Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g20990 Coffea canephora HOM05D003774 ORTHO05D010174 1.2e-158 563.1 296 100.0
RcHm_v2.0_Chr7g0227131 Rosa chinensis HOM05D003774 ORTHO05D010174 5.1e-88 328.6 304 61.2
Nitab4.5_0001463g0060 Nicotiana tabacum HOM05D003774 ORTHO05D010174 8.7e-88 327.8 298 61.1
Nitab4.5_0005616g0030 Nicotiana tabacum HOM05D003774 ORTHO05D010174 3.3e-87 325.9 305 60.3
Peaxi162Scf00688g00424 Petunia axillaris HOM05D003774 ORTHO05D010174 4.3e-87 325.5 312 59.6
PGSC0003DMG400026729 Solanum tuberosum HOM05D003774 ORTHO05D010174 4.3e-87 325.5 278 65.1
MD14G1036300 Malus domestica HOM05D003774 ORTHO05D010174 7.3e-87 324.7 290 63.4
CAN.G1483.1 Capsicum annuum HOM05D003774 ORTHO05D010174 8.1e-86 321.2 282 63.5
Solyc11g027830.2 Solanum lycopersicum HOM05D003774 ORTHO05D010174 8.1e-86 321.2 277 64.3
Sopen11g022590 Solanum pennellii HOM05D003774 ORTHO05D010174 1.1e-85 320.9 266 65.4
FAN08G2588 Fragaria x ananassa HOM05D003774 ORTHO05D010174 4.0e-85 318.9 297 61.3
FvH4_5g31600 Fragaria vesca HOM05D003774 ORTHO05D010174 1.5e-84 317.0 297 61.3
FAN07G1602 Fragaria x ananassa HOM05D003774 ORTHO05D010174 1.1e-82 310.8 297 60.3
Prupe.1G555700 Prunus persica HOM05D003774 ORTHO05D010174 1.4e-82 310.5 298 59.7
HanXRQChr02g0036571 Helianthus annuus HOM05D003774 ORTHO05D010174 4.2e-82 308.9 242 68.2
Lsat_1_v5_gn_1_25800 Lactuca sativa HOM05D003774 ORTHO05D010174 4.2e-82 308.9 268 63.1
Ciclev10003535m.g Citrus clementina HOM05D003774 ORTHO05D010174 4.6e-81 305.4 250 64.4
Manes.18G106000 Manihot esculenta HOM05D003774 ORTHO05D010174 1.0e-80 304.3 306 57.5
CANSAT25G1591 Cannabis sativa HOM05D003774 ORTHO05D010174 3.9e-80 302.4 289 59.5
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 3.9e-80 302.4 282 58.2
Eucgr.F02989 Eucalyptus grandis HOM05D003774 ORTHO05D010174 6.7e-80 301.6 308 58.8
Thecc.08G192700 Theobroma cacao HOM05D003774 ORTHO05D010174 1.9e-79 300.1 245 65.7
Cfa012970 Carpinus fangiana HOM05D003774 ORTHO05D010174 5.6e-79 298.5 286 57.7
TWI14G1031 Tripterygium wilfordii HOM05D003774 ORTHO05D010174 3.1e-77 292.7 230 67.0
AL1G50100 Arabidopsis lyrata HOM05D003774 ORTHO05D010174 6.9e-77 291.6 243 63.4
Sp1g30100 Schrenkiella parvula HOM05D003774 ORTHO05D010174 6.9e-77 291.6 243 63.0
DCAR_017444 Daucus carota HOM05D003774 ORTHO05D010174 1.2e-76 290.8 298 56.0
A09p31890 Brassica napus HOM05D003774 ORTHO05D010174 3.4e-76 289.3 243 62.6
BcaB07g33098 Brassica carinata HOM05D003774 ORTHO05D010174 4.5e-76 288.9 243 63.4
Carub.0347s0001 Capsella rubella HOM05D003774 ORTHO05D010174 4.5e-76 288.9 243 63.4
BcaC08g43723 Brassica carinata HOM05D003774 ORTHO05D010174 7.6e-76 288.1 243 62.6
BolC6t36225H Brassica oleracea HOM05D003774 ORTHO05D010174 7.6e-76 288.1 243 62.6
BraA09t38729Z Brassica rapa HOM05D003774 ORTHO05D010174 7.6e-76 288.1 243 62.6
THA.LOC104816539 Tarenaya hassleriana HOM05D003774 ORTHO05D010174 9.9e-76 287.7 244 62.3
C06p11060 Brassica napus HOM05D003774 ORTHO05D010174 1.3e-75 287.3 243 62.6
PGR042G3332 Punica granatum HOM05D003774 ORTHO05D010174 2.9e-75 286.2 242 63.2
Actinidia29409 Actinidia chinensis HOM05D003774 ORTHO05D010174 3.8e-75 285.8 263 61.2
CiPaw.07G235600 Carya illinoinensis HOM05D003774 ORTHO05D010174 3.8e-75 285.8 310 51.9
Thhalv10001819m.g Eutrema salsugineum HOM05D003774 ORTHO05D010174 3.8e-75 285.8 243 62.6
Atru.chr13.2372 Acer truncatum HOM05D003774 ORTHO05D010174 6.4e-75 285.0 304 54.6
CsaV3_5G040540 Cucumis sativus L. HOM05D003774 ORTHO05D010174 1.4e-74 283.9 249 60.6
Migut.C01324 Erythranthe guttata HOM05D003774 ORTHO05D010174 4.6e-73 278.9 299 53.8
PSO170G3079 Papaver somniferum HOM05D003774 ORTHO05D010174 1.9e-71 273.5 258 57.4
PSO782G0406 Papaver somniferum HOM05D003774 ORTHO05D010174 9.6e-71 271.2 251 57.4
MBI03_g45112_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D010174 4.0e-69 265.8 286 54.9
Haze_21314 Corylus avellana HOM05D003774 ORTHO05D010174 9.0e-69 264.6 292 53.1
FAN18G3876 Fragaria x ananassa HOM05D003402 ORTHO05D003939 1.5e-68 263.8 297 54.2
Potri.013G105500 Populus trichocarpa HOM05D003774 ORTHO05D010174 2.0e-68 263.5 202 66.3
MD04G1056900 Malus domestica HOM05D003774 ORTHO05D010174 2.2e-67 260.0 202 66.8
Oeu013897.1 Olea europaea HOM05D003774 ORTHO05D010174 1.2e-65 254.2 206 63.6
GSVIVG01026088001 Vitis vinifera HOM05D003774 ORTHO05D010174 1.2e-65 254.2 228 61.4
AT1G35340 Arabidopsis thaliana HOM05D003774 ORTHO05D010174 2.1e-65 253.4 207 62.8
ECA247G3883 Erigeron canadensis HOM05D003774 ORTHO05D009174 2.7e-65 253.1 209 64.1
ClCG08G000190 Citrullus lanatus HOM05D003774 ORTHO05D010174 4.6e-65 252.3 282 52.5
Cpa.g.sc66.3 Carica papaya HOM05D003774 ORTHO05D010174 1.3e-64 250.8 209 64.1
COL.COLO4_24648 Corchorus olitorius HOM05D003774 ORTHO05D010174 1.2e-60 237.7 229 58.1
MBI03_g46804_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D010174 2.9e-59 233.0 250 53.6
Aa31LG6G8720 Aethionema arabicum HOM05D003774 ORTHO05D009174 2.3e-56 223.4 196 61.2
SEGI_18058 Sequoiadendron giganteum HOM05D003774 ORTHO05D010174 2.8e-54 216.5 242 50.0
Zm00001eb169160 Zea mays HOM05D003774 ORTHO05D010174 6.3e-54 215.3 245 49.8
Pp3c18_9200 Physcomitrium patens HOM05D003774 ORTHO05D010174 3.6e-49 199.5 242 46.7
MELO3C022227.2 Cucumis melo HOM05D003774 ORTHO05D010174 6.9e-45 185.3 245 44.9
Mapoly0085s0045 Marchantia polymorpha HOM05D003774 ORTHO05D010174 6.9e-45 185.3 260 41.5
Dinv41759 Davidia involucrata HOM05D003774 ORTHO05D010174 7.7e-44 181.8 171 56.7
MSTRG.1569 Avicennia marina HOM05D003774 ORTHO05D010174 2.7e-33 146.7 122 65.6
Rhsim11G0052800 Rhododendron simsii HOM05D003774 ORTHO05D000166 6.1e-33 145.6 153 59.5
CARHR034170 Cardamine hirsuta HOM05D003774 ORTHO05D010174 5.9e-28 129.0 141 55.3
TAR628G1250 Trochodendron aralioides HOM05D003774 ORTHO05D010174 7.7e-28 128.6 98 69.4
Lj7A284G37 Lonicera japonica HOM05D003774 ORTHO05D010174 4.2e-26 122.9 90 72.2
Lj7A284T38 Lonicera japonica HOM05D003774 ORTHO05D010174 9.4e-26 121.7 101 59.4
AagrBONN_evm.TU.Sc2ySwM_340.403 Anthoceros agrestis HOM05D000737 ORTHO05D000581 6.3e-22 109.0 230 33.5
FvH4_5g26640 Fragaria vesca HOM05D003774 ORTHO05D010174 2.5e-18 97.1 105 53.3
MD15G1405700 Malus domestica HOM05D003774 ORTHO05D010174 2.4e-13 80.5 145 36.6
Os11g0219000 Oryza sativa ssp. japonica HOM05D003774 ORTHO05D010174 3.1e-13 80.1 81 56.8
CAN.G271.1 Capsicum annuum HOM05D003774 ORTHO05D010174 2.8e-09 67.0 120 40.8
MCO03G373 Micromonas commoda HOM05D003774 ORTHO05D010174 5.7e-07 59.3 113 34.5
Cre16.g670500 Chlamydomonas reinhardtii HOM05D003774 ORTHO05D010174 7.5e-07 58.9 220 25.9


User provided reference genes

Program Settings