Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g21300 Coffea canephora HOM05D001514 ORTHO05D002956 7.5e-45 183.3 84 100.0
Cc07_g19450 Coffea canephora HOM05D001514 ORTHO05D002956 6.6e-33 143.7 152 54.6
Cc06_g12010 Coffea canephora HOM05D001514 ORTHO05D002956 2.0e-13 79.0 36 91.7
Phvul.003G132000 Phaseolus vulgaris HOM05D001514 ORTHO05D002956 4.9e-12 74.3 49 65.3
Solyc05g025650.3 Solanum lycopersicum HOM05D001514 ORTHO05D002956 6.4e-12 73.9 37 81.1
Sopen05g020390 Solanum pennellii HOM05D001514 ORTHO05D002956 6.4e-12 73.9 37 81.1
CAN.G1156.43 Capsicum annuum HOM05D001514 ORTHO05D002956 1.1e-11 73.2 36 83.3
PGSC0003DMG400010931 Solanum tuberosum HOM05D001514 ORTHO05D002956 1.1e-11 73.2 36 83.3
VMungo0251G2131 Vigna mungo HOM05D001514 ORTHO05D002956 1.4e-11 72.8 39 74.4
GSVIVG01015098001 Vitis vinifera HOM05D001514 ORTHO05D002956 1.4e-11 72.8 41 75.6
arahy.Tifrunner.gnm1.ann1.3ELC0K Arachis hypogaea HOM05D001514 ORTHO05D002956 2.4e-11 72.0 38 76.3
arahy.Tifrunner.gnm1.ann1.K25QHH Arachis hypogaea HOM05D001514 ORTHO05D002956 2.4e-11 72.0 38 76.3
Nitab4.5_0000024g0160 Nicotiana tabacum HOM05D001514 ORTHO05D002956 2.4e-11 72.0 48 62.5
PGR044G0393 Punica granatum HOM05D001514 ORTHO05D002956 2.4e-11 72.0 49 65.3
Hma1.2p1_0928F.1_g237720 Hydrangea macrophylla HOM05D001514 ORTHO05D002956 4.1e-11 71.2 36 80.6
Peaxi162Scf00724g00710 Petunia axillaris HOM05D001514 ORTHO05D002956 4.1e-11 71.2 48 60.4
Actinidia29921 Actinidia chinensis HOM05D001514 ORTHO05D002956 9.2e-11 70.1 36 77.8
Lj4g0001503 Lotus japonicus HOM05D001514 ORTHO05D002956 9.2e-11 70.1 38 71.1
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 1.2e-10 69.7 36 80.6
TAR352G0002 Trochodendron aralioides HOM05D001514 ORTHO05D002956 1.2e-10 69.7 35 82.9
Lalb_Chr13g0299511 Lupinus albus HOM05D001514 ORTHO05D002956 2.7e-10 68.6 38 68.4
Rhsim01G0044200 Rhododendron simsii HOM05D001514 ORTHO05D002956 2.7e-10 68.6 36 75.0
TWI34G1862 Tripterygium wilfordii HOM05D001514 ORTHO05D002956 2.7e-10 68.6 36 72.2
ATR0618G075 Amborella trichopoda HOM05D001514 ORTHO05D002956 3.5e-10 68.2 38 71.1
TWI32G1203 Tripterygium wilfordii HOM05D001514 ORTHO05D002956 3.5e-10 68.2 36 72.2
TAR374G0149 Trochodendron aralioides HOM05D001514 ORTHO05D002956 3.5e-10 68.2 35 82.9
Ciclev10012311m.g Citrus clementina HOM05D001514 ORTHO05D002956 4.6e-10 67.8 36 77.8
Atru.chr7.1691 Acer truncatum HOM05D001514 ORTHO05D002956 6.0e-10 67.4 36 77.8
CSS0033186 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D002956 6.0e-10 67.4 36 75.0
MELO3C029297.2 Cucumis melo HOM05D001514 ORTHO05D002956 6.0e-10 67.4 36 75.0
CsaV3_1G040840 Cucumis sativus L. HOM05D001514 ORTHO05D002956 6.0e-10 67.4 36 75.0
Rhsim03G0229300 Rhododendron simsii HOM05D001514 ORTHO05D002956 6.0e-10 67.4 36 75.0
vmacro07772 Vaccinium macrocarpon HOM05D001514 ORTHO05D002956 6.0e-10 67.4 36 75.0
Cpa.g.sc280.4 Carica papaya HOM05D001514 ORTHO05D002956 7.8e-10 67.0 36 75.0
Eucgr.C03553 Eucalyptus grandis HOM05D001514 ORTHO05D002956 7.8e-10 67.0 53 64.2
Nn4g25055 Nelumbo nucifera HOM05D001514 ORTHO05D002956 7.8e-10 67.0 36 77.8
SalBow6G3192 Salvia bowleyana HOM05D001514 ORTHO05D002956 7.8e-10 67.0 40 67.5
CDE07G1576 Ceratophyllum demersum HOM05D001514 ORTHO05D002956 1.3e-09 66.2 42 64.3
DCAR_028287 Daucus carota HOM05D001514 ORTHO05D002956 1.7e-09 65.9 36 75.0
Glyma.17G050400 Glycine max HOM05D001514 ORTHO05D002956 2.3e-09 65.5 38 68.4
Actinidia13588 Actinidia chinensis HOM05D001514 ORTHO05D002956 3.0e-09 65.1 35 74.3
PSO675G8609 Papaver somniferum HOM05D001514 ORTHO05D002956 3.0e-09 65.1 46 63.0
Psat6g143520 Pisum sativum HOM05D001514 ORTHO05D002956 3.0e-09 65.1 38 63.2
CANSAT80G0667 Cannabis sativa HOM05D001514 ORTHO05D002956 3.9e-09 64.7 36 72.2
Nn6g31659 Nelumbo nucifera HOM05D001514 ORTHO05D002956 3.9e-09 64.7 36 75.0
Aqoxy7G00823 Aquilegia oxysepala HOM05D001514 ORTHO05D002956 5.1e-09 64.3 39 66.7
Lj7A685G50 Lonicera japonica HOM05D001514 ORTHO05D002956 5.1e-09 64.3 36 75.0
Nn6g33887 Nelumbo nucifera HOM05D001514 ORTHO05D002956 5.1e-09 64.3 41 70.7
PSO732G0495 Papaver somniferum HOM05D001514 ORTHO05D002956 5.1e-09 64.3 46 63.0
Lju926A2T24 Lonicera japonica HOM05D001514 ORTHO05D002956 6.6e-09 63.9 36 75.0
Lj3g0023190 Lotus japonicus HOM05D001514 ORTHO05D002956 6.6e-09 63.9 46 58.7
Potri.006G143500 Populus trichocarpa HOM05D001514 ORTHO05D002956 6.6e-09 63.9 43 60.5
Sc08g0008830 Simmondsia chinensis HOM05D001514 ORTHO05D002956 6.6e-09 63.9 35 74.3
Sc08g0009320 Simmondsia chinensis HOM05D001514 ORTHO05D002956 6.6e-09 63.9 35 74.3
Glyma.13G109200 Glycine max HOM05D001514 ORTHO05D002956 8.7e-09 63.5 36 72.2
Nitab4.5_0002623g0040 Nicotiana tabacum HOM05D001514 ORTHO05D002956 8.7e-09 63.5 32 84.4
Os04g0394500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D002956 8.7e-09 63.5 57 54.4
Manes.03G039301 Manihot esculenta HOM05D001514 ORTHO05D002956 1.5e-08 62.8 35 74.3
Rhsim03G0165300 Rhododendron simsii HOM05D001514 ORTHO05D002956 1.5e-08 62.8 37 70.3
Sed0019346 Sechium edule HOM05D001514 ORTHO05D002956 1.5e-08 62.8 38 65.8
TPR.G22330 Trifolium pratense HOM05D001514 ORTHO05D002956 1.5e-08 62.8 38 60.5
TWI14G0682 Tripterygium wilfordii HOM05D001514 ORTHO05D002956 1.5e-08 62.8 38 68.4
Zm00001eb085100 Zea mays HOM05D001514 ORTHO05D002956 1.9e-08 62.4 40 62.5
CDE06G2266 Ceratophyllum demersum HOM05D001514 ORTHO05D002956 2.5e-08 62.0 42 59.5
Gohir.A05G033200 Gossypium hirsutum HOM05D001514 ORTHO05D002956 2.5e-08 62.0 35 71.4
Gohir.D05G034700 Gossypium hirsutum HOM05D001514 ORTHO05D002956 2.5e-08 62.0 35 71.4
Gorai.009G035100 Gossypium raimondii HOM05D001514 ORTHO05D002956 2.5e-08 62.0 35 71.4
Hma1.2p1_0432F.1_g151930 Hydrangea macrophylla HOM05D001514 ORTHO05D002956 2.5e-08 62.0 37 73.0
unitig_749.g14239 Utricularia gibba HOM05D001514 ORTHO05D002956 2.5e-08 62.0 40 62.5
HPP92_019067 Vanilla planifolia HOM05D001514 ORTHO05D002956 2.5e-08 62.0 42 64.3
EL10Ac8g19108 Beta vulgaris HOM05D001514 ORTHO05D002956 3.3e-08 61.6 35 71.4
Ca_10018_v3 Cicer arietinum L. HOM05D001514 ORTHO05D002956 3.3e-08 61.6 35 65.7
Ca_29583_v3 Cicer arietinum L. HOM05D001514 ORTHO05D002956 3.3e-08 61.6 35 65.7
DCAR_018090 Daucus carota HOM05D001514 ORTHO05D002956 3.3e-08 61.6 52 59.6
Duzib150G1196 Durio zibethinus HOM05D001514 ORTHO05D002956 3.3e-08 61.6 31 77.4
Nitab4.5_0002211g0090 Nicotiana tabacum HOM05D001514 ORTHO05D002956 3.3e-08 61.6 36 72.2
Nitab4.5_0003647g0070 Nicotiana tabacum HOM05D001514 ORTHO05D002956 3.3e-08 61.6 36 72.2
Thecc.09G079200 Theobroma cacao HOM05D001514 ORTHO05D002956 3.3e-08 61.6 31 77.4
TPR.G3053 Trifolium pratense HOM05D001514 ORTHO05D002956 3.3e-08 61.6 38 57.9
Sabra06G0112400 Salix brachista HOM05D001514 ORTHO05D002956 4.3e-08 61.2 36 69.4
CiPaw.03G207900 Carya illinoinensis HOM05D001514 ORTHO05D002956 5.6e-08 60.8 36 69.4
TAR636G3650 Trochodendron aralioides HOM05D001514 ORTHO05D002956 5.6e-08 60.8 45 64.4
AL6G19770 Arabidopsis lyrata HOM05D001514 ORTHO05D002956 7.3e-08 60.5 35 68.6
Carub.0006s0793 Capsella rubella HOM05D001514 ORTHO05D002956 7.3e-08 60.5 31 77.4
Thhalv10002636m.g Eutrema salsugineum HOM05D001514 ORTHO05D002956 7.3e-08 60.5 31 77.4
Gohir.D13G196800 Gossypium hirsutum HOM05D001514 ORTHO05D002956 7.3e-08 60.5 31 74.2
Gorai.013G225500 Gossypium raimondii HOM05D001514 ORTHO05D002956 7.3e-08 60.5 31 74.2
Lsat_1_v5_gn_5_141280 Lactuca sativa HOM05D001514 ORTHO05D002956 7.3e-08 60.5 36 69.4
MD02G1088300 Malus domestica HOM05D001514 ORTHO05D002956 7.3e-08 60.5 35 74.3
Manes.14G037500 Manihot esculenta HOM05D001514 ORTHO05D002956 7.3e-08 60.5 47 61.7
Peaxi162Scf00167g00728 Petunia axillaris HOM05D001514 ORTHO05D002956 7.3e-08 60.5 36 69.4
QL11p000453 Quercus lobata HOM05D001514 ORTHO05D002956 7.3e-08 60.5 36 69.4
Ah.09g229580 Amaranthus hybridus HOM05D006856 ORTHO05D008513 9.6e-08 60.1 32 75.0
AT5G09380 Arabidopsis thaliana HOM05D001514 ORTHO05D002956 9.6e-08 60.1 34 70.6
MSTRG.19469 Avicennia marina HOM05D001514 ORTHO05D002956 9.6e-08 60.1 31 77.4
CARHR204030 Cardamine hirsuta HOM05D001514 ORTHO05D002956 9.6e-08 60.1 35 68.6
AUR62025187 Chenopodium quinoa HOM05D001514 ORTHO05D002956 9.6e-08 60.1 35 68.6
AUR62028987 Chenopodium quinoa HOM05D001514 ORTHO05D002956 9.6e-08 60.1 35 68.6
Thhalv10014696m.g Eutrema salsugineum HOM05D001514 ORTHO05D002956 9.6e-08 60.1 31 77.4
SHI23798 Sapria himalayana HOM05D001514 ORTHO05D002956 9.6e-08 60.1 32 75.0
Solyc05g051620.3 Solanum lycopersicum HOM05D001514 ORTHO05D002956 9.6e-08 60.1 37 67.6
Sopen05g030070 Solanum pennellii HOM05D001514 ORTHO05D002956 9.6e-08 60.1 37 67.6
PGSC0003DMG400007236 Solanum tuberosum HOM05D001514 ORTHO05D002956 9.6e-08 60.1 37 67.6
SGA_v2.0_scaffold97G29141 Striga asiatica HOM05D001514 ORTHO05D002956 9.6e-08 60.1 39 66.7
Thecc.03G152800 Theobroma cacao HOM05D001514 ORTHO05D002956 9.6e-08 60.1 41 63.4
AUR62012000 Chenopodium quinoa HOM05D001514 ORTHO05D002956 1.2e-07 59.7 35 65.7
Migut.J00938 Erythranthe guttata HOM05D001514 ORTHO05D002956 1.6e-07 59.3 31 77.4
Nn5g29183 Nelumbo nucifera HOM05D001514 ORTHO05D002956 1.6e-07 59.3 36 72.2
ATR0075G046 Amborella trichopoda HOM05D001514 ORTHO05D002956 2.1e-07 58.9 43 60.5
Aqoxy7G03922 Aquilegia oxysepala HOM05D001514 ORTHO05D002956 2.1e-07 58.9 47 51.1
CAN.G937.6 Capsicum annuum HOM05D001514 ORTHO05D002956 2.1e-07 58.9 36 69.4
Cpa.g.sc13.283 Carica papaya HOM05D001514 ORTHO05D002956 2.1e-07 58.9 39 61.5
Gohir.A13G191400 Gossypium hirsutum HOM05D001514 ORTHO05D002956 2.1e-07 58.9 31 74.2
HanXRQChr12g0354101 Helianthus annuus HOM05D001514 ORTHO05D002956 2.1e-07 58.9 36 66.7
QL02p025702 Quercus lobata HOM05D001514 ORTHO05D002956 2.1e-07 58.9 34 76.5
Cc02_g04450 Coffea canephora HOM05D001514 ORTHO05D002956 2.8e-07 58.5 35 71.4
Duzib205G1237 Durio zibethinus HOM05D001514 ORTHO05D002956 2.8e-07 58.5 42 59.5
Lalb_Chr01g0000261 Lupinus albus HOM05D001514 ORTHO05D002956 2.8e-07 58.5 36 69.4
HPP92_017926 Vanilla planifolia HOM05D001514 ORTHO05D002956 2.8e-07 58.5 55 49.1
Ah.09g231390 Amaranthus hybridus HOM05D001514 ORTHO05D002956 3.6e-07 58.2 40 60.0
BcaB08g37210 Brassica carinata HOM05D001514 ORTHO05D002956 3.6e-07 58.2 41 58.5
ECA238G0042 Erigeron canadensis HOM05D001514 ORTHO05D002956 3.6e-07 58.2 36 66.7
Prupe.7G201300 Prunus persica HOM05D001514 ORTHO05D002956 3.6e-07 58.2 37 64.9
Sp7g23200 Schrenkiella parvula HOM05D001514 ORTHO05D002956 3.6e-07 58.2 37 67.6
THA.LOC104808893 Tarenaya hassleriana HOM05D001514 ORTHO05D002956 3.6e-07 58.2 36 66.7
A10p27890 Brassica napus HOM05D001514 ORTHO05D002956 4.7e-07 57.8 41 58.5
C09p67990 Brassica napus HOM05D001514 ORTHO05D002956 4.7e-07 57.8 41 58.5
BolC9t59558H Brassica oleracea HOM05D001514 ORTHO05D002956 4.7e-07 57.8 41 58.5
BraA10t44838Z Brassica rapa HOM05D001514 ORTHO05D002956 4.7e-07 57.8 41 58.5
CiPaw.11G050400 Carya illinoinensis HOM05D001514 ORTHO05D002956 4.7e-07 57.8 36 66.7
COL.COLO4_14094 Corchorus olitorius HOM05D001514 ORTHO05D002956 4.7e-07 57.8 41 61.0
Lalb_Chr16g0388951 Lupinus albus HOM05D001514 ORTHO05D002956 4.7e-07 57.8 41 53.7
MBI19_g26576_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D002956 4.7e-07 57.8 33 72.7
COL.COLO4_18113 Corchorus olitorius HOM05D001514 ORTHO05D002956 8.1e-07 57.0 31 71.0
PSO210G5997 Papaver somniferum HOM05D001514 ORTHO05D002956 8.1e-07 57.0 47 51.1
Hund08727 Selenicereus undatus HOM05D001514 ORTHO05D002956 1.1e-06 56.6 32 68.8
CANSAT56G0243 Cannabis sativa HOM05D001514 ORTHO05D002956 1.4e-06 56.2 35 60.0
PSO386G0256 Papaver somniferum HOM05D001514 ORTHO05D002956 1.4e-06 56.2 46 52.2
GSVIVG01014052001 Vitis vinifera HOM05D001514 ORTHO05D002956 1.4e-06 56.2 36 66.7
Dinv16849 Davidia involucrata HOM05D002053 ORTHO05D002135 1.8e-06 55.8 36 69.4
Oeu021699.1 Olea europaea HOM05D001514 ORTHO05D002956 1.8e-06 55.8 38 63.2
MSTRG.8833 Avicennia marina HOM05D001514 ORTHO05D002956 2.4e-06 55.5 37 67.6
Cfa012924 Carpinus fangiana HOM05D001514 ORTHO05D002956 2.4e-06 55.5 36 66.7
Haze_21281 Corylus avellana HOM05D001514 ORTHO05D002956 2.4e-06 55.5 36 66.7
Sp6g33950 Schrenkiella parvula HOM05D001514 ORTHO05D002956 2.4e-06 55.5 34 67.6
Hund11842 Selenicereus undatus HOM05D001514 ORTHO05D002956 2.4e-06 55.5 37 64.9
Ciclev10005426m.g Citrus clementina HOM05D001514 ORTHO05D002956 3.1e-06 55.1 33 69.7
Gohir.D07G046600 Gossypium hirsutum HOM05D001514 ORTHO05D002956 3.1e-06 55.1 41 58.5
Gorai.001G049700 Gossypium raimondii HOM05D001514 ORTHO05D002956 3.1e-06 55.1 41 58.5
arahy.Tifrunner.gnm1.ann1.73EGBL Arachis hypogaea HOM05D001514 ORTHO05D002956 4.0e-06 54.7 36 63.9
Migut.F00495 Erythranthe guttata HOM05D001514 ORTHO05D002956 5.2e-06 54.3 37 67.6
Thhalv10025722m.g Eutrema salsugineum HOM05D001514 ORTHO05D002956 5.2e-06 54.3 37 62.2
Medtr1g080300 Medicago truncatula HOM05D001514 ORTHO05D002956 5.2e-06 54.3 38 52.6
Phvul.011G006800 Phaseolus vulgaris HOM05D001514 ORTHO05D002956 5.2e-06 54.3 36 63.9
VMungo1127G1746 Vigna mungo HOM05D001514 ORTHO05D002956 5.2e-06 54.3 36 63.9
AL7G27970 Arabidopsis lyrata HOM05D001514 ORTHO05D002956 6.9e-06 53.9 39 59.0
CARHR232580 Cardamine hirsuta HOM05D001514 ORTHO05D002956 6.9e-06 53.9 38 60.5
Haze_25984 Corylus avellana HOM05D001514 ORTHO05D002956 6.9e-06 53.9 33 69.7
Haze_25992 Corylus avellana HOM05D001514 ORTHO05D002956 6.9e-06 53.9 33 69.7
CsaV3_4G004060 Cucumis sativus L. HOM05D001514 ORTHO05D002956 6.9e-06 53.9 33 69.7
Atru.chr1.820 Acer truncatum HOM05D001514 ORTHO05D002956 9.0e-06 53.5 41 63.4
Aa31LG7G10400 Aethionema arabicum HOM05D001514 ORTHO05D002956 9.0e-06 53.5 40 57.5
BcaC09g50799 Brassica carinata HOM05D001514 ORTHO05D002956 9.0e-06 53.5 36 61.1
A01p16450 Brassica napus HOM05D001514 ORTHO05D002956 9.0e-06 53.5 36 61.1
C01p20600 Brassica napus HOM05D001514 ORTHO05D002956 9.0e-06 53.5 36 61.1
BolC1t01991H Brassica oleracea HOM05D001514 ORTHO05D002956 9.0e-06 53.5 36 61.1
BraA01t01600Z Brassica rapa HOM05D001514 ORTHO05D002956 9.0e-06 53.5 36 61.1
Glyma.09G230700 Glycine max HOM05D001514 ORTHO05D002956 9.0e-06 53.5 36 63.9
Glyma.12G006000 Glycine max HOM05D001514 ORTHO05D002956 9.0e-06 53.5 36 63.9
Lj1A977G67 Lonicera japonica HOM05D001514 ORTHO05D002956 9.0e-06 53.5 30 80.0
MD01G1181300 Malus domestica HOM05D001514 ORTHO05D002956 9.0e-06 53.5 45 53.3
Sabra03G0074100 Salix brachista HOM05D001514 ORTHO05D002956 9.0e-06 53.5 52 57.7
Sed0019222 Sechium edule HOM05D001514 ORTHO05D002956 9.0e-06 53.5 42 57.1
SGA_v2.0_scaffold44G16557 Striga asiatica HOM05D001514 ORTHO05D002956 9.0e-06 53.5 37 64.9


User provided reference genes

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