Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g18660 Coffea canephora HOM05D005155 ORTHO05D006266 1.5e-65 252.7 128 100.0
Cc00_g14350 Coffea canephora HOM05D005155 ORTHO05D006266 4.6e-54 214.5 117 94.9
Cc02_g33980 Coffea canephora HOM05D005155 ORTHO05D006266 1.5e-52 209.5 116 94.8
Cc07_g20190 Coffea canephora HOM05D005155 ORTHO05D006266 6.9e-50 200.7 117 89.7
Nitab4.5_0004941g0060 Nicotiana tabacum HOM05D005155 ORTHO05D006266 1.6e-46 189.5 113 86.7
Nitab4.5_0003086g0050 Nicotiana tabacum HOM05D005155 ORTHO05D006266 1.8e-45 186.0 113 85.8
Dinv05324 Davidia involucrata HOM05D005155 ORTHO05D006266 5.7e-44 181.0 112 83.9
Dinv21322 Davidia involucrata HOM05D005155 ORTHO05D006266 7.4e-44 180.6 112 83.0
Hma1.2p1_0629F.1_g192150 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 7.4e-44 180.6 112 82.1
MSTRG.6620 Avicennia marina HOM05D005155 ORTHO05D006266 1.6e-43 179.5 118 78.8
CSS0035525 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 2.8e-43 178.7 112 83.0
Solyc05g005730.4 Solanum lycopersicum HOM05D005155 ORTHO05D006266 2.4e-42 175.6 113 79.6
Sopen05g001730 Solanum pennellii HOM05D005155 ORTHO05D006266 2.4e-42 175.6 113 79.6
CAN.G1447.4 Capsicum annuum HOM05D005155 ORTHO05D006266 3.1e-42 175.3 113 80.5
PGSC0003DMG400004112 Solanum tuberosum HOM05D005155 ORTHO05D006266 4.1e-42 174.9 113 78.8
Actinidia20603 Actinidia chinensis HOM05D005155 ORTHO05D006266 1.5e-41 172.9 112 80.4
Cfa014201 Carpinus fangiana HOM05D005155 ORTHO05D006266 1.5e-41 172.9 112 79.5
Ciclev10015959m.g Citrus clementina HOM05D005155 ORTHO05D006266 1.5e-41 172.9 112 78.6
Actinidia24711 Actinidia chinensis HOM05D005155 ORTHO05D006266 2.0e-41 172.6 112 79.5
Thecc.01G199500 Theobroma cacao HOM05D005155 ORTHO05D006266 2.6e-41 172.2 113 78.8
Potri.014G170500 Populus trichocarpa HOM05D005155 ORTHO05D006266 3.4e-41 171.8 112 78.6
Haze_24928 Corylus avellana HOM05D005155 ORTHO05D006266 4.5e-41 171.4 114 78.1
Rhsim04G0007200 Rhododendron simsii HOM05D005155 ORTHO05D006266 4.5e-41 171.4 112 80.4
Gohir.D11G154600 Gossypium hirsutum HOM05D005155 ORTHO05D006266 5.9e-41 171.0 113 78.8
Gorai.007G164700 Gossypium raimondii HOM05D005155 ORTHO05D006266 5.9e-41 171.0 113 78.8
Oeu022053.1 Olea europaea HOM05D005155 ORTHO05D006266 5.9e-41 171.0 114 78.9
Actinidia20617 Actinidia chinensis HOM05D005155 ORTHO05D006266 1.0e-40 170.2 112 78.6
MD09G1131700 Malus domestica HOM05D005155 ORTHO05D006266 1.0e-40 170.2 113 77.9
ClCG02G003040 Citrullus lanatus HOM05D005155 ORTHO05D006266 1.7e-40 169.5 112 77.7
Haze_12586 Corylus avellana HOM05D005155 ORTHO05D006266 2.2e-40 169.1 116 75.9
Manes.13G059900 Manihot esculenta HOM05D005155 ORTHO05D006266 3.8e-40 168.3 112 77.7
Duzib138G0133 Durio zibethinus HOM05D005155 ORTHO05D006266 5.0e-40 167.9 113 76.1
Duzib211G0098 Durio zibethinus HOM05D005155 ORTHO05D006266 5.0e-40 167.9 113 76.1
Eucgr.K01388 Eucalyptus grandis HOM05D005155 ORTHO05D006266 5.0e-40 167.9 113 77.0
CsaV3_7G002370 Cucumis sativus L. HOM05D005155 ORTHO05D006266 6.5e-40 167.5 112 77.7
GSVIVG01030126001 Vitis vinifera HOM05D005155 ORTHO05D006266 6.5e-40 167.5 113 77.0
Gohir.D07G170200 Gossypium hirsutum HOM05D005155 ORTHO05D006266 8.5e-40 167.2 113 76.1
Gorai.001G190100 Gossypium raimondii HOM05D005155 ORTHO05D006266 8.5e-40 167.2 113 76.1
MELO3C024180.2 Cucumis melo HOM05D005155 ORTHO05D006266 1.1e-39 166.8 112 77.7
PGR044G0745 Punica granatum HOM05D005155 ORTHO05D006266 1.1e-39 166.8 112 75.9
MD17G1119200 Malus domestica HOM05D005155 ORTHO05D006266 1.4e-39 166.4 113 76.1
MBI04_g26115_MAGBIO Magnolia biondii HOM05D005155 ORTHO05D006266 3.2e-39 165.2 112 75.0
Atru.chr6.3431 Acer truncatum HOM05D005155 ORTHO05D006266 4.2e-39 164.9 112 76.8
THA.LOC104819027 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 4.2e-39 164.9 112 76.8
TWI75G0909 Tripterygium wilfordii HOM05D005155 ORTHO05D006266 4.2e-39 164.9 113 72.6
THA.LOC104802634 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 7.2e-39 164.1 112 76.8
Gohir.A07G163100 Gossypium hirsutum HOM05D005155 ORTHO05D006266 9.4e-39 163.7 113 74.3
Peaxi162Scf00359g00214 Petunia axillaris HOM05D005155 ORTHO05D006266 9.4e-39 163.7 114 77.2
Prupe.3G194600 Prunus persica HOM05D005155 ORTHO05D006266 9.4e-39 163.7 113 78.8
TPR.G35685 Trifolium pratense HOM05D005155 ORTHO05D006266 1.2e-38 163.3 112 75.9
TPR.G3861 Trifolium pratense HOM05D005155 ORTHO05D006266 1.2e-38 163.3 112 75.9
Cpa.g.sc136.55 Carica papaya HOM05D005155 ORTHO05D006266 1.6e-38 162.9 113 74.3
TAR629G2368 Trochodendron aralioides HOM05D005155 ORTHO05D006266 2.1e-38 162.5 125 68.0
Aqoxy3G04181 Aquilegia oxysepala HOM05D005155 ORTHO05D006266 4.6e-38 161.4 125 68.8
AL8G20970 Arabidopsis lyrata HOM05D005155 ORTHO05D006266 4.6e-38 161.4 109 74.3
CiPaw.04G197900 Carya illinoinensis HOM05D005155 ORTHO05D006266 4.6e-38 161.4 112 72.3
Sp2g18610 Schrenkiella parvula HOM05D005155 ORTHO05D006266 4.6e-38 161.4 109 76.1
Sed0007088 Sechium edule HOM05D005155 ORTHO05D006266 6.1e-38 161.0 112 74.1
Thhalv10004636m.g Eutrema salsugineum HOM05D005155 ORTHO05D006266 7.9e-38 160.6 109 76.1
Ah.08g219720 Amaranthus hybridus HOM05D005155 ORTHO05D006266 1.0e-37 160.2 125 68.0
AT5G48240 Arabidopsis thaliana HOM05D005155 ORTHO05D006266 1.0e-37 160.2 109 73.4
A06p39310 Brassica napus HOM05D005155 ORTHO05D006266 1.0e-37 160.2 109 74.3
BraA06t26845Z Brassica rapa HOM05D005155 ORTHO05D006266 1.0e-37 160.2 109 74.3
Carub.0008s0781 Capsella rubella HOM05D005155 ORTHO05D006266 1.0e-37 160.2 109 73.4
Psat5g216800 Pisum sativum HOM05D005155 ORTHO05D006266 1.8e-37 159.5 116 71.6
CANSAT64G2107 Cannabis sativa HOM05D005155 ORTHO05D006266 2.3e-37 159.1 112 71.4
CAN.G715.5 Capsicum annuum HOM05D005155 ORTHO05D006266 2.3e-37 159.1 113 74.3
Aa31LG4G7530 Aethionema arabicum HOM05D005155 ORTHO05D006266 3.0e-37 158.7 109 75.2
Ah.08g210400 Amaranthus hybridus HOM05D005155 ORTHO05D006266 6.7e-37 157.5 124 66.9
VMungo0540G1824 Vigna mungo HOM05D005155 ORTHO05D006266 6.7e-37 157.5 124 65.3
BolC7t44418H Brassica oleracea HOM05D005155 ORTHO05D006266 1.1e-36 156.8 110 74.5
Psat7g043480 Pisum sativum HOM05D005155 ORTHO05D006266 1.5e-36 156.4 112 73.2
C07p38970 Brassica napus HOM05D005155 ORTHO05D006266 2.0e-36 156.0 110 73.6
Glyma.03G238300 Glycine max HOM05D005155 ORTHO05D006266 2.0e-36 156.0 124 65.3
Phvul.006G092400 Phaseolus vulgaris HOM05D005155 ORTHO05D006266 3.3e-36 155.2 112 69.6
AUR62030994 Chenopodium quinoa HOM05D005155 ORTHO05D006266 4.3e-36 154.8 124 68.5
DCAR_021083 Daucus carota HOM05D005155 ORTHO05D006266 4.3e-36 154.8 113 71.7
Glyma.19G235800 Glycine max HOM05D005155 ORTHO05D006266 5.7e-36 154.5 124 65.3
QL04p067008 Quercus lobata HOM05D005155 ORTHO05D006266 1.3e-35 153.3 128 66.4
HPP92_009941 Vanilla planifolia HOM05D005155 ORTHO05D006266 1.7e-35 152.9 113 70.8
CSS0023894 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 8.2e-35 150.6 112 74.1
CARHR286520 Cardamine hirsuta HOM05D005155 ORTHO05D006266 8.2e-35 150.6 108 72.2
EL10Ac5g10791 Beta vulgaris HOM05D005155 ORTHO05D006266 1.1e-34 150.2 112 71.4
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 2.4e-34 149.1 114 70.2
Lalb_Chr21g0315451 Lupinus albus HOM05D005155 ORTHO05D006266 3.1e-34 148.7 112 67.9
CARHR218550 Cardamine hirsuta HOM05D005155 ORTHO05D006266 4.1e-34 148.3 108 70.4
Migut.M00065 Erythranthe guttata HOM05D005155 ORTHO05D006266 5.3e-34 147.9 116 70.7
SGA_v2.0_scaffold181G39700 Striga asiatica HOM05D005155 ORTHO05D006266 1.2e-33 146.7 138 63.0
A09p04360 Brassica napus HOM05D005155 ORTHO05D006266 1.5e-33 146.4 109 70.6
C09p04670 Brassica napus HOM05D005155 ORTHO05D006266 1.5e-33 146.4 109 70.6
BolC9t53395H Brassica oleracea HOM05D005155 ORTHO05D006266 1.5e-33 146.4 109 70.6
BraA09t36073Z Brassica rapa HOM05D005155 ORTHO05D006266 1.5e-33 146.4 109 70.6
Lsat_1_v5_gn_0_13881 Lactuca sativa HOM05D005155 ORTHO05D006266 3.4e-33 145.2 113 69.9
Lj4g0024217 Lotus japonicus HOM05D005155 ORTHO05D006266 3.4e-33 145.2 112 68.8
Sc20g0004590 Simmondsia chinensis HOM05D005155 ORTHO05D006266 3.4e-33 145.2 125 66.4
COL.COLO4_19654 Corchorus olitorius HOM05D005155 ORTHO05D006266 1.3e-32 143.3 87 83.9
HanXRQChr01g0006811 Helianthus annuus HOM05D005155 ORTHO05D006266 3.8e-32 141.7 113 67.3
BcaC06g30816 Brassica carinata HOM05D005155 ORTHO05D006266 1.1e-31 140.2 110 67.3
CDE09G0959 Ceratophyllum demersum HOM05D005155 ORTHO05D006266 3.2e-31 138.7 124 62.9
ECA248G0062 Erigeron canadensis HOM05D005155 ORTHO05D006266 3.2e-31 138.7 114 66.7
Os11g0266000 Oryza sativa ssp. japonica HOM05D005155 ORTHO05D006266 3.2e-31 138.7 124 58.9
SalBow7G0407 Salvia bowleyana HOM05D005155 ORTHO05D006266 5.5e-31 137.9 96 70.8
PSO210G0096 Papaver somniferum HOM05D005155 ORTHO05D006266 9.4e-31 137.1 123 60.2
RcHm_v2.0_Chr2g0155591 Rosa chinensis HOM05D005155 ORTHO05D006266 2.7e-30 135.6 113 69.0
PSO782G4695 Papaver somniferum HOM05D005155 ORTHO05D006266 4.7e-30 134.8 123 58.5
FvH4_6g40390 Fragaria vesca HOM05D005155 ORTHO05D006266 1.0e-29 133.7 114 66.7
FAN02G4414 Fragaria x ananassa HOM05D005155 ORTHO05D006266 1.0e-29 133.7 114 66.7
FAN09G4460 Fragaria x ananassa HOM05D005155 ORTHO05D006266 1.0e-29 133.7 114 66.7
BcaB04g19566 Brassica carinata HOM05D005155 ORTHO05D006266 1.8e-29 132.9 111 64.9
FAN05G3842 Fragaria x ananassa HOM05D005155 ORTHO05D006266 2.3e-29 132.5 114 65.8
Zm00001eb298370 Zea mays HOM05D005155 ORTHO05D006266 3.9e-29 131.7 112 63.4
BcaC04g23785 Brassica carinata HOM05D005155 ORTHO05D006266 3.3e-28 128.6 111 63.1
FAN14G3535 Fragaria x ananassa HOM05D005155 ORTHO05D006266 3.3e-28 128.6 110 66.4
SEGI_31719 Sequoiadendron giganteum HOM05D005155 ORTHO05D006266 2.8e-27 125.6 121 58.7
arahy.Tifrunner.gnm1.ann1.FV1RU3 Arachis hypogaea HOM05D005155 ORTHO05D006266 8.2e-27 124.0 113 58.4
arahy.Tifrunner.gnm1.ann1.ZBS9GV Arachis hypogaea HOM05D005155 ORTHO05D006266 8.2e-27 124.0 113 58.4
PSO782G5585 Papaver somniferum HOM05D005155 ORTHO05D006266 8.2e-27 124.0 111 57.7
Ca_02017_v3 Cicer arietinum L. HOM05D005155 ORTHO05D006266 1.4e-26 123.2 112 58.9
Nn3g19477 Nelumbo nucifera HOM05D005155 ORTHO05D006266 4.1e-26 121.7 123 55.3
ATR0225G032 Amborella trichopoda HOM05D005155 ORTHO05D006266 2.6e-25 119.0 129 55.0
AUR62008242 Chenopodium quinoa HOM05D005155 ORTHO05D006266 3.5e-25 118.6 89 71.9
Gohir.A11G147700 Gossypium hirsutum HOM05D005155 ORTHO05D006266 4.2e-23 111.7 113 60.2
Lj1A800T38 Lonicera japonica HOM05D005155 ORTHO05D006266 1.2e-22 110.2 167 46.1
PSO782G0752 Papaver somniferum HOM05D005155 ORTHO05D006266 7.4e-20 100.9 121 48.8
Hma1.2p1_1388F.1_g279940 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 5.3e-18 94.7 61 78.7
Nn1g02050 Nelumbo nucifera HOM05D005155 ORTHO05D006266 1.5e-15 86.7 112 50.9
Nn1g02049 Nelumbo nucifera HOM05D005155 ORTHO05D006266 4.7e-14 81.6 61 72.1
CiPaw.03G283900 Carya illinoinensis HOM05D005155 ORTHO05D006266 9.8e-12 73.9 119 40.3
AagrBONN_evm.TU.Sc2ySwM_368.2873 Anthoceros agrestis HOM05D005155 ORTHO05D006266 1.8e-10 69.7 102 45.1
Pp3c22_320 Physcomitrium patens HOM05D005155 ORTHO05D006266 5.4e-10 68.2 96 44.8
Pp3c22_322 Physcomitrium patens HOM05D005155 ORTHO05D006266 5.4e-10 68.2 96 44.8
CBR_g23113 Chara braunii HOM05D005155 ORTHO05D006266 1.2e-09 67.0 72 52.8
Mapoly0148s0006 Marchantia polymorpha HOM05D005155 ORTHO05D006266 2.0e-09 66.2 118 39.0
A02p30930 Brassica napus HOM05D005155 ORTHO05D006266 1.3e-08 63.5 66 56.1


User provided reference genes

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