Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g21340 Coffea canephora HOM05D002603 ORTHO05D002907 6.6e-33 143.3 65 100.0
Cc00_g13160 Coffea canephora HOM05D002603 ORTHO05D002907 5.0e-12 73.9 36 94.4
CSS0017575 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 4.6e-10 67.4 59 57.6
CSS0000794 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 6.1e-10 67.0 59 57.6
Prupe.7G034500 Prunus persica HOM05D002603 ORTHO05D002907 1.0e-09 66.2 58 58.6
Solyc12g021180.2 Solanum lycopersicum HOM05D002603 ORTHO05D002907 1.3e-09 65.9 58 56.9
Sopen12g011090 Solanum pennellii HOM05D002603 ORTHO05D002907 1.8e-09 65.5 58 56.9
CAN.G8.30 Capsicum annuum HOM05D002603 ORTHO05D002907 2.3e-09 65.1 58 56.9
Migut.J01643 Erythranthe guttata HOM05D002603 ORTHO05D002907 3.0e-09 64.7 58 55.2
Potri.016G035700 Populus trichocarpa HOM05D002603 ORTHO05D002907 3.0e-09 64.7 66 54.5
SalBow6G2761 Salvia bowleyana HOM05D002603 ORTHO05D002907 3.9e-09 64.3 58 56.9
Cc06_g19640 Coffea canephora HOM05D002603 ORTHO05D002907 5.1e-09 63.9 33 87.9
Oeu005204.2 Olea europaea HOM05D002603 ORTHO05D002907 6.7e-09 63.5 58 53.4
Potri.006G040300 Populus trichocarpa HOM05D002603 ORTHO05D002907 6.7e-09 63.5 64 54.7
Atru.chr1.1397 Acer truncatum HOM05D002603 ORTHO05D002907 8.7e-09 63.2 42 69.0
CSS0025737 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 8.7e-09 63.2 59 54.2
DCAR_009136 Daucus carota HOM05D002603 ORTHO05D002907 8.7e-09 63.2 58 55.2
Nitab4.5_0013137g0010 Nicotiana tabacum HOM05D002603 ORTHO05D002907 8.7e-09 63.2 58 55.2
Sabra16G0038000 Salix brachista HOM05D002603 ORTHO05D002907 8.7e-09 63.2 66 53.0
SGA_v2.0_scaffold66G22265 Striga asiatica HOM05D004207 ORTHO05D002907 8.7e-09 63.2 58 55.2
GSVIVG01025743001 Vitis vinifera HOM05D002603 ORTHO05D002907 8.7e-09 63.2 58 55.2
Sed0008427 Sechium edule HOM05D002603 ORTHO05D002907 1.5e-08 62.4 33 81.8
Cfa019995 Carpinus fangiana HOM05D002603 ORTHO05D002907 2.5e-08 61.6 42 69.0
Nitab4.5_0004629g0060 Nicotiana tabacum HOM05D002603 ORTHO05D002907 2.5e-08 61.6 33 81.8
CANSAT64G0741 Cannabis sativa HOM05D002603 ORTHO05D002907 3.3e-08 61.2 33 81.8
Peaxi162Scf00076g00319 Petunia axillaris HOM05D002603 ORTHO05D002907 3.3e-08 61.2 58 53.4
Actinidia17958 Actinidia chinensis HOM05D002603 ORTHO05D002907 4.3e-08 60.8 58 53.4
Dinv03205 Davidia involucrata HOM05D002603 ORTHO05D002907 4.3e-08 60.8 58 51.7
THA.LOC104823207 Tarenaya hassleriana HOM05D002603 ORTHO05D002907 5.7e-08 60.5 33 78.8
Haze_20237 Corylus avellana HOM05D002603 ORTHO05D002907 9.7e-08 59.7 33 81.8
RcHm_v2.0_Chr0c29g0501071 Rosa chinensis HOM05D002603 ORTHO05D002907 1.3e-07 59.3 58 51.7
RcHm_v2.0_Chr1g0337841 Rosa chinensis HOM05D002603 ORTHO05D002907 1.3e-07 59.3 58 51.7
Sabra06G0027200 Salix brachista HOM05D002603 ORTHO05D002907 1.3e-07 59.3 33 81.8
Lalb_Chr22g0357531 Lupinus albus HOM05D002603 ORTHO05D002907 1.6e-07 58.9 33 78.8
MD14G1089400 Malus domestica HOM05D002603 ORTHO05D002907 1.6e-07 58.9 44 63.6
QL07p011359 Quercus lobata HOM05D002603 ORTHO05D002907 2.2e-07 58.5 42 64.3
Rhsim03G0036700 Rhododendron simsii HOM05D002603 ORTHO05D002907 2.2e-07 58.5 33 78.8
unitig_699.g19524 Utricularia gibba HOM05D002603 ORTHO05D002907 2.2e-07 58.5 58 53.4
MSTRG.10788 Avicennia marina HOM05D002603 ORTHO05D002907 2.8e-07 58.2 58 51.7
CiPaw.09G048800 Carya illinoinensis HOM05D002603 ORTHO05D002907 2.8e-07 58.2 42 66.7
Ciclev10012015m.g Citrus clementina HOM05D002603 ORTHO05D002907 2.8e-07 58.2 33 75.8
FAN10G2006 Fragaria x ananassa HOM05D002603 ORTHO05D002907 2.8e-07 58.2 58 50.0
RcHm_v2.0_Chr1g0337741 Rosa chinensis HOM05D002603 ORTHO05D002907 3.7e-07 57.8 58 50.0
MELO3C026602.2 Cucumis melo HOM05D002603 ORTHO05D002907 4.8e-07 57.4 33 72.7
Duzib128G0797 Durio zibethinus HOM05D002603 ORTHO05D002907 4.8e-07 57.4 56 53.6
MSTRG.19795 Avicennia marina HOM05D002603 ORTHO05D002907 6.3e-07 57.0 58 50.0
AUR62018358 Chenopodium quinoa HOM05D002603 ORTHO05D002907 6.3e-07 57.0 33 72.7
AUR62030304 Chenopodium quinoa HOM05D002603 ORTHO05D002907 6.3e-07 57.0 33 72.7
SGA_v2.0_scaffold69G23162 Striga asiatica HOM05D004207 ORTHO05D005188 6.3e-07 57.0 44 59.1
MD07G1116400 Malus domestica HOM05D002603 ORTHO05D002907 8.2e-07 56.6 33 75.8
MD12G1096300 Malus domestica HOM05D002603 ORTHO05D002907 8.2e-07 56.6 33 75.8
FvH4_7g07280 Fragaria vesca HOM05D002603 ORTHO05D002907 1.1e-06 56.2 58 46.6
FAN01G0401 Fragaria x ananassa HOM05D002603 ORTHO05D002907 1.1e-06 56.2 58 46.6
FAN03G1791 Fragaria x ananassa HOM05D002603 ORTHO05D002907 1.1e-06 56.2 58 46.6
FAN06G3043 Fragaria x ananassa HOM05D002603 ORTHO05D002907 1.1e-06 56.2 58 46.6
Hma1.2p1_0252F.1_g102820 Hydrangea macrophylla HOM05D002603 ORTHO05D002907 1.1e-06 56.2 33 72.7
Sc25g0005460 Simmondsia chinensis HOM05D002603 ORTHO05D002907 1.1e-06 56.2 66 43.9
Prupe.4G082800 Prunus persica HOM05D002603 ORTHO05D002907 1.4e-06 55.8 32 75.0
CSS0034722 Camellia sinensis var. sinensis HOM05D002603 ORTHO05D002907 1.8e-06 55.5 33 75.8
RcHm_v2.0_Chr1g0337801 Rosa chinensis HOM05D002603 ORTHO05D002907 1.8e-06 55.5 58 50.0
PGR031G2792 Punica granatum HOM05D002603 ORTHO05D002907 2.4e-06 55.1 31 77.4
Gohir.D11G322300 Gossypium hirsutum HOM05D002603 ORTHO05D002907 3.1e-06 54.7 31 77.4
Gorai.007G352400 Gossypium raimondii HOM05D002603 ORTHO05D002907 3.1e-06 54.7 31 77.4
Thecc.05G127600 Theobroma cacao HOM05D002603 ORTHO05D002907 3.1e-06 54.7 56 51.8
Manes.09G003600 Manihot esculenta HOM05D002603 ORTHO05D002907 6.9e-06 53.5 33 69.7
CsaV3_3G043000 Cucumis sativus L. HOM05D002603 ORTHO05D002907 9.0e-06 53.1 33 69.7
Eucgr.A02231 Eucalyptus grandis HOM05D002603 ORTHO05D002907 9.0e-06 53.1 31 74.2


User provided reference genes

Program Settings