Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g18950 Coffea canephora HOM05D002981 ORTHO05D003725 8.6e-87 323.6 156 100.0
GSVIVG01031219001 Vitis vinifera HOM05D002981 ORTHO05D003725 3.6e-16 89.0 88 60.2
THA.LOC104817468 Tarenaya hassleriana HOM05D002981 ORTHO05D003725 4.7e-16 88.6 88 55.7
SalBow7G4351 Salvia bowleyana HOM05D002981 ORTHO05D003725 6.1e-16 88.2 88 60.2
CAN.G1273.1 Capsicum annuum HOM05D002981 ORTHO05D003725 8.0e-16 87.8 88 56.8
Cc02_g34820 Coffea canephora HOM05D002981 ORTHO05D003725 8.0e-16 87.8 88 59.1
SalBow3G0105 Salvia bowleyana HOM05D002981 ORTHO05D003725 8.0e-16 87.8 88 59.1
arahy.Tifrunner.gnm1.ann1.FDR7V2 Arachis hypogaea HOM05D002981 ORTHO05D003725 1.0e-15 87.4 88 59.1
Lsat_1_v5_gn_5_102801 Lactuca sativa HOM05D002981 ORTHO05D003725 1.0e-15 87.4 88 60.2
Nitab4.5_0009033g0020 Nicotiana tabacum HOM05D002981 ORTHO05D003725 1.0e-15 87.4 88 59.1
THA.LOC104802194 Tarenaya hassleriana HOM05D002981 ORTHO05D003725 1.0e-15 87.4 88 58.0
unitig_21.g20026 Utricularia gibba HOM05D002981 ORTHO05D003725 1.4e-15 87.0 88 55.7
CSS0025736 Camellia sinensis var. sinensis HOM05D002981 ORTHO05D003725 1.8e-15 86.7 88 59.1
AUR62000684 Chenopodium quinoa HOM05D002981 ORTHO05D003725 1.8e-15 86.7 88 58.0
AUR62005272 Chenopodium quinoa HOM05D002981 ORTHO05D003725 1.8e-15 86.7 88 58.0
ClCG09G005250 Citrullus lanatus HOM05D002981 ORTHO05D003725 1.8e-15 86.7 88 58.0
Duzib133G0744 Durio zibethinus HOM05D002981 ORTHO05D003725 1.8e-15 86.7 88 60.2
Atru.chr5.1047 Acer truncatum HOM05D002981 ORTHO05D003725 2.3e-15 86.3 88 59.1
COL.COLO4_23259 Corchorus olitorius HOM05D002981 ORTHO05D003725 2.3e-15 86.3 88 59.1
Duzib211G0560 Durio zibethinus HOM05D002981 ORTHO05D003725 2.3e-15 86.3 88 59.1
Nitab4.5_0000368g0270 Nicotiana tabacum HOM05D002981 ORTHO05D003725 2.3e-15 86.3 88 58.0
SGA_v2.0_scaffold80G25880 Striga asiatica HOM05D002981 ORTHO05D003725 2.3e-15 86.3 88 53.4
ATR0706G068 Amborella trichopoda HOM05D002981 ORTHO05D003725 3.0e-15 85.9 88 56.8
arahy.Tifrunner.gnm1.ann1.VAQ4DL Arachis hypogaea HOM05D002981 ORTHO05D003725 3.0e-15 85.9 88 58.0
CANSAT54G0071 Cannabis sativa HOM05D002981 ORTHO05D003725 3.0e-15 85.9 88 59.1
Eucgr.K03531 Eucalyptus grandis HOM05D002981 ORTHO05D003725 3.9e-15 85.5 88 56.8
Gorai.008G141100 Gossypium raimondii HOM05D002981 ORTHO05D003725 3.9e-15 85.5 88 59.1
Rhsim05G0133600 Rhododendron simsii HOM05D002981 ORTHO05D003725 3.9e-15 85.5 88 58.0
Solyc01g100320.3 Solanum lycopersicum HOM05D002981 ORTHO05D003725 3.9e-15 85.5 87 59.8
Sopen01g043830 Solanum pennellii HOM05D002981 ORTHO05D003725 3.9e-15 85.5 87 59.8
vmacro01554 Vaccinium macrocarpon HOM05D002981 ORTHO05D003725 3.9e-15 85.5 88 56.8
vmacro19723 Vaccinium macrocarpon HOM05D002981 ORTHO05D003725 3.9e-15 85.5 88 58.0
MELO3C015939.2 Cucumis melo HOM05D002981 ORTHO05D003725 5.2e-15 85.1 88 58.0
Gohir.A08G118600 Gossypium hirsutum HOM05D002981 ORTHO05D003725 5.2e-15 85.1 88 58.0
Gohir.D08G139400 Gossypium hirsutum HOM05D002981 ORTHO05D003725 5.2e-15 85.1 88 58.0
Gorai.004G143300 Gossypium raimondii HOM05D002981 ORTHO05D003725 5.2e-15 85.1 88 58.0
Oeu064809.1 Olea europaea HOM05D002981 ORTHO05D003725 5.2e-15 85.1 88 56.8
PGSC0003DMG400002779 Solanum tuberosum HOM05D002981 ORTHO05D003725 5.2e-15 85.1 87 59.8
EL10Ac4g09830 Beta vulgaris HOM05D002981 ORTHO05D003725 6.7e-15 84.7 88 55.7
HanXRQChr10g0299231 Helianthus annuus HOM05D002981 ORTHO05D003725 6.7e-15 84.7 88 58.0
PGR044G1530 Punica granatum HOM05D002981 ORTHO05D003725 6.7e-15 84.7 88 56.8
TWI75G0141 Tripterygium wilfordii HOM05D002981 ORTHO05D003725 6.7e-15 84.7 88 54.5
TAR365G0113 Trochodendron aralioides HOM05D002981 ORTHO05D003725 6.7e-15 84.7 89 53.9
BcaB01g03165 Brassica carinata HOM05D002981 ORTHO05D003725 8.8e-15 84.3 88 58.0
DCAR_029360 Daucus carota HOM05D002981 ORTHO05D003725 8.8e-15 84.3 88 58.0
Gohir.A12G126400 Gossypium hirsutum HOM05D002981 ORTHO05D003725 8.8e-15 84.3 88 58.0
MSTRG.27951 Avicennia marina HOM05D002981 ORTHO05D003725 1.1e-14 84.0 88 55.7
MSTRG.5139 Avicennia marina HOM05D002981 ORTHO05D003725 1.1e-14 84.0 88 53.4
BcaC01g05028 Brassica carinata HOM05D002981 ORTHO05D003725 1.1e-14 84.0 88 56.8
A03p25980 Brassica napus HOM05D002981 ORTHO05D003725 1.1e-14 84.0 88 56.8
C03p30980 Brassica napus HOM05D002981 ORTHO05D003725 1.1e-14 84.0 88 56.8
BolC3t15449H Brassica oleracea HOM05D002981 ORTHO05D003725 1.1e-14 84.0 88 56.8
Ciclev10020618m.g Citrus clementina HOM05D002981 ORTHO05D003725 1.1e-14 84.0 88 56.8
CsaV3_7G029820 Cucumis sativus L. HOM05D002981 ORTHO05D003725 1.1e-14 84.0 88 56.8
Gorai.007G124200 Gossypium raimondii HOM05D002981 ORTHO05D003725 1.1e-14 84.0 88 56.8
Peaxi162Scf00673g00127 Petunia axillaris HOM05D002981 ORTHO05D003725 1.1e-14 84.0 87 58.6
Prupe.6G315000 Prunus persica HOM05D002981 ORTHO05D003725 1.1e-14 84.0 88 55.7
QL03p018289 Quercus lobata HOM05D002981 ORTHO05D003725 1.1e-14 84.0 88 55.7
Sc09g0002680 Simmondsia chinensis HOM05D002981 ORTHO05D003725 1.1e-14 84.0 88 54.5
TAR633G1423 Trochodendron aralioides HOM05D002981 ORTHO05D003725 1.1e-14 84.0 88 56.8
VMungo0720G0399 Vigna mungo HOM05D002981 ORTHO05D003725 1.1e-14 84.0 88 56.8
CDE02G3360 Ceratophyllum demersum HOM05D002981 ORTHO05D003725 1.5e-14 83.6 88 55.7
Glyma.02G014000 Glycine max HOM05D002981 ORTHO05D003725 1.5e-14 83.6 88 55.7
Glyma.10G014700 Glycine max HOM05D002981 ORTHO05D003725 1.5e-14 83.6 88 55.7
SGA_v2.0_scaffold81G26125 Striga asiatica HOM05D002981 ORTHO05D003725 1.5e-14 83.6 88 52.3
Thecc.01G310600 Theobroma cacao HOM05D002981 ORTHO05D003725 1.5e-14 83.6 88 55.7
CDE09G1190 Ceratophyllum demersum HOM05D002981 ORTHO05D003725 2.0e-14 83.2 88 55.7
Duzib138G0226 Durio zibethinus HOM05D002981 ORTHO05D003725 2.0e-14 83.2 88 56.8
Gohir.D12G129900 Gossypium hirsutum HOM05D002981 ORTHO05D003725 2.0e-14 83.2 87 58.6
Lj9C217G8 Lonicera japonica HOM05D002981 ORTHO05D003725 2.0e-14 83.2 88 55.7
Nn3g21634 Nelumbo nucifera HOM05D002981 ORTHO05D003725 2.0e-14 83.2 88 55.7
Nn4g25650 Nelumbo nucifera HOM05D002981 ORTHO05D003725 2.0e-14 83.2 88 55.7
Os01g0339900 Oryza sativa ssp. japonica HOM05D002981 ORTHO05D003725 2.0e-14 83.2 88 56.8
TWI56G0814 Tripterygium wilfordii HOM05D002981 ORTHO05D003725 2.0e-14 83.2 88 56.8
AL4G47030 Arabidopsis lyrata HOM05D002981 ORTHO05D003725 2.6e-14 82.8 88 56.8
AT2G47470 Arabidopsis thaliana HOM05D002981 ORTHO05D003725 2.6e-14 82.8 88 56.8
Rhsim11G0094000 Rhododendron simsii HOM05D002981 ORTHO05D003725 2.6e-14 82.8 88 55.7
Sp4g29410 Schrenkiella parvula HOM05D002981 ORTHO05D003725 2.6e-14 82.8 88 56.8
Aqoxy2G02802 Aquilegia oxysepala HOM05D002981 ORTHO05D003725 3.3e-14 82.4 88 56.8
BcaB02g08769 Brassica carinata HOM05D002981 ORTHO05D003725 3.3e-14 82.4 88 56.8
BolC4t21686H Brassica oleracea HOM05D002981 ORTHO05D003725 3.3e-14 82.4 88 56.8
BraA03t11815Z Brassica rapa HOM05D002981 ORTHO05D003725 3.3e-14 82.4 88 55.7
Gohir.A07G127500 Gossypium hirsutum HOM05D002981 ORTHO05D003725 3.3e-14 82.4 107 49.5
Lj5g0008352 Lotus japonicus HOM05D002981 ORTHO05D003725 3.3e-14 82.4 88 56.8
MD04G1195300 Malus domestica HOM05D002981 ORTHO05D003725 3.3e-14 82.4 88 55.7
Os05g0156300 Oryza sativa ssp. japonica HOM05D002981 ORTHO05D003725 3.3e-14 82.4 87 57.5
Phvul.007G215900 Phaseolus vulgaris HOM05D002981 ORTHO05D003725 3.3e-14 82.4 87 56.3
Potri.002G198300 Populus trichocarpa HOM05D002981 ORTHO05D003725 3.3e-14 82.4 88 55.7
Sabra02G0159300 Salix brachista HOM05D002981 ORTHO05D003725 3.3e-14 82.4 88 55.7
Hund21746 Selenicereus undatus HOM05D002981 ORTHO05D003725 3.3e-14 82.4 87 55.2
Sc16g0008930 Simmondsia chinensis HOM05D002981 ORTHO05D003725 3.3e-14 82.4 87 55.2
Ca_10298_v3 Cicer arietinum L. HOM05D002981 ORTHO05D003725 4.4e-14 82.0 88 55.7
Dinv30871 Davidia involucrata HOM05D002981 ORTHO05D003725 4.4e-14 82.0 88 55.7
Manes.05G002000 Manihot esculenta HOM05D002981 ORTHO05D003725 4.4e-14 82.0 88 55.7
Manes.09G175600 Manihot esculenta HOM05D002981 ORTHO05D003725 4.4e-14 82.0 88 53.4
TWI18G0728 Tripterygium wilfordii HOM05D002981 ORTHO05D003725 4.4e-14 82.0 88 53.4
TAR362G0641 Trochodendron aralioides HOM05D002981 ORTHO05D003725 4.4e-14 82.0 88 55.7
Zm00001eb282710 Zea mays HOM05D002981 ORTHO05D003725 4.4e-14 82.0 87 57.5
Oeu053701.1 Olea europaea HOM05D002981 ORTHO05D003725 5.7e-14 81.6 87 56.3
Sed0000157 Sechium edule HOM05D002981 ORTHO05D003725 5.7e-14 81.6 88 55.7
Carub.0004s3019 Capsella rubella HOM05D002981 ORTHO05D003725 7.4e-14 81.3 88 55.7
CiPaw.08G156600 Carya illinoinensis HOM05D002981 ORTHO05D003725 7.4e-14 81.3 88 55.7
ECA234G2827 Erigeron canadensis HOM05D002981 ORTHO05D003725 7.4e-14 81.3 88 55.7
Thhalv10001515m.g Eutrema salsugineum HOM05D002981 ORTHO05D003725 7.4e-14 81.3 88 55.7
FAN09G2340 Fragaria x ananassa HOM05D002981 ORTHO05D003725 7.4e-14 81.3 87 56.3
Zm00001eb131360 Zea mays HOM05D002981 ORTHO05D003725 7.4e-14 81.3 88 54.5
Haze_05013 Corylus avellana HOM05D002981 ORTHO05D003725 9.7e-14 80.9 88 53.4
FvH4_6g07230 Fragaria vesca HOM05D002981 ORTHO05D003725 9.7e-14 80.9 87 56.3
FAN02G4218 Fragaria x ananassa HOM05D002981 ORTHO05D003725 9.7e-14 80.9 87 56.3
FAN05G2722 Fragaria x ananassa HOM05D002981 ORTHO05D003725 9.7e-14 80.9 87 56.3
FAN14G0083 Fragaria x ananassa HOM05D002981 ORTHO05D003725 9.7e-14 80.9 87 56.3
Hma1.2p1_0008F-1.1_g005760 Hydrangea macrophylla HOM05D002981 ORTHO05D003725 9.7e-14 80.9 87 55.2
RcHm_v2.0_Chr3g0456861 Rosa chinensis HOM05D002981 ORTHO05D003725 9.7e-14 80.9 87 56.3
SEGI_15151 Sequoiadendron giganteum HOM05D002981 ORTHO05D003725 9.7e-14 80.9 107 47.7
C04p00410 Brassica napus HOM05D002981 ORTHO05D003725 1.3e-13 80.5 88 55.7
Gorai.001G143100 Gossypium raimondii HOM05D002981 ORTHO05D003725 1.3e-13 80.5 107 48.6
Lj5A337G17 Lonicera japonica HOM05D002981 ORTHO05D003725 1.3e-13 80.5 86 52.3
Lalb_Chr21g0309481 Lupinus albus HOM05D002981 ORTHO05D003725 1.3e-13 80.5 88 54.5
MD12G1207400 Malus domestica HOM05D002981 ORTHO05D003725 1.3e-13 80.5 88 54.5
A05p00460 Brassica napus HOM05D002981 ORTHO05D003725 1.7e-13 80.1 88 55.7
BraA05t19044Z Brassica rapa HOM05D002981 ORTHO05D003725 1.7e-13 80.1 88 55.7
Dinv24424 Davidia involucrata HOM05D002981 ORTHO05D003725 1.7e-13 80.1 88 53.4
Hund07135 Selenicereus undatus HOM05D002981 ORTHO05D003725 1.7e-13 80.1 88 53.4
unitig_26.g10138 Utricularia gibba HOM05D002981 ORTHO05D003725 1.7e-13 80.1 87 55.2
QL12p028974 Quercus lobata HOM05D002981 ORTHO05D003725 2.2e-13 79.7 88 53.4
TPR.G1663 Trifolium pratense HOM05D002981 ORTHO05D003725 2.2e-13 79.7 88 50.0
CiPaw.07G115400 Carya illinoinensis HOM05D002981 ORTHO05D003725 2.8e-13 79.3 88 52.3
Migut.N02114 Erythranthe guttata HOM05D002981 ORTHO05D003725 2.8e-13 79.3 87 55.2
Medtr1g087520 Medicago truncatula HOM05D002981 ORTHO05D003725 2.8e-13 79.3 88 54.5
Sed0023511 Sechium edule HOM05D002981 ORTHO05D003725 2.8e-13 79.3 87 50.6
TPR.G19768 Trifolium pratense HOM05D002981 ORTHO05D003725 2.8e-13 79.3 88 51.1
Lalb_Chr02g0146691 Lupinus albus HOM05D002981 ORTHO05D003725 3.7e-13 79.0 88 52.3
HPP92_016960 Vanilla planifolia HOM05D002981 ORTHO05D003725 3.7e-13 79.0 88 53.4
PSO210G1046 Papaver somniferum HOM05D002981 ORTHO05D003725 4.8e-13 78.6 87 51.7
PSO761G0326 Papaver somniferum HOM05D002981 ORTHO05D003725 4.8e-13 78.6 87 51.7
Potri.014G122800 Populus trichocarpa HOM05D002981 ORTHO05D003725 4.8e-13 78.6 88 52.3
ECA236G5052 Erigeron canadensis HOM05D002981 ORTHO05D003725 6.3e-13 78.2 88 48.9
Glyma.19G229000 Glycine max HOM05D002981 ORTHO05D003725 8.2e-13 77.8 87 55.2
DCAR_005415 Daucus carota HOM05D002981 ORTHO05D003725 1.1e-12 77.4 86 54.7
Peaxi162Scf00071g00438 Petunia axillaris HOM05D002981 ORTHO05D003725 1.1e-12 77.4 86 54.7
SHI12762 Sapria himalayana HOM05D002981 ORTHO05D003725 1.1e-12 77.4 88 50.0
VMungo1383G3526 Vigna mungo HOM05D002981 ORTHO05D003725 1.1e-12 77.4 87 54.0
Gohir.D11G116000 Gossypium hirsutum HOM05D002981 ORTHO05D003725 1.4e-12 77.0 88 54.5
CSS0028783 Camellia sinensis var. sinensis HOM05D002981 ORTHO05D003725 2.4e-12 76.3 88 48.9
Ca_09297_v3 Cicer arietinum L. HOM05D002981 ORTHO05D003725 2.4e-12 76.3 88 52.3
Sabra14G0091200 Salix brachista HOM05D002981 ORTHO05D003725 2.4e-12 76.3 88 51.1
Glyma.03G232000 Glycine max HOM05D002981 ORTHO05D003725 3.1e-12 75.9 87 52.9
arahy.Tifrunner.gnm1.ann1.PTRY8R Arachis hypogaea HOM05D002981 ORTHO05D003725 4.1e-12 75.5 108 41.7
DCAR_025272 Daucus carota HOM05D002981 ORTHO05D003725 4.1e-12 75.5 88 52.3
Psat6g163280 Pisum sativum HOM05D002981 ORTHO05D003725 4.1e-12 75.5 87 51.7
Aa31LG1G28770 Aethionema arabicum HOM05D002981 ORTHO05D003725 5.3e-12 75.1 87 52.9
Lj1g0022270 Lotus japonicus HOM05D002981 ORTHO05D003725 7.0e-12 74.7 88 50.0
Lsat_1_v5_gn_7_73501 Lactuca sativa HOM05D002981 ORTHO05D003725 9.1e-12 74.3 87 50.6
Phvul.001G225600 Phaseolus vulgaris HOM05D002981 ORTHO05D003725 9.1e-12 74.3 87 51.7
Mapoly0016s0144 Marchantia polymorpha HOM05D002981 ORTHO05D003725 2.6e-11 72.8 87 44.8
AagrBONN_evm.TU.Sc2ySwM_228.808 Anthoceros agrestis HOM05D002981 ORTHO05D003725 3.5e-11 72.4 87 48.3
Medtr7g112040 Medicago truncatula HOM05D002981 ORTHO05D003725 3.5e-11 72.4 88 48.9
Psat3g013080 Pisum sativum HOM05D002981 ORTHO05D003725 1.3e-10 70.5 85 48.2
Haze_04080 Corylus avellana HOM05D002981 ORTHO05D003725 8.5e-10 67.8 88 44.3
Cpa.g.sc18.9 Carica papaya HOM05D002981 ORTHO05D003725 2.5e-09 66.2 75 53.3
SMO201G0065 Selaginella moellendorffii HOM05D002981 ORTHO05D003725 7.2e-09 64.7 115 40.0
SMO306G0009 Selaginella moellendorffii HOM05D002981 ORTHO05D003725 3.6e-08 62.4 88 39.8
Pp3c4_19910 Physcomitrium patens HOM05D002981 ORTHO05D003725 4.7e-08 62.0 87 43.7
HPP92_015959 Vanilla planifolia HOM05D002981 ORTHO05D003725 4.7e-08 62.0 89 40.4
CBR_g41277 Chara braunii HOM05D002981 ORTHO05D003725 1.4e-07 60.5 87 42.5
Lalb_Chr06g0166781 Lupinus albus HOM05D002981 ORTHO05D003725 1.4e-07 60.5 84 42.9
CBR_g41286 Chara braunii HOM05D002981 ORTHO05D003725 1.8e-07 60.1 87 41.4
CBR_g35008 Chara braunii HOM05D002981 ORTHO05D003725 1.2e-06 57.4 87 37.9
Oeu013220.1 Olea europaea HOM05D002981 ORTHO05D003725 2.0e-06 56.6 35 77.1
arahy.Tifrunner.gnm1.ann1.LY6DXQ Arachis hypogaea HOM05D002981 ORTHO05D003725 7.5e-06 54.7 108 37.0
arahy.Tifrunner.gnm1.ann1.B5R1P0 Arachis hypogaea HOM05D002981 ORTHO05D031299 9.7e-06 54.3 39 66.7


User provided reference genes

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