Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g20340 Coffea canephora HOM05D000055 ORTHO05D153423 1.1e-89 333.2 159 100.0
Cc01_g11240 Coffea canephora HOM05D000055 ORTHO05D003892 8.6e-26 120.9 127 54.3
SGA_v2.0_scaffold97G29216 Striga asiatica HOM05D000055 ORTHO05D003892 2.5e-25 119.4 130 53.1
Lj1C190G12 Lonicera japonica HOM05D000055 ORTHO05D003892 7.3e-25 117.9 130 53.8
Oeu002458.1 Olea europaea HOM05D000055 ORTHO05D003892 2.1e-24 116.3 126 51.6
unitig_747.g22000 Utricularia gibba HOM05D000055 ORTHO05D003892 2.1e-24 116.3 130 53.1
Dinv32758 Davidia involucrata HOM05D000055 ORTHO05D003892 2.8e-24 115.9 132 52.3
Aa31LG4G14560 Aethionema arabicum HOM05D000055 ORTHO05D003892 3.6e-24 115.5 129 50.4
MSTRG.21130 Avicennia marina HOM05D000055 ORTHO05D003892 4.7e-24 115.2 127 53.5
BcaB08g36351 Brassica carinata HOM05D000055 ORTHO05D003892 6.2e-24 114.8 132 50.8
BcaC04g19713 Brassica carinata HOM05D000055 ORTHO05D003892 8.1e-24 114.4 132 50.8
A10p17740 Brassica napus HOM05D000055 ORTHO05D003892 8.1e-24 114.4 132 50.8
C09p53200 Brassica napus HOM05D000055 ORTHO05D003892 8.1e-24 114.4 132 50.8
BolC9t58195H Brassica oleracea HOM05D000055 ORTHO05D003892 8.1e-24 114.4 132 50.8
BraA10t43852Z Brassica rapa HOM05D000055 ORTHO05D003892 8.1e-24 114.4 132 50.8
CARHR274210 Cardamine hirsuta HOM05D000055 ORTHO05D003892 8.1e-24 114.4 132 50.8
Sp6g22120 Schrenkiella parvula HOM05D000055 ORTHO05D003892 8.1e-24 114.4 132 50.8
Thhalv10013666m.g Eutrema salsugineum HOM05D000055 ORTHO05D003892 1.1e-23 114.0 132 50.8
Nitab4.5_0000181g0050 Nicotiana tabacum HOM05D000055 ORTHO05D003892 1.1e-23 114.0 132 51.5
Hma1.2p1_1031F.1_g249950 Hydrangea macrophylla HOM05D000055 ORTHO05D003892 1.4e-23 113.6 130 48.5
Sopen11g028030 Solanum pennellii HOM05D000055 ORTHO05D003892 1.8e-23 113.2 132 50.8
Lj2A1030G59 Lonicera japonica HOM05D000055 ORTHO05D003892 2.4e-23 112.8 132 51.5
AL8G37140 Arabidopsis lyrata HOM05D000055 ORTHO05D003892 4.0e-23 112.1 129 50.4
AT5G60550 Arabidopsis thaliana HOM05D000055 ORTHO05D003892 4.0e-23 112.1 129 50.4
BcaB05g22653 Brassica carinata HOM05D000055 ORTHO05D003892 4.0e-23 112.1 132 47.7
Carub.0008s2124 Capsella rubella HOM05D000055 ORTHO05D003892 4.0e-23 112.1 129 50.4
C02p11590 Brassica napus HOM05D000055 ORTHO05D003892 5.2e-23 111.7 132 47.7
BraA02t05716Z Brassica rapa HOM05D000055 ORTHO05D003892 5.2e-23 111.7 132 47.7
Rhsim13G0093800 Rhododendron simsii HOM05D000055 ORTHO05D003892 6.8e-23 111.3 132 50.8
SalBow3G2078 Salvia bowleyana HOM05D000055 ORTHO05D003892 6.8e-23 111.3 130 50.0
Actinidia03736 Actinidia chinensis HOM05D000055 ORTHO05D003892 8.9e-23 110.9 127 52.0
MSTRG.17813 Avicennia marina HOM05D000055 ORTHO05D003892 8.9e-23 110.9 130 49.2
Nitab4.5_0011503g0020 Nicotiana tabacum HOM05D000055 ORTHO05D003892 8.9e-23 110.9 132 50.8
SalBow3G0288 Salvia bowleyana HOM05D000055 ORTHO05D003892 8.9e-23 110.9 132 50.0
CSS0032288 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D003892 1.2e-22 110.5 132 50.8
BcaC03g13960 Brassica carinata HOM05D000055 ORTHO05D003892 1.5e-22 110.2 132 47.0
BolC2t07246H Brassica oleracea HOM05D000055 ORTHO05D003892 1.5e-22 110.2 132 47.0
Gorai.001G132000 Gossypium raimondii HOM05D000055 ORTHO05D003892 1.5e-22 110.2 130 48.5
DCAR_015541 Daucus carota HOM05D000055 ORTHO05D003892 2.0e-22 109.8 132 50.8
PGSC0003DMG400008108 Solanum tuberosum HOM05D000055 ORTHO05D003892 2.0e-22 109.8 131 49.6
THA.LOC104799499 Tarenaya hassleriana HOM05D000055 ORTHO05D003892 2.0e-22 109.8 127 51.2
THA.LOC104810850 Tarenaya hassleriana HOM05D000055 ORTHO05D003892 2.0e-22 109.8 127 51.2
Aa31LG1G12540 Aethionema arabicum HOM05D000055 ORTHO05D003892 2.6e-22 109.4 129 51.9
Aqoxy1G01251 Aquilegia oxysepala HOM05D000055 ORTHO05D003892 2.6e-22 109.4 132 50.0
Cpa.g.sc216.16 Carica papaya HOM05D000055 ORTHO05D003892 2.6e-22 109.4 130 50.0
DCAR_006057 Daucus carota HOM05D000055 ORTHO05D003892 2.6e-22 109.4 132 50.0
CAN.G631.17 Capsicum annuum HOM05D000055 ORTHO05D003892 3.4e-22 109.0 134 49.3
Cfa011330 Carpinus fangiana HOM05D000055 ORTHO05D003892 3.4e-22 109.0 132 50.8
Manes.11G144200 Manihot esculenta HOM05D000055 ORTHO05D003892 3.4e-22 109.0 132 51.5
ECA248G2155 Erigeron canadensis HOM05D000055 ORTHO05D003892 4.4e-22 108.6 131 49.6
TAR636G2561 Trochodendron aralioides HOM05D000055 ORTHO05D003892 4.4e-22 108.6 130 48.5
Eucgr.B02491 Eucalyptus grandis HOM05D000055 ORTHO05D003892 5.8e-22 108.2 132 49.2
vmacro03192 Vaccinium macrocarpon HOM05D000055 ORTHO05D003892 5.8e-22 108.2 140 50.0
ECA233G4401 Erigeron canadensis HOM05D000055 ORTHO05D003892 7.6e-22 107.8 132 48.5
Gohir.A07G117900 Gossypium hirsutum HOM05D000055 ORTHO05D003892 7.6e-22 107.8 130 47.7
HanXRQChr02g0055721 Helianthus annuus HOM05D000055 ORTHO05D003892 7.6e-22 107.8 132 47.7
vmacro14443 Vaccinium macrocarpon HOM05D000055 ORTHO05D003892 7.6e-22 107.8 129 50.4
Gohir.D05G076800 Gossypium hirsutum HOM05D000055 ORTHO05D003892 9.9e-22 107.5 132 49.2
Gorai.009G078200 Gossypium raimondii HOM05D000055 ORTHO05D003892 9.9e-22 107.5 132 49.2
Nitab4.5_0000650g0130 Nicotiana tabacum HOM05D000055 ORTHO05D003892 9.9e-22 107.5 132 49.2
Gohir.A05G073900 Gossypium hirsutum HOM05D000055 ORTHO05D003892 1.3e-21 107.1 132 49.2
Gohir.D07G122200 Gossypium hirsutum HOM05D000055 ORTHO05D003892 1.3e-21 107.1 130 47.7
MBI07_g19318_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D003892 1.3e-21 107.1 129 50.4
TWI79G0113 Tripterygium wilfordii HOM05D000055 ORTHO05D003892 1.3e-21 107.1 129 50.4
Haze_23862 Corylus avellana HOM05D000055 ORTHO05D003892 1.7e-21 106.7 132 50.0
HPP92_012805 Vanilla planifolia HOM05D000055 ORTHO05D003892 2.2e-21 106.3 130 46.9
Thhalv10002549m.g Eutrema salsugineum HOM05D000055 ORTHO05D003892 2.9e-21 105.9 129 48.8
HanXRQChr01g0018391 Helianthus annuus HOM05D000055 ORTHO05D003892 2.9e-21 105.9 130 46.9
Lsat_1_v5_gn_6_46181 Lactuca sativa HOM05D000055 ORTHO05D003892 2.9e-21 105.9 132 47.7
TAR633G0710 Trochodendron aralioides HOM05D000055 ORTHO05D003892 2.9e-21 105.9 129 48.8
CANSAT54G2619 Cannabis sativa HOM05D000055 ORTHO05D003892 3.8e-21 105.5 130 49.2
GSVIVG01025173001 Vitis vinifera HOM05D000055 ORTHO05D003892 3.8e-21 105.5 132 47.7
CiPaw.13G112000 Carya illinoinensis HOM05D000055 ORTHO05D003892 4.9e-21 105.1 132 49.2
MD11G1134400 Malus domestica HOM05D000055 ORTHO05D003892 4.9e-21 105.1 130 47.7
TAR623G1161 Trochodendron aralioides HOM05D000055 ORTHO05D003892 4.9e-21 105.1 129 48.8
Prupe.6G100200 Prunus persica HOM05D000055 ORTHO05D003892 6.4e-21 104.8 130 47.7
Atru.chr3.3642 Acer truncatum HOM05D000055 ORTHO05D003892 8.4e-21 104.4 131 48.1
AT3G45240 Arabidopsis thaliana HOM05D000055 ORTHO05D003892 8.4e-21 104.4 130 50.0
Carub.0005s1102 Capsella rubella HOM05D000055 ORTHO05D003892 8.4e-21 104.4 133 48.9
ClCG02G021100 Citrullus lanatus HOM05D000055 ORTHO05D003892 8.4e-21 104.4 132 47.7
Ciclev10028546m.g Citrus clementina HOM05D000055 ORTHO05D003892 8.4e-21 104.4 132 47.0
Lsat_1_v5_gn_1_65461 Lactuca sativa HOM05D000055 ORTHO05D003892 8.4e-21 104.4 130 45.4
Manes.04G022100 Manihot esculenta HOM05D000055 ORTHO05D003892 8.4e-21 104.4 133 49.6
Potri.009G012900 Populus trichocarpa HOM05D000055 ORTHO05D003892 8.4e-21 104.4 132 49.2
AL5G23810 Arabidopsis lyrata HOM05D000055 ORTHO05D003892 1.1e-20 104.0 130 50.0
MELO3C025767.2 Cucumis melo HOM05D000055 ORTHO05D003892 1.1e-20 104.0 132 47.0
CARHR150700 Cardamine hirsuta HOM05D000055 ORTHO05D003892 1.4e-20 103.6 129 47.3
Gorai.004G013200 Gossypium raimondii HOM05D000055 ORTHO05D003892 1.4e-20 103.6 130 46.9
QL01p022404 Quercus lobata HOM05D000055 ORTHO05D003892 1.4e-20 103.6 132 47.7
Thecc.09G257000 Theobroma cacao HOM05D000055 ORTHO05D003892 1.4e-20 103.6 132 47.0
CiPaw.14G079900 Carya illinoinensis HOM05D000055 ORTHO05D003892 1.9e-20 103.2 130 49.2
Duzib150G1261 Durio zibethinus HOM05D000055 ORTHO05D003892 2.4e-20 102.8 132 46.2
Sed0006682 Sechium edule HOM05D000614 ORTHO05D003892 2.4e-20 102.8 130 47.7
Psat5g277920 Pisum sativum HOM05D000055 ORTHO05D003892 4.2e-20 102.1 130 46.9
RcHm_v2.0_Chr5g0059631 Rosa chinensis HOM05D000055 ORTHO05D003892 5.4e-20 101.7 129 47.3
Sp5g16060 Schrenkiella parvula HOM05D000055 ORTHO05D003892 5.4e-20 101.7 129 48.8
CsaV3_6G013850 Cucumis sativus L. HOM05D000055 ORTHO05D003892 7.1e-20 101.3 132 46.2
HPP92_005398 Vanilla planifolia HOM05D000055 ORTHO05D003892 7.1e-20 101.3 127 48.0
FAN16G0066 Fragaria x ananassa HOM05D000055 ORTHO05D003892 9.3e-20 100.9 129 47.3
Glyma.13G326900 Glycine max HOM05D000055 ORTHO05D003892 9.3e-20 100.9 130 46.9
Gohir.A08G008700 Gossypium hirsutum HOM05D000055 ORTHO05D003892 9.3e-20 100.9 130 46.2
PGR102G0854 Punica granatum HOM05D000055 ORTHO05D003892 9.3e-20 100.9 140 44.3
Duzib168G0484 Durio zibethinus HOM05D000055 ORTHO05D003892 1.2e-19 100.5 132 45.5
FAN21G3773 Fragaria x ananassa HOM05D000055 ORTHO05D003892 1.2e-19 100.5 129 47.3
Lj3g0014873 Lotus japonicus HOM05D000055 ORTHO05D003892 1.2e-19 100.5 127 47.2
Medtr2g094090 Medicago truncatula HOM05D000055 ORTHO05D003892 1.2e-19 100.5 131 47.3
TWI31G1287 Tripterygium wilfordii HOM05D000055 ORTHO05D003892 1.2e-19 100.5 129 48.1
Actinidia07130 Actinidia chinensis HOM05D000055 ORTHO05D003892 1.6e-19 100.1 132 47.0
Nn2g10768 Nelumbo nucifera HOM05D000055 ORTHO05D003892 1.6e-19 100.1 129 47.3
PSO339G3375 Papaver somniferum HOM05D000055 ORTHO05D003892 1.6e-19 100.1 127 45.7
PSO384G4136 Papaver somniferum HOM05D000055 ORTHO05D003892 1.6e-19 100.1 127 45.7
TPR.G11565 Trifolium pratense HOM05D000055 ORTHO05D003892 1.6e-19 100.1 130 46.9
FvH4_3g32550 Fragaria vesca HOM05D000055 ORTHO05D003892 2.1e-19 99.8 127 47.2
Glyma.12G173600 Glycine max HOM05D000055 ORTHO05D003892 2.1e-19 99.8 130 46.2
Psat7g224720 Pisum sativum HOM05D000055 ORTHO05D003892 2.1e-19 99.8 130 46.2
TPR.G15553 Trifolium pratense HOM05D000055 ORTHO05D003892 2.1e-19 99.8 132 46.2
Migut.O00632 Erythranthe guttata HOM05D000055 ORTHO05D003892 2.7e-19 99.4 127 48.0
FAN11G2098 Fragaria x ananassa HOM05D000055 ORTHO05D003892 2.7e-19 99.4 129 47.3
Phvul.005G135922 Phaseolus vulgaris HOM05D000055 ORTHO05D003892 2.7e-19 99.4 130 46.2
FAN25G0102 Fragaria x ananassa HOM05D000055 ORTHO05D003892 6.0e-19 98.2 130 46.9
Gohir.D08G018700 Gossypium hirsutum HOM05D000055 ORTHO05D003892 6.0e-19 98.2 131 46.6
Ah.15g094100 Amaranthus hybridus HOM05D000055 ORTHO05D003892 7.8e-19 97.8 130 44.6
Lalb_Chr22g0350221 Lupinus albus HOM05D000055 ORTHO05D003892 1.0e-18 97.4 130 46.2
PSO063G7525 Papaver somniferum HOM05D000055 ORTHO05D003892 1.3e-18 97.1 127 44.9
Nitab4.5_0003701g0050 Nicotiana tabacum HOM05D000055 ORTHO05D003892 1.7e-18 96.7 125 47.2
Rhsim01G0217700 Rhododendron simsii HOM05D000055 ORTHO05D003892 1.7e-18 96.7 163 42.3
Lalb_Chr19g0137341 Lupinus albus HOM05D000055 ORTHO05D003892 2.3e-18 96.3 130 44.6
MD03G1116200 Malus domestica HOM05D000055 ORTHO05D003892 2.3e-18 96.3 125 46.4
Peaxi162Scf00270g00098 Petunia axillaris HOM05D000055 ORTHO05D003892 2.3e-18 96.3 125 48.0
Glyma.12G068500 Glycine max HOM05D000055 ORTHO05D003892 3.0e-18 95.9 136 46.3
ATR0115G016 Amborella trichopoda HOM05D000055 ORTHO05D003892 3.9e-18 95.5 127 46.5
arahy.Tifrunner.gnm1.ann1.E5GBGH Arachis hypogaea HOM05D000055 ORTHO05D003892 3.9e-18 95.5 130 44.6
VMungo1080G1375 Vigna mungo HOM05D000055 ORTHO05D003892 3.9e-18 95.5 130 45.4
Os03g0711300 Oryza sativa ssp. japonica HOM05D000055 ORTHO05D003892 5.1e-18 95.1 130 43.8
Sabra09G0008400 Salix brachista HOM05D000055 ORTHO05D003892 6.6e-18 94.7 130 46.9
arahy.Tifrunner.gnm1.ann1.E1CD9Y Arachis hypogaea HOM05D000055 ORTHO05D003892 8.7e-18 94.4 130 43.8
Lalb_Chr01g0004251 Lupinus albus HOM05D000055 ORTHO05D003892 8.7e-18 94.4 126 45.2
Medtr4g059560 Medicago truncatula HOM05D000055 ORTHO05D003892 1.9e-17 93.2 129 45.7
VMungo1127G1522 Vigna mungo HOM05D000055 ORTHO05D003892 1.9e-17 93.2 132 44.7
Lj3g0023786 Lotus japonicus HOM05D000055 ORTHO05D003892 2.5e-17 92.8 136 44.1
PSO339G0350 Papaver somniferum HOM05D000055 ORTHO05D003892 2.5e-17 92.8 127 43.3
Phvul.011G078300 Phaseolus vulgaris HOM05D000055 ORTHO05D003892 3.3e-17 92.4 132 44.7
Pp3c2_14270 Physcomitrium patens HOM05D000055 ORTHO05D003892 9.6e-17 90.9 132 38.6
SEGI_17972 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 9.6e-17 90.9 127 44.1
EL10Ac7g16406 Beta vulgaris HOM05D000055 ORTHO05D003892 1.6e-16 90.1 132 42.4
AUR62001489 Chenopodium quinoa HOM05D000055 ORTHO05D003892 1.6e-16 90.1 130 40.8
Hund05740 Selenicereus undatus HOM05D000055 ORTHO05D003892 1.6e-16 90.1 130 41.5
Thecc.10G171700 Theobroma cacao HOM05D000055 ORTHO05D003892 1.6e-16 90.1 130 40.8
AUR62009881 Chenopodium quinoa HOM05D000055 ORTHO05D003892 2.1e-16 89.7 130 40.8
Sc06g0006930 Simmondsia chinensis HOM05D000055 ORTHO05D003892 2.1e-16 89.7 130 42.3
MBI19_g17414_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D003892 3.6e-16 89.0 130 43.1
Zm00001eb427480 Zea mays HOM05D000055 ORTHO05D003892 3.6e-16 89.0 130 41.5
Glyma.11G147500 Glycine max HOM05D000055 ORTHO05D003892 4.8e-16 88.6 143 42.7
Ah.08g216770 Amaranthus hybridus HOM05D000055 ORTHO05D003892 1.4e-15 87.0 130 41.5
CDE07G1595 Ceratophyllum demersum HOM05D000055 ORTHO05D003892 1.4e-15 87.0 131 42.0
Sabra04G0142300 Salix brachista HOM05D000055 ORTHO05D003892 1.8e-15 86.7 172 38.4
Zm00001eb075500 Zea mays HOM05D000055 ORTHO05D003892 5.3e-15 85.1 130 39.2
Duzib106G1552 Durio zibethinus HOM05D000055 ORTHO05D003892 6.9e-15 84.7 134 38.8
Mapoly0069s0064 Marchantia polymorpha HOM05D000055 ORTHO05D003892 1.2e-14 84.0 127 39.4
SEGI_01883 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 1.2e-14 84.0 132 41.7
GSVIVG01025378001 Vitis vinifera HOM05D000055 ORTHO05D003892 1.2e-14 84.0 133 39.8
TAR633G1761 Trochodendron aralioides HOM05D000055 ORTHO05D003892 3.4e-14 82.4 134 38.1
SMO275G0017 Selaginella moellendorffii HOM05D000055 ORTHO05D003892 4.4e-14 82.0 131 38.9
Pp3c1_23490 Physcomitrium patens HOM05D000055 ORTHO05D003892 4.9e-13 78.6 134 36.6
Potri.001G010700 Populus trichocarpa HOM05D000055 ORTHO05D003892 8.4e-13 77.8 130 39.2
Potri.003G215201 Populus trichocarpa HOM05D000055 ORTHO05D003892 1.9e-12 76.6 130 40.0
SEGI_36554 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 4.2e-12 75.5 122 41.0
Pp3c22_18850 Physcomitrium patens HOM05D000055 ORTHO05D003892 1.6e-11 73.6 127 38.6
Duzib114G0286 Durio zibethinus HOM05D000055 ORTHO05D003892 3.5e-11 72.4 63 55.6
HPP92_020313 Vanilla planifolia HOM05D010659 ORTHO05D003892 1.7e-10 70.1 119 39.5
Sabra03G0160600 Salix brachista HOM05D000055 ORTHO05D003892 6.6e-10 68.2 65 55.4
Pp3c10_8000 Physcomitrium patens HOM05D000055 ORTHO05D003892 1.5e-09 67.0 63 55.6
SEGI_03957 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 4.3e-09 65.5 63 55.6
Ca_01420_v3 Cicer arietinum L. HOM05D000055 ORTHO05D003892 2.1e-08 63.2 105 41.0
Cc01_g05500 Coffea canephora HOM05D000055 ORTHO05D154249 1.8e-07 60.1 71 47.9
Oeu025527.2 Olea europaea HOM05D000055 ORTHO05D003892 4.0e-07 58.9 92 41.3
Ca_05252_v3 Cicer arietinum L. HOM05D000055 ORTHO05D003892 6.9e-07 58.2 107 39.3
Psat1g035360 Pisum sativum HOM05D000260 ORTHO05D000318 6.9e-07 58.2 76 39.5
Atru.chr3.2173 Acer truncatum HOM05D000055 ORTHO05D003892 2.0e-06 56.6 49 57.1
Mapoly0028s0019 Marchantia polymorpha HOM05D000055 ORTHO05D003892 7.6e-06 54.7 87 34.5
Medtr5g059910 Medicago truncatula HOM05D000083 ORTHO05D001732 7.6e-06 54.7 66 43.9
PRCOL_00002034 Prasinoderma coloniale HOM05D000083 ORTHO05D003582 9.9e-06 54.3 134 28.4


User provided reference genes

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