Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g18830 Coffea canephora HOM05D001373 ORTHO05D034821 4.6e-52 207.6 105 100.0
Cc02_g09870 Coffea canephora HOM05D001373 ORTHO05D001330 4.8e-33 144.4 74 98.6
Cc02_g09850 Coffea canephora HOM05D001373 ORTHO05D001330 1.2e-23 113.2 74 75.7
Cc00_g18820 Coffea canephora HOM05D001373 ORTHO05D001330 5.0e-22 107.8 74 77.0
Cc00_g18840 Coffea canephora HOM05D001373 ORTHO05D001330 1.5e-21 106.3 73 75.3
Eucgr.G02698 Eucalyptus grandis HOM05D001373 ORTHO05D001330 1.8e-16 89.4 73 63.0
PGR142G2723 Punica granatum HOM05D001373 ORTHO05D001330 3.1e-16 88.6 73 60.3
Lsat_1_v5_gn_0_7541 Lactuca sativa HOM05D001373 ORTHO05D001330 1.2e-15 86.7 74 64.9
Oeu061779.1 Olea europaea HOM05D001373 ORTHO05D001330 1.2e-15 86.7 75 65.3
arahy.Tifrunner.gnm1.ann1.MWJV02 Arachis hypogaea HOM05D001373 ORTHO05D001330 1.6e-15 86.3 65 64.6
Rhsim09G0143000 Rhododendron simsii HOM05D001373 ORTHO05D001330 2.7e-15 85.5 73 60.3
arahy.Tifrunner.gnm1.ann1.DMB65R Arachis hypogaea HOM05D001373 ORTHO05D001330 3.5e-15 85.1 65 63.1
CiPaw.14G032600 Carya illinoinensis HOM05D001373 ORTHO05D001330 3.5e-15 85.1 72 55.6
Dinv09593 Davidia involucrata HOM05D001373 ORTHO05D001330 4.5e-15 84.7 75 58.7
ECA232G4280 Erigeron canadensis HOM05D001373 ORTHO05D001330 4.5e-15 84.7 74 63.5
Hma1.2p1_0356F.1_g133990 Hydrangea macrophylla HOM05D001373 ORTHO05D001330 7.7e-15 84.0 74 58.1
Peaxi162Scf00173g00824 Petunia axillaris HOM05D001373 ORTHO05D001330 7.7e-15 84.0 75 58.7
PGR044G1873 Punica granatum HOM05D001373 ORTHO05D001330 1.3e-14 83.2 74 58.1
QL04p044744 Quercus lobata HOM05D001373 ORTHO05D001330 1.3e-14 83.2 73 54.8
HanXRQChr05g0146901 Helianthus annuus HOM05D001373 ORTHO05D001330 1.7e-14 82.8 74 62.2
Glyma.10G203700 Glycine max HOM05D001373 ORTHO05D001330 2.2e-14 82.4 72 54.2
TPR.G18692 Trifolium pratense HOM05D001373 ORTHO05D001330 2.2e-14 82.4 75 61.3
Lalb_Chr06g0170201 Lupinus albus HOM05D001373 ORTHO05D001330 2.9e-14 82.0 71 57.7
FvH4_7g05740 Fragaria vesca HOM05D001373 ORTHO05D001330 3.8e-14 81.6 73 54.8
FAN01G2854 Fragaria x ananassa HOM05D001373 ORTHO05D001330 3.8e-14 81.6 73 54.8
FAN10G3078 Fragaria x ananassa HOM05D001373 ORTHO05D001330 3.8e-14 81.6 73 54.8
QL04p044773 Quercus lobata HOM05D001373 ORTHO05D001330 3.8e-14 81.6 74 59.5
PGSC0003DMG400019465 Solanum tuberosum HOM05D001373 ORTHO05D001330 3.8e-14 81.6 75 53.3
Medtr1g092880 Medicago truncatula HOM05D001373 ORTHO05D001330 6.5e-14 80.9 73 60.3
Sopen11g003050 Solanum pennellii HOM05D001373 ORTHO05D001330 6.5e-14 80.9 75 53.3
Zm00001eb196970 Zea mays HOM05D001373 ORTHO05D001330 6.5e-14 80.9 83 50.6
FAN06G0236 Fragaria x ananassa HOM05D001373 ORTHO05D001330 8.5e-14 80.5 73 53.4
Lj3A929G30 Lonicera japonica HOM05D001373 ORTHO05D001330 1.1e-13 80.1 76 59.2
Solyc11g007130.2 Solanum lycopersicum HOM05D001373 ORTHO05D001330 1.1e-13 80.1 75 53.3
VMungo0720G0665 Vigna mungo HOM05D001373 ORTHO05D001330 1.1e-13 80.1 72 55.6
Aqoxy4G02811 Aquilegia oxysepala HOM05D001373 ORTHO05D001330 1.5e-13 79.7 75 54.7
Phvul.007G103300 Phaseolus vulgaris HOM05D001373 ORTHO05D001330 1.5e-13 79.7 72 56.9
Psat6g177600 Pisum sativum HOM05D001373 ORTHO05D001330 1.5e-13 79.7 72 58.3
CAN.G730.35 Capsicum annuum HOM05D001373 ORTHO05D001330 1.9e-13 79.3 75 52.0
RcHm_v2.0_Chr1g0332771 Rosa chinensis HOM05D001373 ORTHO05D001330 2.5e-13 79.0 73 53.4
Nitab4.5_0003774g0040 Nicotiana tabacum HOM05D001373 ORTHO05D001330 3.2e-13 78.6 75 53.3
Peaxi162Scf00173g00074 Petunia axillaris HOM05D001373 ORTHO05D001330 3.2e-13 78.6 75 56.0
CDE08G1249 Ceratophyllum demersum HOM05D001373 ORTHO05D001330 4.2e-13 78.2 74 55.4
Medtr1g092870 Medicago truncatula HOM05D001373 ORTHO05D001330 4.2e-13 78.2 71 53.5
Nitab4.5_0001437g0220 Nicotiana tabacum HOM05D001373 ORTHO05D001330 4.2e-13 78.2 75 53.3
Actinidia34717 Actinidia chinensis HOM05D001373 ORTHO05D001330 5.5e-13 77.8 75 56.0
CSS0015733 Camellia sinensis var. sinensis HOM05D001373 ORTHO05D001330 5.5e-13 77.8 74 59.5
Eucgr.J00997 Eucalyptus grandis HOM05D001373 ORTHO05D001330 7.2e-13 77.4 74 58.1
Migut.F00904 Erythranthe guttata HOM05D001373 ORTHO05D001330 1.6e-12 76.3 74 55.4
PSO339G2300 Papaver somniferum HOM05D001373 ORTHO05D001330 1.6e-12 76.3 75 54.7
PSO384G1565 Papaver somniferum HOM05D001373 ORTHO05D001330 1.6e-12 76.3 75 54.7
QL04p044735 Quercus lobata HOM05D001373 ORTHO05D001330 1.6e-12 76.3 73 50.7
Sabra10G0185800 Salix brachista HOM05D001373 ORTHO05D005988 1.6e-12 76.3 72 56.9
GSVIVG01011268001 Vitis vinifera HOM05D001373 ORTHO05D001330 1.6e-12 76.3 75 54.7
Eucgr.J00999 Eucalyptus grandis HOM05D001373 ORTHO05D001330 2.1e-12 75.9 74 56.8
Potri.008G022100 Populus trichocarpa HOM05D001373 ORTHO05D001330 2.1e-12 75.9 72 55.6
Haze_02525 Corylus avellana HOM05D001373 ORTHO05D001330 2.7e-12 75.5 74 54.1
Thecc.10G107800 Theobroma cacao HOM05D001373 ORTHO05D001330 2.7e-12 75.5 66 59.1
Atru.chr12.1002 Acer truncatum HOM05D001373 ORTHO05D001330 3.6e-12 75.1 73 54.8
Cpa.g.sc183.3 Carica papaya HOM05D001373 ORTHO05D001330 3.6e-12 75.1 74 50.0
FAN03G2160 Fragaria x ananassa HOM05D001373 ORTHO05D001330 3.6e-12 75.1 73 52.1
Potri.010G237300 Populus trichocarpa HOM05D001373 ORTHO05D001330 3.6e-12 75.1 72 55.6
Sabra08G0015000 Salix brachista HOM05D001373 ORTHO05D001330 3.6e-12 75.1 72 55.6
SalBow6G4659 Salvia bowleyana HOM05D001373 ORTHO05D001330 3.6e-12 75.1 77 51.9
CDE06G1486 Ceratophyllum demersum HOM05D001373 ORTHO05D001330 8.0e-12 73.9 74 52.7
unitig_899.g14475 Utricularia gibba HOM05D001373 ORTHO05D001330 8.0e-12 73.9 74 51.4
COL.COLO4_37500 Corchorus olitorius HOM05D001373 ORTHO05D001330 1.0e-11 73.6 73 54.8
Nn6g34953 Nelumbo nucifera HOM05D001373 ORTHO05D001330 1.0e-11 73.6 77 50.6
Ah.02g127310 Amaranthus hybridus HOM05D001373 ORTHO05D001330 2.3e-11 72.4 75 52.0
Manes.10G058000 Manihot esculenta HOM05D001373 ORTHO05D001330 2.3e-11 72.4 73 52.1
EL10Ac6g13655 Beta vulgaris HOM05D001373 ORTHO05D001330 3.0e-11 72.0 60 58.3
EL10Ac6g14545 Beta vulgaris HOM05D001373 ORTHO05D001330 3.0e-11 72.0 75 52.0
CANSAT56G3177 Cannabis sativa HOM05D001373 ORTHO05D001330 3.0e-11 72.0 74 51.4
Os11g0151500 Oryza sativa ssp. japonica HOM05D001373 ORTHO05D001330 3.0e-11 72.0 81 46.9
Hund06776 Selenicereus undatus HOM05D001373 ORTHO05D001330 3.0e-11 72.0 77 48.1
CiPaw.13G038300 Carya illinoinensis HOM05D001373 ORTHO05D001330 4.0e-11 71.6 73 54.8
Atru.chr12.1004 Acer truncatum HOM05D001373 ORTHO05D001330 5.2e-11 71.2 73 52.1
TWI63G1122 Tripterygium wilfordii HOM05D001373 ORTHO05D001330 6.8e-11 70.9 67 59.7
Sopen11g003060 Solanum pennellii HOM05D001373 ORTHO05D001330 1.2e-10 70.1 73 49.3
Prupe.2G079900 Prunus persica HOM05D001373 ORTHO05D001330 1.5e-10 69.7 73 49.3
AUR62007760 Chenopodium quinoa HOM05D001373 ORTHO05D001330 2.0e-10 69.3 75 49.3
AUR62005359 Chenopodium quinoa HOM05D001373 ORTHO05D001330 5.7e-10 67.8 60 55.0
Ciclev10031562m.g Citrus clementina HOM05D001373 ORTHO05D001330 1.3e-09 66.6 73 47.9
Ah.02g129860 Amaranthus hybridus HOM05D001373 ORTHO05D001330 1.7e-09 66.2 60 55.0
EL10Ac6g14542 Beta vulgaris HOM05D001373 ORTHO05D001330 1.7e-09 66.2 49 67.3
Sed0004312 Sechium edule HOM05D001373 ORTHO05D001330 1.7e-09 66.2 73 49.3
SEGI_32913 Sequoiadendron giganteum HOM05D001373 ORTHO05D001330 1.7e-09 66.2 53 58.5
Lj5g0003680 Lotus japonicus HOM05D001373 ORTHO05D001330 2.2e-09 65.9 57 56.1
AUR62002955 Chenopodium quinoa HOM05D001373 ORTHO05D001330 2.8e-09 65.5 74 48.6
Zm00001eb097590 Zea mays HOM05D001373 ORTHO05D034821 3.7e-09 65.1 67 49.3
Sc04g0009080 Simmondsia chinensis HOM05D001373 ORTHO05D001330 6.3e-09 64.3 59 54.2
Zm00001eb370970 Zea mays HOM05D001373 ORTHO05D034821 6.3e-09 64.3 67 47.8
AUR62014014 Chenopodium quinoa HOM05D001373 ORTHO05D001330 1.1e-08 63.5 60 53.3
CsaV3_6G004160 Cucumis sativus L. HOM05D001373 ORTHO05D001330 1.4e-08 63.2 73 47.9
SEGI_09989 Sequoiadendron giganteum HOM05D001373 ORTHO05D001330 2.4e-08 62.4 56 48.2
ATR0820G229 Amborella trichopoda HOM05D001373 ORTHO05D001330 3.1e-08 62.0 44 68.2
EL10Ac6g14544 Beta vulgaris HOM05D001373 ORTHO05D001330 4.1e-08 61.6 44 61.4
Oeu026574.1 Olea europaea HOM05D001373 ORTHO05D001330 5.4e-08 61.2 41 73.2
SGA_v2.0_scaffold13G06487 Striga asiatica HOM05D001373 ORTHO05D001330 4.5e-07 58.2 45 62.2
DCAR_006344 Daucus carota HOM05D001373 ORTHO05D001330 5.9e-07 57.8 50 62.0
SMO351G0466 Selaginella moellendorffii HOM05D001373 ORTHO05D001330 5.9e-07 57.8 53 52.8
CAN.G311.77 Capsicum annuum HOM05D001373 ORTHO05D001330 7.7e-07 57.4 68 44.1
Actinidia37956 Actinidia chinensis HOM05D001373 ORTHO05D001330 1.0e-06 57.0 66 47.0
PGSC0003DMG400019466 Solanum tuberosum HOM05D001373 ORTHO05D001330 1.3e-06 56.6 40 60.0
SGA_v2.0_scaffold68G22837 Striga asiatica HOM05D001373 ORTHO05D001330 1.3e-06 56.6 41 65.9
Peaxi162Scf00173g00820 Petunia axillaris HOM05D001373 ORTHO05D001330 2.9e-06 55.5 40 55.0
Hund05982 Selenicereus undatus HOM05D001373 ORTHO05D001330 3.8e-06 55.1 57 49.1
MSTRG.1144 Avicennia marina HOM05D001373 ORTHO05D001330 6.6e-06 54.3 54 50.0
DCAR_013896 Daucus carota HOM05D001373 ORTHO05D001330 6.6e-06 54.3 50 54.0
Nn6g31903 Nelumbo nucifera HOM05D001373 ORTHO05D001330 6.6e-06 54.3 57 47.4
QL08p060750 Quercus lobata HOM05D001373 ORTHO05D001330 6.6e-06 54.3 41 56.1
Glyma.06G020600 Glycine max HOM05D001373 ORTHO05D001330 8.6e-06 53.9 50 56.0
Hma1.2p1_0016F.1_g010900 Hydrangea macrophylla HOM05D001373 ORTHO05D001330 8.6e-06 53.9 62 43.5
HPP92_022254 Vanilla planifolia HOM05D001373 ORTHO05D001330 8.6e-06 53.9 50 52.0
HPP92_022257 Vanilla planifolia HOM05D001373 ORTHO05D001330 8.6e-06 53.9 50 52.0


User provided reference genes

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