Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g19060 Coffea canephora HOM05D005755 ORTHO05D007006 1.4e-57 226.1 116 100.0
vmacro04890 Vaccinium macrocarpon HOM05D005755 ORTHO05D007006 4.5e-40 167.9 117 73.5
DCAR_015273 Daucus carota HOM05D005755 ORTHO05D007006 1.7e-39 166.0 116 73.3
Nitab4.5_0000061g0170 Nicotiana tabacum HOM05D005755 ORTHO05D007006 1.7e-39 166.0 114 71.9
Nitab4.5_0001721g0080 Nicotiana tabacum HOM05D005755 ORTHO05D007006 1.7e-39 166.0 114 71.9
Atru.chr12.636 Acer truncatum HOM05D005755 ORTHO05D007006 2.9e-39 165.2 111 75.7
Peaxi162Scf00373g00210 Petunia axillaris HOM05D005755 ORTHO05D007006 2.9e-39 165.2 116 71.6
Nn5g30302 Nelumbo nucifera HOM05D005755 ORTHO05D007006 3.8e-39 164.9 113 78.8
Sopen07g033930 Solanum pennellii HOM05D005755 ORTHO05D007006 1.1e-38 163.3 114 70.2
Lsat_1_v5_gn_2_46180 Lactuca sativa HOM05D005755 ORTHO05D007006 1.4e-38 162.9 115 73.0
Ciclev10033129m.g Citrus clementina HOM05D005755 ORTHO05D007006 1.9e-38 162.5 113 74.3
Solyc07g065720.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 1.9e-38 162.5 113 70.8
Dinv04676 Davidia involucrata HOM05D005755 ORTHO05D007006 2.5e-38 162.2 116 73.3
Duzib106G1131 Durio zibethinus HOM05D005755 ORTHO05D007006 2.5e-38 162.2 116 74.1
Peaxi162Scf00111g00718 Petunia axillaris HOM05D005755 ORTHO05D007006 3.2e-38 161.8 111 73.0
TAR381G1573 Trochodendron aralioides HOM05D005755 ORTHO05D007006 3.2e-38 161.8 113 74.3
PGSC0003DMG400022164 Solanum tuberosum HOM05D005755 ORTHO05D007006 7.2e-38 160.6 114 69.3
Cpa.g.sc53.20 Carica papaya HOM05D005755 ORTHO05D007006 1.2e-37 159.8 105 78.1
Duzib114G0063 Durio zibethinus HOM05D005755 ORTHO05D007006 1.2e-37 159.8 116 72.4
CSS0044562 Camellia sinensis var. sinensis HOM05D005755 ORTHO05D007006 1.6e-37 159.5 114 73.7
Thecc.10G068000 Theobroma cacao HOM05D005755 ORTHO05D007006 1.6e-37 159.5 114 71.9
QL08p056843 Quercus lobata HOM05D005755 ORTHO05D007006 2.7e-37 158.7 115 71.3
Hma1.2p1_0157F.1_g068960 Hydrangea macrophylla HOM05D005755 ORTHO05D007006 3.6e-37 158.3 116 74.1
Sopen04g020610 Solanum pennellii HOM05D005755 ORTHO05D007006 3.6e-37 158.3 114 70.2
ECA238G0308 Erigeron canadensis HOM05D005755 ORTHO05D007006 7.9e-37 157.1 114 71.1
CAN.G79.77 Capsicum annuum HOM05D005755 ORTHO05D007006 1.4e-36 156.4 109 70.6
Dinv11808 Davidia involucrata HOM05D005755 ORTHO05D007006 1.4e-36 156.4 116 70.7
Prupe.2G218600 Prunus persica HOM05D005755 ORTHO05D007006 1.4e-36 156.4 114 69.3
Manes.10G042600 Manihot esculenta HOM05D005755 ORTHO05D007006 1.8e-36 156.0 112 74.1
Solyc04g049970.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 1.8e-36 156.0 113 69.9
Gohir.A01G133200 Gossypium hirsutum HOM05D005755 ORTHO05D007006 3.0e-36 155.2 116 69.8
Gorai.002G143500 Gossypium raimondii HOM05D005755 ORTHO05D007006 5.1e-36 154.5 116 69.0
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 6.7e-36 154.1 118 69.5
Aa31LG7G12880 Aethionema arabicum HOM05D005755 ORTHO05D007006 8.8e-36 153.7 108 71.3
FvH4_7g20160 Fragaria vesca HOM05D005755 ORTHO05D007006 1.5e-35 152.9 114 69.3
THA.LOC104799357 Tarenaya hassleriana HOM05D005755 ORTHO05D007006 2.0e-35 152.5 114 68.4
Actinidia38859 Actinidia chinensis HOM05D005755 ORTHO05D007006 2.6e-35 152.1 113 69.0
FAN10G3796 Fragaria x ananassa HOM05D005755 ORTHO05D007006 2.6e-35 152.1 114 71.1
Oeu057236.1 Olea europaea HOM05D005755 ORTHO05D007006 5.7e-35 151.0 116 69.0
Sc05g0001890 Simmondsia chinensis HOM05D005755 ORTHO05D007006 7.4e-35 150.6 105 71.4
MD07G1179300 Malus domestica HOM05D005755 ORTHO05D007006 9.7e-35 150.2 114 69.3
Rhsim09G0154200 Rhododendron simsii HOM05D001639 ORTHO05D004140 9.7e-35 150.2 142 60.6
Hund18453 Selenicereus undatus HOM05D005755 ORTHO05D007006 9.7e-35 150.2 107 69.2
CsaV3_3G030820 Cucumis sativus L. HOM05D005755 ORTHO05D007006 1.3e-34 149.8 114 69.3
Eucgr.G02800 Eucalyptus grandis HOM05D005755 ORTHO05D007006 1.3e-34 149.8 113 68.1
Oeu017232.1 Olea europaea HOM05D005755 ORTHO05D007006 1.3e-34 149.8 116 68.1
CiPaw.15G145100 Carya illinoinensis HOM05D005755 ORTHO05D007006 2.2e-34 149.1 114 70.2
Glyma.05G164400 Glycine max HOM05D005755 ORTHO05D007006 2.2e-34 149.1 113 70.8
FAN01G0677 Fragaria x ananassa HOM05D005755 ORTHO05D007006 2.8e-34 148.7 114 70.2
HPP92_016041 Vanilla planifolia HOM05D005755 ORTHO05D007006 3.7e-34 148.3 107 72.9
GSVIVG01016339001 Vitis vinifera HOM05D005755 ORTHO05D007006 3.7e-34 148.3 113 69.0
PGR142G0594 Punica granatum HOM05D005755 ORTHO05D007006 4.8e-34 147.9 107 70.1
AUR62037483 Chenopodium quinoa HOM05D005755 ORTHO05D007006 6.3e-34 147.5 105 71.4
Migut.F01798 Erythranthe guttata HOM05D005755 ORTHO05D007006 6.3e-34 147.5 108 70.4
Glyma.08G121800 Glycine max HOM05D005755 ORTHO05D007006 6.3e-34 147.5 106 72.6
MD01G1131200 Malus domestica HOM05D005755 ORTHO05D007006 6.3e-34 147.5 114 68.4
Sed0018161 Sechium edule HOM05D005755 ORTHO05D007006 6.3e-34 147.5 114 66.7
MSTRG.8164 Avicennia marina HOM05D005755 ORTHO05D007006 8.2e-34 147.1 115 68.7
AUR62004768 Chenopodium quinoa HOM05D005755 ORTHO05D007006 8.2e-34 147.1 111 68.5
RcHm_v2.0_Chr1g0364121 Rosa chinensis HOM05D005755 ORTHO05D007006 1.1e-33 146.7 114 68.4
FAN06G3582 Fragaria x ananassa HOM05D005755 ORTHO05D007006 1.4e-33 146.4 112 66.1
Phvul.002G244400 Phaseolus vulgaris HOM05D005755 ORTHO05D007006 3.1e-33 145.2 106 69.8
Aqoxy3G01116 Aquilegia oxysepala HOM05D005755 ORTHO05D007006 7.0e-33 144.1 105 69.5
BcaC03g14561 Brassica carinata HOM05D005755 ORTHO05D007006 7.0e-33 144.1 116 64.7
C02p20090 Brassica napus HOM05D005755 ORTHO05D007006 7.0e-33 144.1 116 64.7
Potri.008G044200 Populus trichocarpa HOM05D005755 ORTHO05D007006 7.0e-33 144.1 114 67.5
BolC2t08139H Brassica oleracea HOM05D005755 ORTHO05D007006 9.1e-33 143.7 116 63.8
CDE10G1261 Ceratophyllum demersum HOM05D005755 ORTHO05D007006 9.1e-33 143.7 112 66.1
Sp6g14210 Schrenkiella parvula HOM05D005755 ORTHO05D007006 9.1e-33 143.7 107 66.4
Gohir.D01G118000 Gossypium hirsutum HOM05D005755 ORTHO05D007006 1.2e-32 143.3 134 59.7
MBI19_g25006_MAGBIO Magnolia biondii HOM05D005755 ORTHO05D007006 3.5e-32 141.7 114 68.4
Thhalv10015092m.g Eutrema salsugineum HOM05D005755 ORTHO05D007006 4.5e-32 141.4 107 67.3
TWI15G0398 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 4.5e-32 141.4 112 67.0
FAN03G2322 Fragaria x ananassa HOM05D005755 ORTHO05D007006 5.9e-32 141.0 109 68.8
Ca_19066_v3 Cicer arietinum L. HOM05D005755 ORTHO05D007006 7.7e-32 140.6 111 66.7
EL10Ac7g15953 Beta vulgaris HOM05D005755 ORTHO05D007006 1.0e-31 140.2 105 65.7
Cfa019629 Carpinus fangiana HOM05D005755 ORTHO05D007006 1.0e-31 140.2 112 65.2
BraA02t06267Z Brassica rapa HOM05D005755 ORTHO05D007006 1.3e-31 139.8 116 61.2
TPR.G12499 Trifolium pratense HOM05D005755 ORTHO05D007006 1.3e-31 139.8 104 67.3
CANSAT11G0923 Cannabis sativa HOM05D005755 ORTHO05D007006 1.7e-31 139.4 114 65.8
CARHR264900 Cardamine hirsuta HOM05D005755 ORTHO05D007006 1.7e-31 139.4 113 61.1
EL10Ac3g06003 Beta vulgaris HOM05D005755 ORTHO05D007006 2.9e-31 138.7 105 64.8
BcaB08g35550 Brassica carinata HOM05D005755 ORTHO05D007006 2.9e-31 138.7 106 66.0
ATR1096G048 Amborella trichopoda HOM05D005755 ORTHO05D007006 3.8e-31 138.3 107 68.2
Ah.04g160050 Amaranthus hybridus HOM05D005755 ORTHO05D007006 6.5e-31 137.5 109 65.1
EL10Ac6g13227 Beta vulgaris HOM05D005755 ORTHO05D007006 6.5e-31 137.5 105 64.8
SalBow1G5334 Salvia bowleyana HOM05D005755 ORTHO05D007006 6.5e-31 137.5 106 68.9
SalBow1G7067 Salvia bowleyana HOM05D005755 ORTHO05D007006 6.5e-31 137.5 106 68.9
AT5G51960 Arabidopsis thaliana HOM05D005755 ORTHO05D007006 1.5e-30 136.3 107 63.6
A10p09750 Brassica napus HOM05D005755 ORTHO05D007006 1.5e-30 136.3 106 63.2
VMungo0251G2378 Vigna mungo HOM05D001210 ORTHO05D001036 1.5e-30 136.3 101 70.3
Sabra08G0030600 Salix brachista HOM05D005755 ORTHO05D007006 1.9e-30 136.0 112 65.2
SalBow3G2244 Salvia bowleyana HOM05D005755 ORTHO05D007006 1.9e-30 136.0 106 67.9
SalBow3G3619 Salvia bowleyana HOM05D005755 ORTHO05D007006 1.9e-30 136.0 106 67.9
EL10Ac7g17935 Beta vulgaris HOM05D005755 ORTHO05D007006 3.2e-30 135.2 102 65.7
BraA10t43055Z Brassica rapa HOM05D005755 ORTHO05D007006 4.2e-30 134.8 106 62.3
SGA_v2.0_scaffold71G24037 Striga asiatica HOM05D005755 ORTHO05D007006 4.2e-30 134.8 117 62.4
TWI38G1562 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 4.2e-30 134.8 111 64.9
Medtr6g068850 Medicago truncatula HOM05D005755 ORTHO05D007006 5.5e-30 134.4 102 64.7
BcaC04g20616 Brassica carinata HOM05D005755 ORTHO05D007006 7.2e-30 134.0 106 62.3
C09p41470 Brassica napus HOM05D005755 ORTHO05D007006 7.2e-30 134.0 106 62.3
BolC9t57024H Brassica oleracea HOM05D005755 ORTHO05D007006 7.2e-30 134.0 106 62.3
Lj4g0006534 Lotus japonicus HOM05D005755 ORTHO05D007006 7.2e-30 134.0 113 64.6
Lalb_Chr07g0186081 Lupinus albus HOM05D005755 ORTHO05D007006 7.2e-30 134.0 108 64.8
PSO675G6920 Papaver somniferum HOM05D005755 ORTHO05D007006 7.2e-30 134.0 103 65.0
Potri.010G217300 Populus trichocarpa HOM05D005755 ORTHO05D007006 9.4e-30 133.7 105 65.7
AL8G32330 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 1.2e-29 133.3 107 62.6
BcaB05g23952 Brassica carinata HOM05D005755 ORTHO05D007006 1.6e-29 132.9 118 58.5
Carub.0008s1205 Capsella rubella HOM05D005755 ORTHO05D007006 2.7e-29 132.1 105 63.8
AL8G26290 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 6.1e-29 131.0 105 61.9
Psat1g119080 Pisum sativum HOM05D005755 ORTHO05D007006 6.1e-29 131.0 104 62.5
arahy.Tifrunner.gnm1.ann1.FL0JYU Arachis hypogaea HOM05D005755 ORTHO05D007006 2.3e-28 129.0 108 60.2
arahy.Tifrunner.gnm1.ann1.QA5RE0 Arachis hypogaea HOM05D005755 ORTHO05D007006 2.3e-28 129.0 108 60.2
unitig_8.g3685 Utricularia gibba HOM05D005755 ORTHO05D007006 8.8e-28 127.1 102 65.7
EL10Ac5g11654 Beta vulgaris HOM05D005755 ORTHO05D007006 2.0e-27 125.9 99 63.6
Zm00001eb235420 Zea mays HOM05D005755 ORTHO05D007006 7.4e-27 124.0 108 62.0
Os11g0133900 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 1.3e-26 123.2 102 61.8
Zm00001eb163500 Zea mays HOM05D005755 ORTHO05D007006 2.8e-26 122.1 108 61.1
SEGI_41538 Sequoiadendron giganteum HOM05D005755 ORTHO05D007006 8.2e-26 120.6 105 59.0
Glyma.19G087500 Glycine max HOM05D005755 ORTHO05D007006 1.0e-20 103.6 87 63.2
Os12g0131266 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 5.2e-20 101.3 86 60.5
TPR.G31353 Trifolium pratense HOM05D005755 ORTHO05D007006 6.8e-20 100.9 62 75.8
SMO207G0003 Selaginella moellendorffii HOM05D005755 ORTHO05D007006 2.2e-18 95.9 106 48.1
Mapoly0006s0175 Marchantia polymorpha HOM05D005755 ORTHO05D007006 1.1e-17 93.6 105 44.8
AagrBONN_evm.TU.Sc2ySwM_362.2659 Anthoceros agrestis HOM05D005755 ORTHO05D007006 1.8e-17 92.8 103 46.6
HanXRQChr14g0436521 Helianthus annuus HOM05D005755 ORTHO05D007006 1.3e-15 86.7 78 59.0
Pp3c3_10790 Physcomitrium patens HOM05D005755 ORTHO05D007006 1.3e-15 86.7 102 47.1
Oeu057237.1 Olea europaea HOM05D005755 ORTHO05D007006 6.5e-15 84.3 82 56.1
Lj3g0006677 Lotus japonicus HOM05D005755 ORTHO05D007006 9.4e-14 80.5 76 59.2
Prupe.2G218400 Prunus persica HOM05D005755 ORTHO05D007006 4.7e-13 78.2 120 45.8
Haze_18895 Corylus avellana HOM05D005755 ORTHO05D007006 6.1e-13 77.8 89 50.6
A02p12030 Brassica napus HOM05D005755 ORTHO05D007006 8.0e-13 77.4 80 52.5
AL792U10010 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 5.7e-11 71.2 69 53.6
Lj3g0023846 Lotus japonicus HOM05D005755 ORTHO05D007006 5.7e-11 71.2 75 56.0
CBR_g23899 Chara braunii HOM05D005755 ORTHO05D007006 6.3e-10 67.8 96 40.6
SEGI_15077 Sequoiadendron giganteum HOM05D002017 ORTHO05D007006 3.3e-06 55.5 58 51.7


User provided reference genes

Program Settings