Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g18480 Coffea canephora HOM05D005799 ORTHO05D007150 7.9e-77 290.4 153 100.0
Cc08_g16640 Coffea canephora HOM05D005799 ORTHO05D007150 3.0e-52 208.8 160 75.0
Sopen08g020700 Solanum pennellii HOM05D005799 ORTHO05D007150 8.3e-34 147.5 159 54.1
Solyc08g066730.3 Solanum lycopersicum HOM05D005799 ORTHO05D007150 1.4e-33 146.7 159 53.5
PGSC0003DMG400004314 Solanum tuberosum HOM05D005799 ORTHO05D007150 5.4e-33 144.8 159 54.1
Rhsim02G0251100 Rhododendron simsii HOM05D005799 ORTHO05D007150 4.6e-32 141.7 166 53.0
RhsimUnG0077100 Rhododendron simsii HOM05D005799 ORTHO05D007150 4.6e-32 141.7 166 53.0
Nitab4.5_0000151g0390 Nicotiana tabacum HOM05D005799 ORTHO05D007150 1.0e-31 140.6 165 53.9
Nitab4.5_0000837g0110 Nicotiana tabacum HOM05D005799 ORTHO05D007150 3.9e-31 138.7 166 51.8
Eucgr.D01689 Eucalyptus grandis HOM05D005799 ORTHO05D007150 6.6e-31 137.9 173 50.3
SGA_v2.0_scaffold104G30268 Striga asiatica HOM05D005799 ORTHO05D007150 5.6e-30 134.8 157 52.9
Dinv12007 Davidia involucrata HOM05D005799 ORTHO05D007150 3.6e-29 132.1 185 47.6
PGR031G2117 Punica granatum HOM05D005799 ORTHO05D007150 4.7e-29 131.7 173 48.0
CSS0005333 Camellia sinensis var. sinensis HOM05D005799 ORTHO05D007150 1.8e-28 129.8 182 45.6
CSS0012502 Camellia sinensis var. sinensis HOM05D005799 ORTHO05D007150 2.3e-28 129.4 182 45.6
MSTRG.12196 Avicennia marina HOM05D005799 ORTHO05D007150 4.0e-28 128.6 162 50.0
Sc07g0010180 Simmondsia chinensis HOM05D005799 ORTHO05D007150 6.8e-28 127.9 164 51.2
Nn3g18897 Nelumbo nucifera HOM05D005799 ORTHO05D007150 2.6e-27 125.9 178 47.2
Oeu010742.3 Olea europaea HOM05D005799 ORTHO05D007150 2.6e-27 125.9 152 49.3
ClCG10G000860 Citrullus lanatus HOM05D005799 ORTHO05D007150 3.4e-27 125.6 183 45.4
Peaxi162Scf00161g00018 Petunia axillaris HOM05D005799 ORTHO05D007150 9.8e-27 124.0 160 47.5
CAN.G335.7 Capsicum annuum HOM05D005799 ORTHO05D007150 1.3e-26 123.6 151 47.0
MELO3C013781.2 Cucumis melo HOM05D005799 ORTHO05D007150 1.7e-26 123.2 184 44.6
Migut.I01141 Erythranthe guttata HOM05D005799 ORTHO05D007150 1.1e-25 120.6 160 45.6
QL02p029127 Quercus lobata HOM05D005799 ORTHO05D007150 1.1e-25 120.6 159 49.1
SalBow6G6472 Salvia bowleyana HOM05D005799 ORTHO05D007150 1.1e-25 120.6 155 51.0
vmacro11512 Vaccinium macrocarpon HOM05D005799 ORTHO05D007150 1.4e-25 120.2 179 45.3
CsaV3_3G000940 Cucumis sativus L. HOM05D005799 ORTHO05D007150 1.9e-25 119.8 183 43.7
Haze_09149 Corylus avellana HOM05D005799 ORTHO05D007150 2.4e-25 119.4 154 48.1
Cfa011938 Carpinus fangiana HOM05D005799 ORTHO05D007150 3.2e-25 119.0 154 48.1
AUR62007039 Chenopodium quinoa HOM05D005799 ORTHO05D007150 4.1e-25 118.6 151 51.7
Manes.02G004000 Manihot esculenta HOM05D005799 ORTHO05D007150 4.1e-25 118.6 173 46.8
arahy.Tifrunner.gnm1.ann1.YTN4Z3 Arachis hypogaea HOM05D005799 ORTHO05D007150 1.6e-24 116.7 180 42.2
AUR62019903 Chenopodium quinoa HOM05D005799 ORTHO05D007150 1.6e-24 116.7 151 51.7
Lj8C201G21 Lonicera japonica HOM05D005799 ORTHO05D007150 2.7e-24 115.9 152 48.0
CiPaw.12G078600 Carya illinoinensis HOM05D005799 ORTHO05D007150 4.6e-24 115.2 162 44.4
arahy.Tifrunner.gnm1.ann1.3PG13R Arachis hypogaea HOM05D005799 ORTHO05D007150 6.0e-24 114.8 171 42.7
Actinidia22199 Actinidia chinensis HOM05D005799 ORTHO05D007150 7.8e-24 114.4 171 46.8
Sed0014517 Sechium edule HOM05D005799 ORTHO05D007150 1.0e-23 114.0 137 50.4
Glyma.07G067100 Glycine max HOM05D005799 ORTHO05D007150 1.3e-23 113.6 179 41.3
CARHR255850 Cardamine hirsuta HOM05D005799 ORTHO05D007150 1.7e-23 113.2 166 43.4
Lalb_Chr10g0096751 Lupinus albus HOM05D005799 ORTHO05D007150 1.7e-23 113.2 173 41.0
GSVIVG01019635001 Vitis vinifera HOM05D005799 ORTHO05D007150 1.7e-23 113.2 152 49.3
Ah.07g197850 Amaranthus hybridus HOM05D005799 ORTHO05D007150 3.0e-23 112.5 157 48.4
Glyma.16G033100 Glycine max HOM05D005799 ORTHO05D007150 3.9e-23 112.1 179 41.9
Psat7g010960 Pisum sativum HOM05D005799 ORTHO05D007150 3.9e-23 112.1 156 42.3
TAR375G0991 Trochodendron aralioides HOM05D005799 ORTHO05D007150 3.9e-23 112.1 180 43.9
CANSAT21G1656 Cannabis sativa HOM05D005799 ORTHO05D007150 5.0e-23 111.7 169 42.0
VMungo0331G1577 Vigna mungo HOM05D005799 ORTHO05D007150 5.0e-23 111.7 180 40.6
unitig_748.g7543 Utricularia gibba HOM05D005799 ORTHO05D007150 6.6e-23 111.3 150 47.3
Phvul.010G102500 Phaseolus vulgaris HOM05D005799 ORTHO05D007150 8.6e-23 110.9 173 41.0
TWI60G1445 Tripterygium wilfordii HOM05D005799 ORTHO05D007150 1.1e-22 110.5 170 41.8
HanXRQChr17g0534781 Helianthus annuus HOM05D005799 ORTHO05D007150 2.5e-22 109.4 151 41.7
COL.COLO4_10780 Corchorus olitorius HOM05D005799 ORTHO05D007150 3.3e-22 109.0 152 44.7
Lj3g0012917 Lotus japonicus HOM05D005799 ORTHO05D007150 5.6e-22 108.2 173 39.9
Medtr8g104280 Medicago truncatula HOM05D005799 ORTHO05D007150 9.5e-22 107.5 160 40.6
ECA246G3622 Erigeron canadensis HOM05D005799 ORTHO05D007150 1.6e-21 106.7 168 45.8
AT4G10760 Arabidopsis thaliana HOM05D005799 ORTHO05D007150 2.1e-21 106.3 165 44.2
THA.LOC104806452 Tarenaya hassleriana HOM05D005799 ORTHO05D007150 2.8e-21 105.9 167 43.7
Carub.0006s2954 Capsella rubella HOM05D005799 ORTHO05D007150 3.6e-21 105.5 167 42.5
Aa31LG9G11310 Aethionema arabicum HOM05D005799 ORTHO05D007150 4.7e-21 105.1 162 43.8
PSO063G0471 Papaver somniferum HOM05D005799 ORTHO05D007150 4.7e-21 105.1 172 40.1
PSO782G0762 Papaver somniferum HOM05D005799 ORTHO05D007150 4.7e-21 105.1 176 38.1
Sp6g06740 Schrenkiella parvula HOM05D005799 ORTHO05D007150 4.7e-21 105.1 170 44.1
A09p28470 Brassica napus HOM05D005799 ORTHO05D007150 6.2e-21 104.8 159 45.9
BraA09t38412Z Brassica rapa HOM05D005799 ORTHO05D007150 6.2e-21 104.8 159 45.9
Gorai.008G257500 Gossypium raimondii HOM05D005799 ORTHO05D007150 8.1e-21 104.4 152 42.8
Lalb_Chr04g0259181 Lupinus albus HOM05D005799 ORTHO05D007150 8.1e-21 104.4 174 37.4
BcaC04g21070 Brassica carinata HOM05D005799 ORTHO05D007150 1.1e-20 104.0 162 42.0
C09p36040 Brassica napus HOM05D005799 ORTHO05D007150 1.1e-20 104.0 162 42.0
BolC9t56443H Brassica oleracea HOM05D005799 ORTHO05D007150 1.1e-20 104.0 162 42.0
TPR.G32682 Trifolium pratense HOM05D005799 ORTHO05D007150 1.4e-20 103.6 161 38.5
BcaB01g01512 Brassica carinata HOM05D005799 ORTHO05D007150 1.8e-20 103.2 163 41.7
Gohir.D12G240500 Gossypium hirsutum HOM05D005799 ORTHO05D007150 2.3e-20 102.8 152 42.1
EL10Ac5g12455 Beta vulgaris HOM05D005799 ORTHO05D007150 5.2e-20 101.7 162 43.2
Ca_17312_v3 Cicer arietinum L. HOM05D005799 ORTHO05D007150 5.2e-20 101.7 155 40.6
Thecc.03G222800 Theobroma cacao HOM05D005799 ORTHO05D007150 5.2e-20 101.7 157 41.4
Lsat_1_v5_gn_3_13660 Lactuca sativa HOM05D005799 ORTHO05D007150 1.2e-19 100.5 154 41.6
AL6G44810 Arabidopsis lyrata HOM05D005799 ORTHO05D007150 2.6e-19 99.4 172 42.4
Gohir.A12G239300 Gossypium hirsutum HOM05D005799 ORTHO05D007150 2.6e-19 99.4 152 41.4
Atru.chr9.1907 Acer truncatum HOM05D005799 ORTHO05D007150 3.4e-19 99.0 160 41.2
Duzib205G1547 Durio zibethinus HOM05D005799 ORTHO05D007150 3.4e-19 99.0 150 42.7
MBI17_g40130_MAGBIO Magnolia biondii HOM05D005799 ORTHO05D007150 5.8e-19 98.2 177 39.0
Potri.001G085200 Populus trichocarpa HOM05D005799 ORTHO05D007150 5.8e-19 98.2 158 43.0
SHI06893 Sapria himalayana HOM05D005799 ORTHO05D007150 9.8e-19 97.4 162 45.1
Sabra01G0061800 Salix brachista HOM05D005799 ORTHO05D007150 2.2e-18 96.3 173 39.9
MD06G1116900 Malus domestica HOM05D005799 ORTHO05D007150 3.7e-18 95.5 189 36.5
MD14G1124400 Malus domestica HOM05D005799 ORTHO05D007150 3.7e-18 95.5 189 35.4
Thhalv10028481m.g Eutrema salsugineum HOM05D005799 ORTHO05D007150 6.4e-18 94.7 167 41.9
Medtr2g099870 Medicago truncatula HOM05D005799 ORTHO05D007150 2.4e-17 92.8 133 39.8
Ciclev10019070m.g Citrus clementina HOM05D005799 ORTHO05D007150 3.2e-17 92.4 157 38.9
MBI12_g03921_MAGBIO Magnolia biondii HOM05D005799 ORTHO05D007150 3.5e-16 89.0 129 44.2
Sed0010941 Sechium edule HOM05D005799 ORTHO05D007150 7.8e-16 87.8 177 39.5
FvH4_5g11050 Fragaria vesca HOM05D005799 ORTHO05D007150 1.7e-15 86.7 168 37.5
Prupe.5G128200 Prunus persica HOM05D005799 ORTHO05D007150 3.0e-15 85.9 190 34.2
FAN08G2876 Fragaria x ananassa HOM05D005799 ORTHO05D007150 6.6e-15 84.7 173 35.8
CDE04G1382 Ceratophyllum demersum HOM05D005799 ORTHO05D007150 8.6e-15 84.3 150 40.0
DCAR_006533 Daucus carota HOM05D005799 ORTHO05D007150 1.1e-14 84.0 157 40.1
FAN18G1901 Fragaria x ananassa HOM05D005799 ORTHO05D007150 1.1e-14 84.0 168 36.9
FAN04G0556 Fragaria x ananassa HOM05D005799 ORTHO05D007150 1.2e-13 80.5 170 35.9
HPP92_007392 Vanilla planifolia HOM05D005799 ORTHO05D007150 2.1e-13 79.7 159 40.3
RcHm_v2.0_Chr7g0186751 Rosa chinensis HOM05D005799 ORTHO05D007150 1.8e-12 76.6 167 34.7
FAN13G1348 Fragaria x ananassa HOM05D005799 ORTHO05D007150 4.0e-12 75.5 173 33.5
Hma1.2p1_0440F.1_g153730 Hydrangea macrophylla HOM05D005799 ORTHO05D007150 2.6e-11 72.8 51 70.6
Os02g0672600 Oryza sativa ssp. japonica HOM05D005799 ORTHO05D007150 7.6e-11 71.2 141 34.8
Zm00001eb250310 Zea mays HOM05D005799 ORTHO05D007150 4.9e-10 68.6 154 35.1
Cpa.g.sc1337.1 Carica papaya HOM05D005799 ORTHO05D007150 8.4e-10 67.8 53 62.3
TPR.G37954 Trifolium pratense HOM05D005799 ORTHO05D007150 3.2e-09 65.9 71 45.1
ATR0810G200 Amborella trichopoda HOM05D005799 ORTHO05D007150 1.2e-08 63.9 151 35.1
SGA_v2.0_scaffold36G14280 Striga asiatica HOM05D005799 ORTHO05D007150 1.6e-08 63.5 82 52.4
CDE07G1281 Ceratophyllum demersum HOM05D005799 ORTHO05D007150 1.5e-06 57.0 86 40.7


User provided reference genes

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