Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 1.0e-171 606.7 310 100.0
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 2.2e-89 333.2 314 59.6
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 1.1e-88 330.9 314 58.9
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 1.2e-87 327.4 312 59.3
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 5.0e-86 322.0 316 57.6
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 5.0e-86 322.0 313 57.5
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 5.0e-86 322.0 312 57.7
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 1.4e-85 320.5 314 57.3
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 6.1e-84 315.1 312 56.4
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 1.4e-83 313.9 312 56.1
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 2.3e-83 313.2 316 56.3
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 2.3e-83 313.2 313 57.8
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 9.7e-82 307.8 315 55.9
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 1.3e-81 307.4 308 57.1
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 2.2e-81 306.6 316 56.3
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 4.8e-81 305.4 272 61.8
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 6.3e-81 305.1 313 55.0
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 5.3e-80 302.0 315 55.2
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 1.7e-78 297.0 315 55.9
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 2.2e-78 296.6 327 54.7
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.1e-77 294.3 310 57.7
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 6.1e-76 288.5 319 53.9
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.4e-75 287.3 256 61.7
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 6.7e-75 285.0 290 55.2
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 6.7e-75 285.0 230 64.8
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 2.6e-74 283.1 230 64.3
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 7.5e-74 281.6 225 64.9
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 7.5e-74 281.6 227 67.0
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 7.5e-74 281.6 209 70.8
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 1.3e-73 280.8 316 53.2
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 2.2e-73 280.0 231 64.9
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 2.2e-73 280.0 231 64.9
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 3.7e-73 279.3 186 75.8
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 1.1e-72 277.7 311 54.0
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 4.1e-72 275.8 235 60.4
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 4.1e-72 275.8 235 63.4
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 5.3e-72 275.4 214 68.7
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 5.3e-72 275.4 301 53.2
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 7.0e-72 275.0 191 74.9
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 1.2e-71 274.2 194 72.2
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 4.5e-71 272.3 313 53.0
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 7.7e-71 271.6 225 62.7
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 7.7e-71 271.6 223 63.2
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 2.2e-70 270.0 267 56.9
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 5.0e-70 268.9 224 64.7
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 6.5e-70 268.5 202 69.3
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 1.5e-69 267.3 222 63.1
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.9e-69 266.9 200 68.5
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 3.2e-69 266.2 221 62.0
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 4.2e-69 265.8 222 61.3
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 4.2e-69 265.8 268 55.2
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 4.2e-69 265.8 213 67.6
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 4.2e-69 265.8 194 72.7
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 5.5e-69 265.4 187 70.6
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 2.1e-68 263.5 220 62.7
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 2.1e-68 263.5 220 62.7
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 2.7e-68 263.1 242 61.6
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 4.7e-68 262.3 213 62.9
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 4.7e-68 262.3 254 58.7
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 1.4e-67 260.8 226 61.9
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 1.4e-67 260.8 230 61.3
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 1.8e-67 260.4 186 69.9
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 2.3e-67 260.0 226 61.9
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 4.0e-67 259.2 194 67.5
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 6.8e-67 258.5 191 71.2
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 8.8e-67 258.1 213 64.3
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 8.8e-67 258.1 187 69.5
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 1.2e-66 257.7 169 74.6
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.2e-66 257.7 190 67.9
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.5e-66 257.3 186 68.3
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 7.5e-66 255.0 193 66.8
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 1.3e-65 254.2 265 54.7
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 1.3e-65 254.2 190 66.8
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 1.3e-65 254.2 217 64.5
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 2.2e-65 253.4 224 59.4
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.2e-65 253.4 224 59.4
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.2e-65 253.4 224 59.4
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 2.2e-65 253.4 187 66.3
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 3.7e-65 252.7 194 65.5
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.7e-65 252.7 222 59.5
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 4.8e-65 252.3 204 63.7
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 4.8e-65 252.3 204 63.7
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 4.8e-65 252.3 189 65.6
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 6.3e-65 251.9 194 64.9
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 1.1e-64 251.1 204 63.2
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 1.4e-64 250.8 194 64.4
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 1.4e-64 250.8 210 62.4
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 1.4e-64 250.8 193 65.3
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 1.4e-64 250.8 191 67.5
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 3.1e-64 249.6 192 64.6
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 3.1e-64 249.6 196 66.3
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 3.1e-64 249.6 292 51.7
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 3.1e-64 249.6 186 69.4
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 9.1e-64 248.1 215 60.9
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 1.2e-63 247.7 226 60.2
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 2.0e-63 246.9 196 63.8
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 2.0e-63 246.9 201 67.7
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 4.5e-63 245.7 203 63.1
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 4.5e-63 245.7 204 61.8
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 7.7e-63 245.0 227 59.0
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 7.7e-63 245.0 193 65.8
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.5e-61 240.0 248 53.6
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 3.3e-61 239.6 188 64.9
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 6.1e-60 235.3 168 69.6
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 1.8e-59 233.8 174 66.7
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 1.2e-58 231.1 179 67.0
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 5.7e-58 228.8 189 62.4
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 1.3e-57 227.6 189 63.0
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 5.4e-56 222.2 200 60.5
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 2.7e-55 219.9 221 58.8
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 1.9e-53 213.8 160 65.6
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 1.2e-52 211.1 185 61.6
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 2.8e-52 209.9 221 52.9
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.0e-51 208.0 140 74.3
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 2.2e-49 200.3 136 75.0
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 3.2e-48 196.4 159 65.4
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 1.6e-47 194.1 181 58.0
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 2.0e-47 193.7 136 71.3
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 2.7e-47 193.4 131 74.0
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 1.7e-46 190.7 174 58.6
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 2.0e-42 177.2 156 61.5
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 4.9e-41 172.6 109 78.0
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 8.3e-41 171.8 139 65.5
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 6.6e-38 162.2 156 58.3
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.2e-34 151.4 253 40.7
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 6.4e-33 145.6 93 78.5
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.0e-30 136.7 247 42.1
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 3.1e-27 126.7 92 65.2
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 8.9e-27 125.2 148 43.9
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.8e-25 119.8 113 58.4
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.8e-25 119.8 113 58.4
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 3.8e-25 119.8 124 48.4
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 4.9e-25 119.4 132 43.2
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 3.2e-24 116.7 129 51.9
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 3.5e-23 113.2 116 55.2
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 5.1e-22 109.4 83 68.7
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 3.4e-18 96.7 87 57.5
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.5e-13 81.3 167 40.7
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 1.4e-11 74.7 110 46.4
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 9.3e-08 62.0 41 70.7
FvH4_1g24250 Fragaria vesca HOM05D017060 ORTHO05D046490 2.7e-07 60.5 104 44.2
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 6.7e-06 55.8 55 56.4


User provided reference genes

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