Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 1.3e-136 490.0 292 100.0
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 1.3e-83 313.9 234 70.1
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 2.7e-81 306.2 239 68.6
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 1.7e-80 303.5 239 68.2
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 1.1e-79 300.8 239 67.4
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 1.5e-79 300.4 237 67.9
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 1.9e-79 300.1 240 68.3
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 1.9e-79 300.1 239 66.9
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 1.9e-79 300.1 239 66.9
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 7.3e-79 298.1 225 70.7
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 1.2e-78 297.4 215 72.6
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 1.6e-78 297.0 215 73.5
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 1.6e-78 297.0 239 66.9
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 2.1e-78 296.6 226 70.8
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 4.7e-78 295.4 211 73.0
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 4.7e-78 295.4 211 73.0
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 4.0e-77 292.4 220 72.3
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 5.2e-77 292.0 210 71.9
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 6.8e-77 291.6 206 75.2
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 1.5e-76 290.4 231 70.1
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 4.4e-76 288.9 212 71.2
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 4.4e-76 288.9 207 74.9
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 7.5e-76 288.1 235 68.5
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 1.7e-75 287.0 235 68.5
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 1.7e-75 287.0 206 72.8
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 2.2e-75 286.6 210 72.9
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 2.9e-75 286.2 205 73.7
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 2.9e-75 286.2 229 67.7
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 3.7e-75 285.8 210 73.3
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 3.7e-75 285.8 224 69.6
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 4.9e-75 285.4 235 67.7
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 4.9e-75 285.4 228 66.7
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 6.4e-75 285.0 237 67.5
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 1.1e-74 284.3 201 74.6
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 1.8e-74 283.5 210 72.4
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 4.1e-74 282.3 227 67.8
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 4.1e-74 282.3 225 67.6
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 4.1e-74 282.3 203 72.4
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 4.1e-74 282.3 201 74.1
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 7.0e-74 281.6 203 72.9
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 7.0e-74 281.6 201 73.6
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 9.2e-74 281.2 205 72.7
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 1.6e-73 280.4 227 69.2
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 1.6e-73 280.4 206 71.8
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 2.0e-73 280.0 203 72.9
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 3.5e-73 279.3 203 72.4
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 7.8e-73 278.1 221 65.2
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 1.3e-72 277.3 206 68.9
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 1.3e-72 277.3 207 70.0
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 1.3e-72 277.3 206 68.4
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 3.0e-72 276.2 225 64.9
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 2.5e-71 273.1 226 64.6
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 2.5e-71 273.1 202 68.8
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 5.6e-71 271.9 222 68.5
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 1.2e-70 270.8 203 67.5
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 1.6e-70 270.4 205 70.2
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 3.6e-70 269.2 204 71.6
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 3.6e-70 269.2 204 70.6
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 4.7e-70 268.9 222 64.4
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 8.0e-70 268.1 203 67.0
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 1.0e-69 267.7 212 67.5
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 1.4e-69 267.3 203 67.5
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 1.8e-69 266.9 207 67.1
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 2.3e-69 266.5 230 65.2
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 3.1e-69 266.2 203 66.5
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 4.0e-69 265.8 203 67.5
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 4.0e-69 265.8 206 66.0
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 4.0e-69 265.8 206 67.0
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 5.2e-69 265.4 228 63.6
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 8.9e-69 264.6 203 67.5
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 8.9e-69 264.6 203 67.5
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 8.9e-69 264.6 203 67.5
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 8.9e-69 264.6 203 67.5
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 8.9e-69 264.6 203 67.5
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 1.2e-68 264.2 203 66.5
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 2.0e-68 263.5 203 66.0
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 2.6e-68 263.1 205 63.4
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 3.4e-68 262.7 207 66.7
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 1.3e-67 260.8 203 66.5
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 1.3e-67 260.8 229 63.3
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 1.7e-67 260.4 205 62.9
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 2.9e-67 259.6 206 66.0
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 2.9e-67 259.6 207 65.7
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 2.9e-67 259.6 207 66.2
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 1.9e-66 256.9 225 62.2
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 1.9e-66 256.9 214 64.0
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 3.2e-66 256.1 220 62.7
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 3.2e-66 256.1 220 62.7
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 7.0e-66 255.0 221 62.9
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 1.2e-65 254.2 203 66.0
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 7.8e-65 251.5 204 63.7
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 1.0e-64 251.1 216 64.8
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 3.0e-64 249.6 182 72.5
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 1.9e-63 246.9 235 58.7
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 9.5e-63 244.6 181 69.1
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 1.2e-62 244.2 202 63.4
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 1.6e-62 243.8 204 63.2
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 2.0e-60 236.9 211 61.6
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 3.4e-60 236.1 214 58.9
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 4.4e-60 235.7 214 59.8
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 5.8e-60 235.3 227 56.4
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 5.4e-58 228.8 219 57.5
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 7.1e-58 228.4 221 57.0
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 2.1e-57 226.9 168 72.0
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 3.3e-55 219.5 186 60.2
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 1.4e-53 214.2 228 57.0
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 3.1e-53 213.0 153 71.2
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 4.0e-53 212.6 183 59.0
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 3.4e-52 209.5 215 51.6
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 5.6e-47 192.2 183 57.4
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 9.6e-47 191.4 155 64.5
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 5.1e-32 142.5 109 65.1
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 1.3e-22 111.3 101 55.4
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 3.7e-22 109.8 111 53.2
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 1.0e-19 101.7 71 70.4
CBR_g49935 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-15 86.7 113 45.1
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-15 86.7 99 41.4
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 1.3e-14 84.7 71 59.2
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 4.2e-10 69.7 65 60.0
Actinidia06890 Actinidia chinensis HOM05D006682 ORTHO05D054450 3.0e-08 63.5 61 55.7
Aqoxy4G00577 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 3.7e-06 56.6 56 53.6
MBI13_g31543_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 3.7e-06 56.6 37 64.9


User provided reference genes

Program Settings