Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 4.0e-42 174.9 85 100.0
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 3.2e-31 138.7 74 93.2
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 7.6e-25 117.5 63 92.1
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 9.9e-25 117.1 63 92.1
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 1.7e-24 116.3 63 90.5
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 6.4e-24 114.4 73 78.1
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 6.4e-24 114.4 73 78.1
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 5.4e-23 111.3 85 69.4
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 7.1e-23 110.9 82 72.0
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 2.1e-22 109.4 84 69.0
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 2.1e-22 109.4 63 85.7
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 3.5e-22 108.6 84 69.0
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 4.6e-22 108.2 80 71.2
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 4.6e-22 108.2 84 69.0
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 7.8e-22 107.5 63 82.5
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.3e-21 106.7 75 73.3
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 1.7e-21 106.3 63 84.1
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 1.7e-21 106.3 81 69.1
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 1.7e-21 106.3 81 69.1
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 1.7e-21 106.3 84 65.5
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 2.3e-21 105.9 82 65.9
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 3.0e-21 105.5 84 66.7
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 3.0e-21 105.5 84 65.5
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 3.0e-21 105.5 63 82.5
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 3.9e-21 105.1 63 81.0
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 3.9e-21 105.1 84 69.0
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 3.9e-21 105.1 84 69.0
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 3.9e-21 105.1 84 65.5
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 3.9e-21 105.1 84 65.5
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 5.1e-21 104.8 84 66.7
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 5.1e-21 104.8 63 81.0
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 5.1e-21 104.8 63 76.2
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 6.6e-21 104.4 63 79.4
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 8.7e-21 104.0 79 67.1
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 8.7e-21 104.0 56 89.3
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 8.7e-21 104.0 83 63.9
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 1.1e-20 103.6 83 65.1
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 1.1e-20 103.6 63 79.4
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.9e-20 102.8 71 71.8
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.9e-20 102.8 79 68.4
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.9e-20 102.8 79 68.4
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 1.9e-20 102.8 63 77.8
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 2.5e-20 102.4 84 63.1
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 2.5e-20 102.4 83 62.7
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 2.5e-20 102.4 83 62.7
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 2.5e-20 102.4 83 62.7
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 3.3e-20 102.1 63 77.8
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 3.3e-20 102.1 62 80.6
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 3.3e-20 102.1 85 65.9
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 4.3e-20 101.7 63 77.8
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 5.6e-20 101.3 62 82.3
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 5.6e-20 101.3 63 76.2
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 5.6e-20 101.3 75 72.0
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 7.3e-20 100.9 74 70.3
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 7.3e-20 100.9 63 76.2
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 7.3e-20 100.9 74 66.2
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 7.3e-20 100.9 76 67.1
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 7.3e-20 100.9 63 76.2
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 9.6e-20 100.5 83 61.4
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 9.6e-20 100.5 82 64.6
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 1.3e-19 100.1 63 76.2
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 1.3e-19 100.1 84 61.9
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 1.3e-19 100.1 72 69.4
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 1.3e-19 100.1 63 77.8
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 1.3e-19 100.1 74 67.6
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 1.3e-19 100.1 63 76.2
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.6e-19 99.8 63 76.2
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 1.6e-19 99.8 63 76.2
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 1.6e-19 99.8 107 54.2
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 1.6e-19 99.8 84 61.9
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 2.1e-19 99.4 63 81.0
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 2.1e-19 99.4 63 81.0
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 2.1e-19 99.4 63 81.0
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 2.1e-19 99.4 63 81.0
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 2.1e-19 99.4 63 81.0
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 2.1e-19 99.4 63 81.0
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 2.8e-19 99.0 75 69.3
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 2.8e-19 99.0 82 62.2
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 3.6e-19 98.6 84 63.1
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 3.6e-19 98.6 63 74.6
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 3.6e-19 98.6 83 61.4
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 4.8e-19 98.2 62 77.4
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 6.2e-19 97.8 63 76.2
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 6.2e-19 97.8 56 83.9
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 6.2e-19 97.8 62 77.4
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 8.1e-19 97.4 75 65.3
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 8.1e-19 97.4 75 65.3
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 8.1e-19 97.4 75 64.0
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 8.1e-19 97.4 75 65.3
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 8.1e-19 97.4 82 63.4
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 1.1e-18 97.1 73 64.4
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 1.1e-18 97.1 73 64.4
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 1.1e-18 97.1 73 64.4
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 1.4e-18 96.7 75 62.7
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 1.4e-18 96.7 63 71.4
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 1.4e-18 96.7 63 71.4
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 1.4e-18 96.7 75 65.3
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 1.8e-18 96.3 75 62.7
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 1.8e-18 96.3 68 72.1
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.8e-18 96.3 84 63.1
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 1.8e-18 96.3 62 79.0
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 1.8e-18 96.3 63 77.8
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 2.4e-18 95.9 74 66.2
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 2.4e-18 95.9 63 76.2
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 2.4e-18 95.9 75 64.0
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 2.4e-18 95.9 68 72.1
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 2.4e-18 95.9 68 72.1
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 2.4e-18 95.9 63 73.0
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.4e-18 95.9 63 73.0
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.4e-18 95.9 63 73.0
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.4e-18 95.9 63 73.0
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 2.4e-18 95.9 63 73.0
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 2.4e-18 95.9 63 73.0
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 3.1e-18 95.5 82 63.4
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 3.1e-18 95.5 79 64.6
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 3.1e-18 95.5 70 70.0
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 3.1e-18 95.5 63 79.4
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 3.1e-18 95.5 89 58.4
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 5.3e-18 94.7 75 66.7
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 5.3e-18 94.7 65 72.3
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 6.9e-18 94.4 63 68.3
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 6.9e-18 94.4 82 61.0
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 9.0e-18 94.0 63 69.8
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 9.0e-18 94.0 63 69.8
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 9.0e-18 94.0 61 73.8
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 9.0e-18 94.0 61 73.8
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 9.0e-18 94.0 65 70.8
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 1.2e-17 93.6 63 69.8
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 1.2e-17 93.6 63 69.8
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 2.0e-17 92.8 80 58.8
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 3.4e-17 92.0 68 67.6
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 5.8e-17 91.3 82 57.3
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 7.6e-17 90.9 65 70.8
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 7.6e-17 90.9 65 70.8
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 7.6e-17 90.9 65 70.8
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 9.9e-17 90.5 60 75.0
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 2.9e-16 89.0 63 65.1
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 2.9e-16 89.0 76 61.8
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 4.9e-16 88.2 51 78.4
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 4.9e-16 88.2 62 75.8
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 2.4e-15 85.9 59 71.2
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 3.2e-15 85.5 68 63.2
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 5.4e-15 84.7 47 85.1
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 3.5e-14 82.0 46 84.8
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 7.9e-14 80.9 47 80.9
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 3.9e-13 78.6 49 75.5
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 8.7e-13 77.4 47 76.6
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 1.9e-12 76.3 84 48.8
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 5.6e-12 74.7 63 58.7
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 7.4e-12 74.3 64 62.5
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 3.6e-11 72.0 65 56.9
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 1.1e-10 70.5 37 83.8
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 4.0e-10 68.6 42 73.8
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 2.0e-09 66.2 64 50.0
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 1.2e-06 57.0 33 75.8


User provided reference genes

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