Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g19780 Coffea canephora HOM05D002981 ORTHO05D031299 3.2e-59 231.5 113 100.0
EL10Ac4g09830 Beta vulgaris HOM05D002981 ORTHO05D003725 1.3e-07 60.1 29 89.7
Gohir.D12G129900 Gossypium hirsutum HOM05D002981 ORTHO05D003725 1.3e-07 60.1 29 89.7
Gorai.008G141100 Gossypium raimondii HOM05D002981 ORTHO05D003725 1.3e-07 60.1 29 89.7
Oeu013220.1 Olea europaea HOM05D002981 ORTHO05D003725 1.3e-07 60.1 40 72.5
arahy.Tifrunner.gnm1.ann1.FDR7V2 Arachis hypogaea HOM05D002981 ORTHO05D003725 1.7e-07 59.7 37 78.4
Atru.chr5.1047 Acer truncatum HOM05D002981 ORTHO05D003725 2.2e-07 59.3 37 78.4
CSS0025736 Camellia sinensis var. sinensis HOM05D002981 ORTHO05D003725 2.2e-07 59.3 37 78.4
CANSAT54G0071 Cannabis sativa HOM05D002981 ORTHO05D003725 2.2e-07 59.3 37 78.4
Ciclev10020618m.g Citrus clementina HOM05D002981 ORTHO05D003725 2.2e-07 59.3 37 78.4
COL.COLO4_23259 Corchorus olitorius HOM05D002981 ORTHO05D003725 2.2e-07 59.3 37 78.4
Duzib133G0744 Durio zibethinus HOM05D002981 ORTHO05D003725 2.2e-07 59.3 37 78.4
Duzib211G0560 Durio zibethinus HOM05D002981 ORTHO05D003725 2.2e-07 59.3 37 78.4
Hma1.2p1_0008F-1.1_g005760 Hydrangea macrophylla HOM05D002981 ORTHO05D003725 2.2e-07 59.3 37 78.4
Oeu053701.1 Olea europaea HOM05D002981 ORTHO05D003725 2.2e-07 59.3 37 78.4
Peaxi162Scf00673g00127 Petunia axillaris HOM05D002981 ORTHO05D003725 2.2e-07 59.3 37 78.4
SalBow7G4351 Salvia bowleyana HOM05D002981 ORTHO05D003725 2.2e-07 59.3 37 78.4
Hund07135 Selenicereus undatus HOM05D002981 ORTHO05D003725 2.2e-07 59.3 37 78.4
Sc16g0008930 Simmondsia chinensis HOM05D002981 ORTHO05D003725 2.2e-07 59.3 37 78.4
THA.LOC104817468 Tarenaya hassleriana HOM05D002981 ORTHO05D003725 2.2e-07 59.3 37 78.4
unitig_21.g20026 Utricularia gibba HOM05D002981 ORTHO05D003725 2.2e-07 59.3 37 78.4
GSVIVG01031219001 Vitis vinifera HOM05D002981 ORTHO05D003725 2.2e-07 59.3 37 78.4
Gohir.A12G126400 Gossypium hirsutum HOM05D002981 ORTHO05D003725 2.9e-07 58.9 29 86.2
Nitab4.5_0009033g0020 Nicotiana tabacum HOM05D002981 ORTHO05D003725 2.9e-07 58.9 37 75.7
Solyc01g100320.3 Solanum lycopersicum HOM05D002981 ORTHO05D003725 2.9e-07 58.9 37 75.7
Sopen01g043830 Solanum pennellii HOM05D002981 ORTHO05D003725 2.9e-07 58.9 37 75.7
PGSC0003DMG400002779 Solanum tuberosum HOM05D002981 ORTHO05D003725 2.9e-07 58.9 37 75.7
Thecc.01G310600 Theobroma cacao HOM05D002981 ORTHO05D003725 2.9e-07 58.9 37 75.7
TWI75G0141 Tripterygium wilfordii HOM05D002981 ORTHO05D003725 2.9e-07 58.9 37 75.7
HanXRQChr10g0299231 Helianthus annuus HOM05D002981 ORTHO05D003725 3.7e-07 58.5 37 78.4
Lsat_1_v5_gn_5_102801 Lactuca sativa HOM05D002981 ORTHO05D003725 3.7e-07 58.5 37 78.4
vmacro21240 Vaccinium macrocarpon HOM05D000161 ORTHO05D000111 3.7e-07 58.5 42 64.3
arahy.Tifrunner.gnm1.ann1.VAQ4DL Arachis hypogaea HOM05D002981 ORTHO05D003725 4.9e-07 58.2 37 75.7
Cpa.g.sc18.9 Carica papaya HOM05D002981 ORTHO05D003725 4.9e-07 58.2 37 75.7
CDE02G3360 Ceratophyllum demersum HOM05D002981 ORTHO05D003725 4.9e-07 58.2 37 75.7
CDE09G1190 Ceratophyllum demersum HOM05D002981 ORTHO05D003725 4.9e-07 58.2 37 75.7
Cc02_g34820 Coffea canephora HOM05D002981 ORTHO05D003725 4.9e-07 58.2 37 75.7
Glyma.02G014000 Glycine max HOM05D002981 ORTHO05D003725 4.9e-07 58.2 37 75.7
Glyma.10G014700 Glycine max HOM05D002981 ORTHO05D003725 4.9e-07 58.2 37 75.7
Gohir.A08G118600 Gossypium hirsutum HOM05D002981 ORTHO05D003725 4.9e-07 58.2 37 75.7
Gohir.D08G139400 Gossypium hirsutum HOM05D002981 ORTHO05D003725 4.9e-07 58.2 37 75.7
Gorai.004G143300 Gossypium raimondii HOM05D002981 ORTHO05D003725 4.9e-07 58.2 37 75.7
Oeu064809.1 Olea europaea HOM05D002981 ORTHO05D003725 4.9e-07 58.2 37 75.7
Phvul.007G215900 Phaseolus vulgaris HOM05D002981 ORTHO05D003725 4.9e-07 58.2 37 75.7
PGR044G1530 Punica granatum HOM05D002981 ORTHO05D003725 4.9e-07 58.2 37 75.7
Hund21746 Selenicereus undatus HOM05D002981 ORTHO05D003725 4.9e-07 58.2 37 75.7
THA.LOC104802194 Tarenaya hassleriana HOM05D002981 ORTHO05D003725 4.9e-07 58.2 37 75.7
vmacro01554 Vaccinium macrocarpon HOM05D002981 ORTHO05D003725 4.9e-07 58.2 37 75.7
VMungo0720G0399 Vigna mungo HOM05D002981 ORTHO05D003725 4.9e-07 58.2 37 75.7
arahy.Tifrunner.gnm1.ann1.B5R1P0 Arachis hypogaea HOM05D002981 ORTHO05D031299 6.4e-07 57.8 30 83.3
MSTRG.27951 Avicennia marina HOM05D002981 ORTHO05D003725 6.4e-07 57.8 37 75.7
MSTRG.5139 Avicennia marina HOM05D002981 ORTHO05D003725 6.4e-07 57.8 37 75.7
CiPaw.08G156600 Carya illinoinensis HOM05D002981 ORTHO05D003725 6.4e-07 57.8 37 75.7
AUR62000684 Chenopodium quinoa HOM05D002981 ORTHO05D003725 6.4e-07 57.8 37 75.7
AUR62005272 Chenopodium quinoa HOM05D002981 ORTHO05D003725 6.4e-07 57.8 37 75.7
ClCG09G005250 Citrullus lanatus HOM05D002981 ORTHO05D003725 6.4e-07 57.8 37 73.0
MELO3C015939.2 Cucumis melo HOM05D002981 ORTHO05D003725 6.4e-07 57.8 37 75.7
CsaV3_7G029820 Cucumis sativus L. HOM05D002981 ORTHO05D003725 6.4e-07 57.8 37 75.7
Eucgr.K03531 Eucalyptus grandis HOM05D002981 ORTHO05D003725 6.4e-07 57.8 37 73.0
Gorai.007G124200 Gossypium raimondii HOM05D002981 ORTHO05D003725 6.4e-07 57.8 37 75.7
Lj5A337G17 Lonicera japonica HOM05D002981 ORTHO05D003725 6.4e-07 57.8 30 80.0
Manes.05G002000 Manihot esculenta HOM05D002981 ORTHO05D003725 6.4e-07 57.8 37 75.7
Nitab4.5_0000368g0270 Nicotiana tabacum HOM05D002981 ORTHO05D003725 6.4e-07 57.8 37 73.0
Prupe.6G315000 Prunus persica HOM05D002981 ORTHO05D003725 6.4e-07 57.8 37 73.0
SalBow3G0105 Salvia bowleyana HOM05D002981 ORTHO05D003725 6.4e-07 57.8 37 75.7
SGA_v2.0_scaffold81G26125 Striga asiatica HOM05D002981 ORTHO05D003725 6.4e-07 57.8 37 75.7
ATR0706G068 Amborella trichopoda HOM05D002981 ORTHO05D003725 8.3e-07 57.4 37 73.0
CAN.G1273.1 Capsicum annuum HOM05D002981 ORTHO05D003725 8.3e-07 57.4 37 73.0
Duzib138G0226 Durio zibethinus HOM05D002981 ORTHO05D003725 8.3e-07 57.4 37 75.7
Rhsim05G0133600 Rhododendron simsii HOM05D002981 ORTHO05D003725 8.3e-07 57.4 37 75.7
Sed0023511 Sechium edule HOM05D002981 ORTHO05D003725 8.3e-07 57.4 29 79.3
SGA_v2.0_scaffold80G25880 Striga asiatica HOM05D002981 ORTHO05D003725 8.3e-07 57.4 37 75.7
TAR362G0641 Trochodendron aralioides HOM05D002981 ORTHO05D003725 8.3e-07 57.4 37 75.7
TAR633G1423 Trochodendron aralioides HOM05D002981 ORTHO05D003725 8.3e-07 57.4 37 75.7
vmacro19723 Vaccinium macrocarpon HOM05D002981 ORTHO05D003725 8.3e-07 57.4 37 75.7
Aqoxy2G02233 Aquilegia oxysepala HOM05D002981 ORTHO05D031299 1.1e-06 57.0 31 80.6
AL4G47030 Arabidopsis lyrata HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 75.7
AT2G47470 Arabidopsis thaliana HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 75.7
BcaB01g03165 Brassica carinata HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 75.7
Carub.0004s3019 Capsella rubella HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 75.7
Ca_10298_v3 Cicer arietinum L. HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 75.7
DCAR_029360 Daucus carota HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 75.7
Thhalv10001515m.g Eutrema salsugineum HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 75.7
FvH4_6g07230 Fragaria vesca HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 75.7
FAN02G4218 Fragaria x ananassa HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 75.7
FAN05G2722 Fragaria x ananassa HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 75.7
FAN09G2340 Fragaria x ananassa HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 75.7
FAN14G0083 Fragaria x ananassa HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 75.7
Lj9C217G8 Lonicera japonica HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 73.0
Lalb_Chr02g0146691 Lupinus albus HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 73.0
Os05g0156300 Oryza sativa ssp. japonica HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 75.7
Potri.002G198300 Populus trichocarpa HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 73.0
QL03p018289 Quercus lobata HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 73.0
RcHm_v2.0_Chr3g0456861 Rosa chinensis HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 75.7
Sabra02G0159300 Salix brachista HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 73.0
Sp4g29410 Schrenkiella parvula HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 75.7
SEGI_15151 Sequoiadendron giganteum HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 75.7
Sc09g0002680 Simmondsia chinensis HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 73.0
unitig_26.g10138 Utricularia gibba HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 75.7
Zm00001eb282710 Zea mays HOM05D002981 ORTHO05D003725 1.1e-06 57.0 37 75.7
arahy.Tifrunner.gnm1.ann1.QGM0MN Arachis hypogaea HOM05D002981 ORTHO05D003725 1.4e-06 56.6 36 75.0
BcaC01g05028 Brassica carinata HOM05D002981 ORTHO05D003725 1.4e-06 56.6 37 73.0
A03p25980 Brassica napus HOM05D002981 ORTHO05D003725 1.4e-06 56.6 37 73.0
C03p30980 Brassica napus HOM05D002981 ORTHO05D003725 1.4e-06 56.6 37 73.0
BolC3t15449H Brassica oleracea HOM05D002981 ORTHO05D003725 1.4e-06 56.6 37 73.0
BraA03t11815Z Brassica rapa HOM05D002981 ORTHO05D003725 1.4e-06 56.6 37 73.0
Dinv30871 Davidia involucrata HOM05D002981 ORTHO05D003725 1.4e-06 56.6 37 73.0
Nn3g21634 Nelumbo nucifera HOM05D002981 ORTHO05D003725 1.4e-06 56.6 37 73.0
Nn4g25650 Nelumbo nucifera HOM05D002981 ORTHO05D003725 1.4e-06 56.6 37 73.0
PSO210G1046 Papaver somniferum HOM05D002981 ORTHO05D003725 1.4e-06 56.6 37 73.0
PSO761G0326 Papaver somniferum HOM05D002981 ORTHO05D003725 1.4e-06 56.6 37 73.0
Rhsim11G0094000 Rhododendron simsii HOM05D002981 ORTHO05D003725 1.4e-06 56.6 37 73.0
SMO201G0065 Selaginella moellendorffii HOM05D002981 ORTHO05D003725 1.4e-06 56.6 59 54.2
TAR365G0113 Trochodendron aralioides HOM05D002981 ORTHO05D003725 1.4e-06 56.6 37 70.3
AagrBONN_evm.TU.Sc2ySwM_228.808 Anthoceros agrestis HOM05D002981 ORTHO05D003725 1.9e-06 56.2 37 73.0
Lalb_Chr21g0309481 Lupinus albus HOM05D002981 ORTHO05D003725 1.9e-06 56.2 37 73.0
Manes.09G175600 Manihot esculenta HOM05D002981 ORTHO05D003725 1.9e-06 56.2 37 70.3
Mapoly0016s0144 Marchantia polymorpha HOM05D002981 ORTHO05D003725 1.9e-06 56.2 37 70.3
TWI56G0814 Tripterygium wilfordii HOM05D002981 ORTHO05D003725 1.9e-06 56.2 37 73.0
HPP92_016960 Vanilla planifolia HOM05D002981 ORTHO05D003725 1.9e-06 56.2 37 73.0
CSS0028783 Camellia sinensis var. sinensis HOM05D002981 ORTHO05D003725 2.4e-06 55.8 37 70.3
Cc00_g18950 Coffea canephora HOM05D002981 ORTHO05D003725 2.4e-06 55.8 30 83.3
DCAR_005415 Daucus carota HOM05D002981 ORTHO05D003725 2.4e-06 55.8 30 80.0
ECA234G4491 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.4e-06 55.8 29 82.8
PSO675G3700 Papaver somniferum HOM05D001581 ORTHO05D001479 2.4e-06 55.8 30 76.7
Potri.014G122800 Populus trichocarpa HOM05D002981 ORTHO05D003725 2.4e-06 55.8 37 70.3
QL12p028974 Quercus lobata HOM05D002981 ORTHO05D003725 2.4e-06 55.8 37 73.0
Sed0000157 Sechium edule HOM05D002981 ORTHO05D003725 2.4e-06 55.8 37 73.0
SMO306G0009 Selaginella moellendorffii HOM05D002981 ORTHO05D003725 2.4e-06 55.8 38 65.8
TWI18G0728 Tripterygium wilfordii HOM05D002981 ORTHO05D003725 2.4e-06 55.8 37 73.0
Zm00001eb131360 Zea mays HOM05D002981 ORTHO05D003725 2.4e-06 55.8 37 73.0
Aqoxy2G02802 Aquilegia oxysepala HOM05D002981 ORTHO05D003725 3.2e-06 55.5 37 73.0
Gohir.A07G127500 Gossypium hirsutum HOM05D002981 ORTHO05D003725 3.2e-06 55.5 37 70.3
Gorai.001G143100 Gossypium raimondii HOM05D002981 ORTHO05D003725 3.2e-06 55.5 37 70.3
Lj5g0008352 Lotus japonicus HOM05D002981 ORTHO05D003725 3.2e-06 55.5 37 73.0
MD04G1195300 Malus domestica HOM05D002981 ORTHO05D003725 3.2e-06 55.5 37 70.3
MD12G1207400 Malus domestica HOM05D002981 ORTHO05D003725 3.2e-06 55.5 37 70.3
Os01g0339900 Oryza sativa ssp. japonica HOM05D002981 ORTHO05D003725 3.2e-06 55.5 37 73.0
arahy.Tifrunner.gnm1.ann1.6077R1 Arachis hypogaea HOM05D002981 ORTHO05D003725 4.1e-06 55.1 38 71.1
Haze_05013 Corylus avellana HOM05D002981 ORTHO05D003725 4.1e-06 55.1 37 70.3
DCAR_025272 Daucus carota HOM05D002981 ORTHO05D003725 4.1e-06 55.1 29 79.3
Dinv24424 Davidia involucrata HOM05D002981 ORTHO05D003725 4.1e-06 55.1 37 70.3
ECA234G2827 Erigeron canadensis HOM05D002981 ORTHO05D003725 4.1e-06 55.1 37 73.0
Peaxi162Scf00071g00438 Petunia axillaris HOM05D002981 ORTHO05D003725 4.1e-06 55.1 29 79.3
BcaB02g08769 Brassica carinata HOM05D002981 ORTHO05D003725 5.4e-06 54.7 37 73.0
A05p00460 Brassica napus HOM05D002981 ORTHO05D003725 5.4e-06 54.7 37 73.0
C04p00410 Brassica napus HOM05D002981 ORTHO05D003725 5.4e-06 54.7 37 73.0
BolC4t21686H Brassica oleracea HOM05D002981 ORTHO05D003725 5.4e-06 54.7 37 73.0
BraA05t19044Z Brassica rapa HOM05D002981 ORTHO05D003725 5.4e-06 54.7 37 73.0
Medtr1g087520 Medicago truncatula HOM05D002981 ORTHO05D003725 5.4e-06 54.7 37 73.0
Psat3g013080 Pisum sativum HOM05D002981 ORTHO05D003725 5.4e-06 54.7 37 67.6
arahy.Tifrunner.gnm1.ann1.KJ6PEZ Arachis hypogaea HOM05D002981 ORTHO05D003725 7.1e-06 54.3 37 70.3
arahy.Tifrunner.gnm1.ann1.Z077FQ Arachis hypogaea HOM05D002981 ORTHO05D003725 7.1e-06 54.3 36 72.2
CiPaw.07G115400 Carya illinoinensis HOM05D002981 ORTHO05D003725 7.1e-06 54.3 37 70.3
Haze_04080 Corylus avellana HOM05D002981 ORTHO05D003725 7.1e-06 54.3 37 70.3
Glyma.19G229000 Glycine max HOM05D002981 ORTHO05D003725 7.1e-06 54.3 37 70.3
Aa31LG1G28770 Aethionema arabicum HOM05D002981 ORTHO05D003725 9.2e-06 53.9 37 70.3
SHI12762 Sapria himalayana HOM05D002981 ORTHO05D003725 9.2e-06 53.9 37 70.3
TPR.G1663 Trifolium pratense HOM05D002981 ORTHO05D003725 9.2e-06 53.9 37 67.6
TPR.G19768 Trifolium pratense HOM05D002981 ORTHO05D003725 9.2e-06 53.9 37 73.0


User provided reference genes

Program Settings