
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 8.1e-21 106.7 79 69.6
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 1.1e-20 106.3 85 63.5
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.6e-19 101.7 245 34.7
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.0e-15 89.7 72 59.7
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 3.3e-14 84.7 113 45.1
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.1e-12 78.2 64 57.8
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 4.9e-10 70.9 87 36.8
Nitab4.5_0001356g0190 Nicotiana tabacum HOM05D000224 ORTHO05D001489 1.2e-08 66.2 128 33.6
SHI10093 Sapria himalayana HOM05D004734 ORTHO05D006019 1.1e-06 59.7 73 43.8
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 3.3e-06 58.2 84 46.4


User provided reference genes

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