Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g19580 Coffea canephora HOM05D000595 ORTHO05D004141 2.5e-121 438.7 209 100.0
Dinv37419 Davidia involucrata HOM05D000595 ORTHO05D004141 1.2e-88 330.1 191 80.1
Cc08_g05430 Coffea canephora HOM05D000595 ORTHO05D004141 2.1e-88 329.3 191 83.2
Lj8A330G11 Lonicera japonica HOM05D000595 ORTHO05D004141 6.3e-85 317.8 191 77.5
CSS0032199 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D004141 1.8e-84 316.2 191 75.9
CAN.G1731.5 Capsicum annuum HOM05D000595 ORTHO05D004141 1.8e-84 316.2 196 73.5
Peaxi162Scf00053g00618 Petunia axillaris HOM05D000595 ORTHO05D004141 5.4e-84 314.7 191 74.3
Rhsim11G0034700 Rhododendron simsii HOM05D000595 ORTHO05D004141 7.0e-84 314.3 191 76.4
Oeu042200.2 Olea europaea HOM05D000595 ORTHO05D004141 9.1e-84 313.9 191 74.3
Nitab4.5_0000985g0070 Nicotiana tabacum HOM05D000595 ORTHO05D004141 7.7e-83 310.8 191 74.9
Solyc08g075530.3 Solanum lycopersicum HOM05D000595 ORTHO05D004141 1.0e-82 310.5 191 73.8
Sopen08g024190 Solanum pennellii HOM05D000595 ORTHO05D004141 1.7e-82 309.7 191 73.8
SGA_v2.0_scaffold111G31354 Striga asiatica HOM05D000595 ORTHO05D004141 3.8e-82 308.5 191 72.8
SalBow4G2071 Salvia bowleyana HOM05D000595 ORTHO05D004141 5.0e-82 308.1 191 73.3
Nitab4.5_0000030g0360 Nicotiana tabacum HOM05D000595 ORTHO05D004141 6.6e-82 307.8 191 73.3
Medtr5g026610 Medicago truncatula HOM05D000595 ORTHO05D004141 8.6e-82 307.4 193 73.1
Psat2g142760 Pisum sativum HOM05D000595 ORTHO05D004141 5.5e-81 304.7 194 72.7
Actinidia32782 Actinidia chinensis HOM05D000595 ORTHO05D004141 7.2e-81 304.3 191 73.3
Ca_25085_v3 Cicer arietinum L. HOM05D000595 ORTHO05D004141 1.2e-80 303.5 190 73.2
Migut.E01361 Erythranthe guttata HOM05D000595 ORTHO05D004141 2.1e-80 302.8 192 72.9
Lj2g0003822 Lotus japonicus HOM05D000595 ORTHO05D004141 2.8e-80 302.4 193 72.5
MD00G1148100 Malus domestica HOM05D000595 ORTHO05D004141 2.8e-80 302.4 191 73.8
Prupe.5G018900 Prunus persica HOM05D000595 ORTHO05D004141 3.6e-80 302.0 191 73.3
AUR62007422 Chenopodium quinoa HOM05D000595 ORTHO05D004141 6.1e-80 301.2 191 72.3
Phvul.002G127000 Phaseolus vulgaris HOM05D000595 ORTHO05D004141 6.1e-80 301.2 193 72.5
EL10Ac5g11905 Beta vulgaris HOM05D000595 ORTHO05D004141 8.0e-80 300.8 191 72.3
Glyma.04G123900 Glycine max HOM05D000595 ORTHO05D004141 1.0e-79 300.4 194 72.7
TPR.G17247 Trifolium pratense HOM05D000595 ORTHO05D004141 1.4e-79 300.1 193 72.0
Manes.15G187301 Manihot esculenta HOM05D000595 ORTHO05D004141 2.3e-79 299.3 191 73.8
TAR629G2634 Trochodendron aralioides HOM05D000595 ORTHO05D004141 2.3e-79 299.3 191 73.3
vmacro00079 Vaccinium macrocarpon HOM05D000595 ORTHO05D004141 2.3e-79 299.3 216 67.6
GSVIVG01022815001 Vitis vinifera HOM05D000595 ORTHO05D004141 3.0e-79 298.9 191 74.9
MSTRG.24716 Avicennia marina HOM05D000595 ORTHO05D004141 8.9e-79 297.4 191 70.7
Psat2g142920 Pisum sativum HOM05D000595 ORTHO05D004141 8.9e-79 297.4 195 72.3
Hund14328 Selenicereus undatus HOM05D000595 ORTHO05D004141 8.9e-79 297.4 194 71.6
FvH4_5g24150 Fragaria vesca HOM05D000595 ORTHO05D004141 2.0e-78 296.2 191 74.9
FAN13G2264 Fragaria x ananassa HOM05D000595 ORTHO05D004141 2.0e-78 296.2 191 74.3
QL02p060347 Quercus lobata HOM05D000595 ORTHO05D004141 2.0e-78 296.2 191 72.3
DCAR_004519 Daucus carota HOM05D000595 ORTHO05D004141 2.6e-78 295.8 191 71.2
QL02p060306 Quercus lobata HOM05D000595 ORTHO05D004141 3.4e-78 295.4 191 72.3
Eucgr.E01209 Eucalyptus grandis HOM05D000595 ORTHO05D004141 4.4e-78 295.0 191 72.3
Haze_07995 Corylus avellana HOM05D000595 ORTHO05D004141 5.7e-78 294.7 191 72.8
Lalb_Chr09g0325191 Lupinus albus HOM05D000595 ORTHO05D004141 5.7e-78 294.7 193 72.0
Sc07g0008260 Simmondsia chinensis HOM05D000595 ORTHO05D004141 5.7e-78 294.7 191 72.8
TPR.G17274 Trifolium pratense HOM05D000595 ORTHO05D004141 9.8e-78 293.9 193 69.9
VMungo1215G0102 Vigna mungo HOM05D000595 ORTHO05D004141 9.8e-78 293.9 193 70.5
Atru.chr6.1509 Acer truncatum HOM05D000595 ORTHO05D004141 1.3e-77 293.5 191 70.2
RcHm_v2.0_Chr7g0213851 Rosa chinensis HOM05D000595 ORTHO05D004141 1.7e-77 293.1 191 73.3
Eucgr.E01212 Eucalyptus grandis HOM05D000595 ORTHO05D004141 2.2e-77 292.7 191 71.7
Cfa012657 Carpinus fangiana HOM05D000595 ORTHO05D004141 3.7e-77 292.0 191 72.8
Migut.A00539 Erythranthe guttata HOM05D000595 ORTHO05D004141 8.3e-77 290.8 183 73.2
Gohir.A02G091200 Gossypium hirsutum HOM05D000595 ORTHO05D004141 1.1e-76 290.4 194 69.1
Gohir.D02G109400 Gossypium hirsutum HOM05D000595 ORTHO05D004141 1.4e-76 290.0 191 69.6
Gorai.005G124100 Gossypium raimondii HOM05D000595 ORTHO05D004141 1.4e-76 290.0 191 69.6
AUR62027310 Chenopodium quinoa HOM05D000595 ORTHO05D004141 2.4e-76 289.3 201 67.7
arahy.Tifrunner.gnm1.ann1.BJDV4A Arachis hypogaea HOM05D000595 ORTHO05D004141 3.1e-76 288.9 194 70.1
arahy.Tifrunner.gnm1.ann1.NQH3GN Arachis hypogaea HOM05D000595 ORTHO05D004141 3.1e-76 288.9 194 70.1
Lalb_Chr16g0380651 Lupinus albus HOM05D000595 ORTHO05D004141 5.4e-76 288.1 193 70.5
CiPaw.11G104000 Carya illinoinensis HOM05D000595 ORTHO05D004141 9.2e-76 287.3 182 72.5
Nn1g02038 Nelumbo nucifera HOM05D000595 ORTHO05D004141 1.6e-75 286.6 191 71.2
Thecc.10G189800 Theobroma cacao HOM05D000595 ORTHO05D004141 2.7e-75 285.8 191 69.6
Potri.001G129600 Populus trichocarpa HOM05D000595 ORTHO05D004141 3.5e-75 285.4 187 71.1
CSS0018432 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D004141 5.9e-75 284.6 190 70.5
Ciclev10000152m.g Citrus clementina HOM05D000595 ORTHO05D004141 7.8e-75 284.3 182 72.0
TPR.G39643 Trifolium pratense HOM05D000595 ORTHO05D004141 1.0e-74 283.9 208 65.4
TWI60G0525 Tripterygium wilfordii HOM05D000595 ORTHO05D004141 1.0e-74 283.9 188 70.7
Sabra01G0099900 Salix brachista HOM05D000595 ORTHO05D004141 2.3e-74 282.7 187 72.2
HanXRQChr17g0537211 Helianthus annuus HOM05D000595 ORTHO05D004141 5.0e-74 281.6 187 67.9
Cpa.g.sc71.57 Carica papaya HOM05D000595 ORTHO05D004141 1.1e-73 280.4 191 69.1
Thecc.03G325300 Theobroma cacao HOM05D000595 ORTHO05D004141 1.1e-73 280.4 191 68.6
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 1.9e-73 279.6 191 68.1
Duzib116G0855 Durio zibethinus HOM05D000595 ORTHO05D004141 1.9e-73 279.6 191 68.1
ClCG10G000900 Citrullus lanatus HOM05D000595 ORTHO05D004141 2.5e-73 279.3 180 71.7
PGR042G2013 Punica granatum HOM05D000595 ORTHO05D004141 4.3e-73 278.5 191 67.5
DCAR_004520 Daucus carota HOM05D000595 ORTHO05D004141 7.3e-73 277.7 191 67.5
Duzib116G0431 Durio zibethinus HOM05D000595 ORTHO05D004141 7.3e-73 277.7 191 68.1
MBI04_g21145_MAGBIO Magnolia biondii HOM05D000595 ORTHO05D004141 1.6e-72 276.6 186 70.4
THA.LOC104822230 Tarenaya hassleriana HOM05D000595 ORTHO05D004141 2.1e-72 276.2 191 68.6
Aqoxy3G02180 Aquilegia oxysepala HOM05D000595 ORTHO05D004141 3.6e-72 275.4 180 71.7
MELO3C013786.2 Cucumis melo HOM05D000595 ORTHO05D004141 3.6e-72 275.4 190 67.9
Sed0017541 Sechium edule HOM05D000595 ORTHO05D004141 1.0e-71 273.9 191 66.5
CsaV3_3G000980 Cucumis sativus L. HOM05D000595 ORTHO05D004141 1.4e-71 273.5 190 67.9
Ciclev10002552m.g Citrus clementina HOM05D000595 ORTHO05D004141 1.8e-71 273.1 188 68.6
HPP92_020874 Vanilla planifolia HOM05D000595 ORTHO05D004141 4.0e-71 271.9 183 66.7
VMungo1215G1352 Vigna mungo HOM05D000595 ORTHO05D004141 6.8e-71 271.2 174 71.8
HPP92_028113 Vanilla planifolia HOM05D000595 ORTHO05D004141 1.5e-70 270.0 183 66.7
Phvul.002G126900 Phaseolus vulgaris HOM05D000595 ORTHO05D004141 2.0e-70 269.6 188 66.5
Aa31LG10G5270 Aethionema arabicum HOM05D000595 ORTHO05D004141 2.6e-70 269.2 186 70.4
GSVIVG01036945001 Vitis vinifera HOM05D000595 ORTHO05D004141 2.6e-70 269.2 174 72.4
Carub.0003s2391 Capsella rubella HOM05D000595 ORTHO05D004141 7.5e-70 267.7 179 71.5
FAN16G0455 Fragaria x ananassa HOM05D000595 ORTHO05D004141 9.8e-70 267.3 194 68.0
AT3G23640 Arabidopsis thaliana HOM05D000595 ORTHO05D004141 2.2e-69 266.2 182 71.4
Lsat_1_v5_gn_3_23561 Lactuca sativa HOM05D000595 ORTHO05D004141 2.2e-69 266.2 202 64.4
Oeu042228.5 Olea europaea HOM05D000595 ORTHO05D004141 3.7e-69 265.4 174 70.1
ECA246G1180 Erigeron canadensis HOM05D000595 ORTHO05D004141 4.9e-69 265.0 187 65.8
Oeu042203.1 Olea europaea HOM05D000595 ORTHO05D004141 8.3e-69 264.2 192 66.1
PSO782G2105 Papaver somniferum HOM05D000595 ORTHO05D004141 2.4e-68 262.7 191 65.4
Carub.0003s2390 Capsella rubella HOM05D000595 ORTHO05D004141 7.0e-68 261.2 180 68.9
PSO384G3519 Papaver somniferum HOM05D000595 ORTHO05D004141 7.0e-68 261.2 179 69.8
Thhalv10019990m.g Eutrema salsugineum HOM05D000595 ORTHO05D004141 1.2e-67 260.4 191 66.5
PSO384G3949 Papaver somniferum HOM05D000595 ORTHO05D004141 2.0e-67 259.6 175 69.7
AL3G38380 Arabidopsis lyrata HOM05D000595 ORTHO05D004141 3.5e-67 258.8 186 69.4
BraA01t03265Z Brassica rapa HOM05D000595 ORTHO05D004141 3.5e-67 258.8 175 69.7
A01p31410 Brassica napus HOM05D000595 ORTHO05D004141 1.0e-66 257.3 174 70.7
BraA01t03266Z Brassica rapa HOM05D000595 ORTHO05D004141 1.0e-66 257.3 174 70.7
BolC1t03957H Brassica oleracea HOM05D000595 ORTHO05D004141 1.7e-66 256.5 174 70.1
CDE01G0028 Ceratophyllum demersum HOM05D000595 ORTHO05D004141 1.7e-66 256.5 180 66.1
C01p39990 Brassica napus HOM05D000595 ORTHO05D004141 2.3e-66 256.1 175 69.1
C01p40000 Brassica napus HOM05D000595 ORTHO05D004141 3.0e-66 255.8 174 70.1
A01p31400 Brassica napus HOM05D000595 ORTHO05D004141 1.9e-65 253.1 179 68.2
Migut.E01363 Erythranthe guttata HOM05D000595 ORTHO05D004141 1.9e-65 253.1 197 62.4
Sp3g21340 Schrenkiella parvula HOM05D000595 ORTHO05D004141 1.9e-65 253.1 174 70.7
BcaB04g20429 Brassica carinata HOM05D000595 ORTHO05D004141 2.5e-65 252.7 175 69.7
ATR0829G165 Amborella trichopoda HOM05D000595 ORTHO05D004141 5.6e-65 251.5 191 63.4
Manes.17G004600 Manihot esculenta HOM05D000595 ORTHO05D004141 5.6e-65 251.5 192 64.6
ECA246G0927 Erigeron canadensis HOM05D000595 ORTHO05D004141 4.7e-64 248.4 191 62.3
SEGI_21462 Sequoiadendron giganteum HOM05D000595 ORTHO05D004141 8.0e-64 247.7 194 60.8
Oeu042206.1 Olea europaea HOM05D000595 ORTHO05D004141 2.6e-62 242.7 191 63.4
Oeu042195.1 Olea europaea HOM05D000595 ORTHO05D004141 2.9e-61 239.2 191 60.2
CARHR099600 Cardamine hirsuta HOM05D000595 ORTHO05D004141 8.3e-61 237.7 175 67.4
Oeu042194.1 Olea europaea HOM05D000595 ORTHO05D004141 1.1e-60 237.3 191 59.7
BcaB04g20431 Brassica carinata HOM05D000595 ORTHO05D004141 3.2e-60 235.7 174 64.9
Zm00001eb305980 Zea mays HOM05D000595 ORTHO05D004141 6.0e-59 231.5 188 61.2
Mapoly0135s0001 Marchantia polymorpha HOM05D000595 ORTHO05D004141 3.9e-58 228.8 178 60.7
Os07g0420700 Oryza sativa ssp. japonica HOM05D000595 ORTHO05D004141 6.2e-56 221.5 201 57.2
Ciclev10011016m.g Citrus clementina HOM05D000595 ORTHO05D004141 1.3e-53 213.8 165 64.2
Os07g0421300 Oryza sativa ssp. japonica HOM05D000595 ORTHO05D004141 3.7e-53 212.2 174 60.9
Pp3c4_24030 Physcomitrium patens HOM05D000595 ORTHO05D004141 3.7e-53 212.2 183 56.3
SGA_v2.0_scaffold89G27418 Striga asiatica HOM05D000595 ORTHO05D004141 5.4e-52 208.4 179 55.9
Pp3c13_11140 Physcomitrium patens HOM05D000595 ORTHO05D004141 1.7e-50 203.4 169 56.8
Pp3c3_9200 Physcomitrium patens HOM05D000595 ORTHO05D004141 3.0e-50 202.6 170 57.1
Pp3c5_4460 Physcomitrium patens HOM05D000595 ORTHO05D004141 7.3e-49 198.0 184 50.0
Zm00001eb096920 Zea mays HOM05D000595 ORTHO05D004141 2.8e-48 196.1 130 70.8
Pp3c16_2470 Physcomitrium patens HOM05D000595 ORTHO05D004141 2.0e-46 189.9 190 46.8
SMO116G0166 Selaginella moellendorffii HOM05D000595 ORTHO05D004141 2.9e-45 186.0 180 48.9
AagrBONN_evm.TU.Sc2ySwM_344.2687 Anthoceros agrestis HOM05D000595 ORTHO05D004141 1.6e-43 180.3 185 49.2
AagrBONN_evm.TU.Sc2ySwM_228.2586 Anthoceros agrestis HOM05D000595 ORTHO05D004141 2.3e-42 176.4 189 48.7
Lsat_1_v5_gn_6_67241 Lactuca sativa HOM05D000595 ORTHO05D004141 2.6e-38 162.9 136 56.6
Ciclev10013908m.g Citrus clementina HOM05D000595 ORTHO05D004141 3.2e-36 156.0 88 77.3
Cpa.g.c48289 Carica papaya HOM05D000595 ORTHO05D004141 2.9e-29 132.9 68 85.3
Lj8A331G39 Lonicera japonica HOM05D000595 ORTHO05D004141 2.1e-27 126.7 82 70.7
Pp3c19_14150 Physcomitrium patens HOM05D000595 ORTHO05D004141 1.8e-26 123.6 115 53.0
COL.COLO4_06174 Corchorus olitorius HOM05D000595 ORTHO05D004141 5.1e-26 122.1 191 38.7
FAN16G3365 Fragaria x ananassa HOM05D001806 ORTHO05D013993 6.2e-24 115.2 82 67.1
RcHm_v2.0_Chr7g0213741 Rosa chinensis HOM05D000595 ORTHO05D004141 8.4e-21 104.8 84 61.9
FAN09G4858 Fragaria x ananassa HOM05D001806 ORTHO05D013993 1.1e-17 94.4 67 67.2
PGSC0003DMG400007975 Solanum tuberosum HOM05D000595 ORTHO05D004141 2.5e-17 93.2 62 69.4


User provided reference genes

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